Bhi02G000471 (gene) Wax gourd (B227) v1

Overview


Name	Bhi02G000471
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	GTP-binding protein At3g49725, chloroplastic
Location	chr2: 12122225 .. 12122781 (+)
RNA-Seq Expression	Bhi02G000471
Synteny	Bhi02G000471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGTGGATACTGGTGAAAGGAGATCGTACGACTAATTCTTCCAAATGTTGAGAATCATCTCTGTATCGCAACCTCGCGTCAAGCCTCTCGCCCATTACGTATCCATTGTTTGTTCAGCCTCAACAAGCTATCTACTACCATCTAATTCTCTCATTCTAGGCTGTTGGCTCCTTGGATTTGAATTCTCTCTTCGCCATTCTCCCACTTATCCAAACAGAAGGAAGGTAGCTACGACGTTGTTTCCCTTTTCAATAGAGACCCAATAGCTCCGCCGAAACTCTTCGTGGTTCAACCTCGTCTTCGTCCTAATGCATTTCTGCAAGCAAAGTTAAATGAGGCTTTGTGTCTTGCAAATTCTCTAGAAGAACAACGAGATGGGTATTTTCATATTGATTTCTTCGACAAGGACATACCCTCTCACGTCGTAGTTCAAAATCCTTCTGCAAGAGTGGCCCACGCTGATACATATTTTGGACCAGGGACTGTGGATACCATCAAATGCCATTTGAATGCGGCAGAGTCGAAAGTGAAGTTGATGCTATTTTTGTGA

mRNA sequence

ATGGAGGATGTGGATACTGGTGAAAGGAGATCAGACCCAATAGCTCCGCCGAAACTCTTCGTGGTTCAACCTCGTCTTCGTCCTAATGCATTTCTGCAAGCAAAGTTAAATGAGGCTTTGTGTCTTGCAAATTCTCTAGAAGAACAACGAGATGGGTATTTTCATATTGATTTCTTCGACAAGGACATACCCTCTCACGTCGTAGTTCAAAATCCTTCTGCAAGAGTGGCCCACGCTGATACATATTTTGGACCAGGGACTGTGGATACCATCAAATGCCATTTGAATGCGGCAGAGTCGAAAGTGAAGTTGATGCTATTTTTGTGA

Coding sequence (CDS)

ATGGAGGATGTGGATACTGGTGAAAGGAGATCAGACCCAATAGCTCCGCCGAAACTCTTCGTGGTTCAACCTCGTCTTCGTCCTAATGCATTTCTGCAAGCAAAGTTAAATGAGGCTTTGTGTCTTGCAAATTCTCTAGAAGAACAACGAGATGGGTATTTTCATATTGATTTCTTCGACAAGGACATACCCTCTCACGTCGTAGTTCAAAATCCTTCTGCAAGAGTGGCCCACGCTGATACATATTTTGGACCAGGGACTGTGGATACCATCAAATGCCATTTGAATGCGGCAGAGTCGAAAGTGAAGTTGATGCTATTTTTGTGA

Protein sequence

MEDVDTGERRSDPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQNPSARVAHADTYFGPGTVDTIKCHLNAAESKVKLMLFL

Homology

[Close]

BLAST of Bhi02G000471 vs. TAIR 10
Match: AT3G49725.1 (GTP-binding protein, HflX )

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-33
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           DP + PKLF+VQPRL P  +LQAKLNEALCLANSLEEQR GYF  DFFDK++PSHVVVQN
Sbjct: 102 DPSSAPKLFLVQPRLAPPKYLQAKLNEALCLANSLEEQRYGYFESDFFDKELPSHVVVQN 161

Query: 72  PSARVA--HADTYFGPGTVDTIKCHLNAAESK 102
           P  R +    DTYFG GTVD IKCHLNA +SK
Sbjct: 162 PVRRSSKPRVDTYFGSGTVDNIKCHLNAEDSK 193

[Close]

BLAST of Bhi02G000471 vs. ExPASy Swiss-Prot
Match: Q0WTB4 (GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g49725 PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-32
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           DP + PKLF+VQPRL P  +LQAKLNEALCLANSLEEQR GYF  DFFDK++PSHVVVQN
Sbjct: 102 DPSSAPKLFLVQPRLAPPKYLQAKLNEALCLANSLEEQRYGYFESDFFDKELPSHVVVQN 161

Query: 72  PSARVA--HADTYFGPGTVDTIKCHLNAAESK 102
           P  R +    DTYFG GTVD IKCHLNA +SK
Sbjct: 162 PVRRSSKPRVDTYFGSGTVDNIKCHLNAEDSK 193

[Close]

BLAST of Bhi02G000471 vs. NCBI nr
Match: XP_038892861.1 (GTP-binding protein At3g49725, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           DP APPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIP HVVVQN
Sbjct: 65  DPTAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPPHVVVQN 124

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESKV 103
           PSAR A ADTYFGPGTVDTIKCHLNAAESKV
Sbjct: 125 PSARGARADTYFGPGTVDTIKCHLNAAESKV 155

[Close]

BLAST of Bhi02G000471 vs. NCBI nr
Match: XP_038892869.1 (GTP-binding protein At3g49725, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-42
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           DP APPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIP HVVVQN
Sbjct: 65  DPTAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPPHVVVQN 124

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PSAR A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 125 PSARGARADTYFGPGTVDTIKCHLNAAESK 154

[Close]

BLAST of Bhi02G000471 vs. NCBI nr
Match: XP_008462905.1 (PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X1 [Cucumis melo] >TYK04619.1 GTP-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 5.6e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           D  APPKLFVVQPRLRP  FLQAKLNEALCLANSLEEQRDGYFHIDFFDKD+P HV+VQN
Sbjct: 73  DLTAPPKLFVVQPRLRPYTFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDVPPHVIVQN 132

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PS R A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 133 PSVRGARADTYFGPGTVDTIKCHLNAAESK 162

[Close]

BLAST of Bhi02G000471 vs. NCBI nr
Match: KAA0056660.1 (GTP-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 5.6e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           D  APPKLFVVQPRLRP  FLQAKLNEALCLANSLEEQRDGYFHIDFFDKD+P HV+VQN
Sbjct: 73  DLTAPPKLFVVQPRLRPYTFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDVPPHVIVQN 132

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PS R A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 133 PSVRGARADTYFGPGTVDTIKCHLNAAESK 162

[Close]

BLAST of Bhi02G000471 vs. NCBI nr
Match: XP_008462906.1 (PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 5.6e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           D  APPKLFVVQPRLRP  FLQAKLNEALCLANSLEEQRDGYFHIDFFDKD+P HV+VQN
Sbjct: 73  DLTAPPKLFVVQPRLRPYTFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDVPPHVIVQN 132

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PS R A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 133 PSVRGARADTYFGPGTVDTIKCHLNAAESK 162

[Close]

BLAST of Bhi02G000471 vs. ExPASy TrEMBL
Match: A0A5D3C2J4 (GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00250 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           D  APPKLFVVQPRLRP  FLQAKLNEALCLANSLEEQRDGYFHIDFFDKD+P HV+VQN
Sbjct: 73  DLTAPPKLFVVQPRLRPYTFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDVPPHVIVQN 132

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PS R A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 133 PSVRGARADTYFGPGTVDTIKCHLNAAESK 162

[Close]

BLAST of Bhi02G000471 vs. ExPASy TrEMBL
Match: A0A5A7UNL3 (GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001920 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           D  APPKLFVVQPRLRP  FLQAKLNEALCLANSLEEQRDGYFHIDFFDKD+P HV+VQN
Sbjct: 73  DLTAPPKLFVVQPRLRPYTFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDVPPHVIVQN 132

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PS R A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 133 PSVRGARADTYFGPGTVDTIKCHLNAAESK 162

[Close]

BLAST of Bhi02G000471 vs. ExPASy TrEMBL
Match: A0A1S3CJK3 (GTP-binding protein At3g49725, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501174 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           D  APPKLFVVQPRLRP  FLQAKLNEALCLANSLEEQRDGYFHIDFFDKD+P HV+VQN
Sbjct: 73  DLTAPPKLFVVQPRLRPYTFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDVPPHVIVQN 132

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PS R A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 133 PSVRGARADTYFGPGTVDTIKCHLNAAESK 162

[Close]

BLAST of Bhi02G000471 vs. ExPASy TrEMBL
Match: A0A1S3CIG8 (GTP-binding protein At3g49725, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501174 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           D  APPKLFVVQPRLRP  FLQAKLNEALCLANSLEEQRDGYFHIDFFDKD+P HV+VQN
Sbjct: 73  DLTAPPKLFVVQPRLRPYTFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDVPPHVIVQN 132

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PS R A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 133 PSVRGARADTYFGPGTVDTIKCHLNAAESK 162

[Close]

BLAST of Bhi02G000471 vs. ExPASy TrEMBL
Match: A0A0A0L0G1 (GTP-binding protein hflx OS=Cucumis sativus OX=3659 GN=Csa_4G090350 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 12  DPIAPPKLFVVQPRLRPNAFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDIPSHVVVQN 71
           D  APPKLFVVQPRLRP  FLQAKLNEALCLANSLEEQRDGYFHIDFFDKD+P +VVVQN
Sbjct: 72  DLTAPPKLFVVQPRLRPYTFLQAKLNEALCLANSLEEQRDGYFHIDFFDKDVPPYVVVQN 131

Query: 72  PSARVAHADTYFGPGTVDTIKCHLNAAESK 102
           PS R A ADTYFGPGTVDTIKCHLNAAESK
Sbjct: 132 PSVRGARADTYFGPGTVDTIKCHLNAAESK 161

The following BLAST results are available for this feature:

BLAST of Bhi02G000471 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49725.1	2.8e-33	72.83	GTP-binding protein, HflX	[more]

BLAST of Bhi02G000471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WTB4	4.0e-32	72.83	GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Bhi02G000471 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892861.1	1.1e-42	95.60	GTP-binding protein At3g49725, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_038892869.1	3.1e-42	95.56	GTP-binding protein At3g49725, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_008462905.1	5.6e-39	88.89	PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X1 [Cucumis melo...	[more]
KAA0056660.1	5.6e-39	88.89	GTP-binding protein [Cucumis melo var. makuwa]	[more]
XP_008462906.1	5.6e-39	88.89	PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X2 [Cucumis melo...	[more]

BLAST of Bhi02G000471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2J4	2.7e-39	88.89	GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G...	[more]
A0A5A7UNL3	2.7e-39	88.89	GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G...	[more]
A0A1S3CJK3	2.7e-39	88.89	GTP-binding protein At3g49725, chloroplastic isoform X2 OS=Cucumis melo OX=3656 ...	[more]
A0A1S3CIG8	2.7e-39	88.89	GTP-binding protein At3g49725, chloroplastic isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A0A0L0G1	1.0e-38	88.89	GTP-binding protein hflx OS=Cucumis sativus OX=3659 GN=Csa_4G090350 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 29..49
None	No IPR available	PANTHER	PTHR10229:SF6	OS03G0727900 PROTEIN	coord: 11..101
IPR016496	GTPase HflX	PANTHER	PTHR10229	GTP-BINDING PROTEIN HFLX	coord: 11..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M000471	Bhi02M000471	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046872	metal ion binding