Bhi01G002826 (gene) Wax gourd (B227) v1

Overview
NameBhi01G002826
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRRM domain-containing protein
Locationchr1: 92205161 .. 92205349 (+)
RNA-Seq ExpressionBhi01G002826
SyntenyBhi01G002826
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAATCTTTTGATTCAGATCGTGGTTGGACGACTCCTCCCAAAGGTTTTGCGAAATTGAATGTCGATGCAACATGGAAGTCCTCTCCAGATTCTTATGGATTGAGCGCTATAATTAGAGATGAAGAAGGTTTATTGAAAGTTGTTGGTATATCTTCAGCAAATGTGATGTATCCTCCTCATTAG

mRNA sequence

ATGATGAAATCTTTTGATTCAGATCGTGGTTGGACGACTCCTCCCAAAGGTTTTGCGAAATTGAATGTCGATGCAACATGGAAGTCCTCTCCAGATTCTTATGGATTGAGCGCTATAATTAGAGATGAAGAAGGTTTATTGAAAGTTGTTGGTATATCTTCAGCAAATGTGATGTATCCTCCTCATTAG

Coding sequence (CDS)

ATGATGAAATCTTTTGATTCAGATCGTGGTTGGACGACTCCTCCCAAAGGTTTTGCGAAATTGAATGTCGATGCAACATGGAAGTCCTCTCCAGATTCTTATGGATTGAGCGCTATAATTAGAGATGAAGAAGGTTTATTGAAAGTTGTTGGTATATCTTCAGCAAATGTGATGTATCCTCCTCATTAG

Protein sequence

MMKSFDSDRGWTTPPKGFAKLNVDATWKSSPDSYGLSAIIRDEEGLLKVVGISSANVMYPPH
Homology
[Close]
BLAST of Bhi01G002826 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 5.7e-12
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 3   KSFDSDRGWTTPPKGFAKLNVDATWKSSPDSYGLSAIIRDEEGLLKVVGISSANVMYPP 62
           KS  SDR W+TPP  F KLNVDA WK SP S G SAIIRD +G LKVV ISS + +YPP
Sbjct: 48  KSGTSDRTWSTPPTSFIKLNVDAAWKFSPYSSGFSAIIRDNQGSLKVVQISSIDAVYPP 106

[Close]
BLAST of Bhi01G002826 vs. ExPASy TrEMBL
Match: A0A6A3BAW4 (RRM domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110198pilonHSYRG00004 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 3    KSFDSDRGWTTPPKGFAKLNVDATWKSSPDSYGLSAIIRDEEGLL 48
            KS  +   W+ PPKGF KLNVDAT  S  +S G++ I+RDEEG++
Sbjct: 1847 KSIVTTIPWSPPPKGFVKLNVDATTNSDWNSSGVAGILRDEEGII 1891

The following BLAST results are available for this feature:
BLAST of Bhi01G002826 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G002826 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G002826 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902513.15.7e-1266.10uncharacterized protein LOC120089172 [Benincasa hispida][more]
BLAST of Bhi01G002826 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A3BAW46.1e-0453.33RRM domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0011019... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M002826Bhi01M002826mRNA