Bhi01G002636 (gene) Wax gourd (B227) v1

Overview
NameBhi01G002636
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCytochrome b reductase 1
Locationchr1: 86157484 .. 86157836 (+)
RNA-Seq ExpressionBhi01G002636
SyntenyBhi01G002636
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGTGCTAAGCGATCTGCCGAAGCTGTGGGATAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGCGTGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCTGAAAACCTAAGGGTTCCTCTGCAAGGTTCGTCCATGGAGGGTGAGTCAGGGCCTAAGATTAAGCGAACAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCTCGAGGGACGGAGGAAGCTAGGTACCCGAAAAGATGTTATCGGTTTAGAGGCGCGAGGTGCCCCTGTTTTTTAG

mRNA sequence

AATGGTGCTAAGCGATCTGCCGAAGCTGTGGGATAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGCGTGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCTGAAAACCTAAGGGTTCCTCTGCAAGGTTCGTCCATGGAGGGTGAGTCAGGGCCTAAGATTAAGCGAACAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCTCGAGGGACGGAGGAAGCTAGGTACCCGAAAAGATGTTATCGGTTTAGAGGCGCGAGGTGCCCCTGTTTTTTAG

Coding sequence (CDS)

ATGGAGGGTGAGTCAGGGCCTAAGATTAAGCGAACAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCTCGAGGGACGGAGGAAGCTAGGTACCCGAAAAGATGTTATCGGTTTAGAGGCGCGAGGTGCCCCTGTTTTTTAG

Protein sequence

MEGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRKDVIGLEARGAPVF
Homology
[Close]
BLAST of Bhi01G002636 vs. NCBI nr
Match: KAG9438445.1 (hypothetical protein H6P81_021615 [Aristolochia fimbriata])

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 2   EGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRK 41
           EGESGPKI+  GVVDGQQVNIPVLPLVG EGRR+LG R+
Sbjct: 85  EGESGPKIRPKGVVDGQQVNIPVLPLVGPEGRRRLGVRR 123

[Close]
BLAST of Bhi01G002636 vs. NCBI nr
Match: KAF3663431.1 (ORF82c [Capsicum annuum])

HSP 1 Score: 67.0 bits (162), Expect = 5.5e-08
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MEGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRKD 42
          M+GESGPKI   GVV+GQQVNIP+LPLVGLEGRR+L   KD
Sbjct: 1  MKGESGPKISPKGVVNGQQVNIPILPLVGLEGRRRLSKLKD 41

[Close]
BLAST of Bhi01G002636 vs. NCBI nr
Match: PHT76205.1 (30S ribosomal protein S11, chloroplastic [Capsicum annuum])

HSP 1 Score: 67.0 bits (162), Expect = 5.5e-08
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MEGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRKD 42
          M+GESGPKI   GVV+GQQVNIP+LPLVGLEGRR+L   KD
Sbjct: 1  MKGESGPKISPKGVVNGQQVNIPILPLVGLEGRRRLSKLKD 41

[Close]
BLAST of Bhi01G002636 vs. NCBI nr
Match: KAF3685134.1 (ORF82c [Capsicum annuum])

HSP 1 Score: 67.0 bits (162), Expect = 5.5e-08
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MEGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRKD 42
          M+GESGPKI   GVV+GQQVNIP+LPLVGLEGRR+L   KD
Sbjct: 1  MKGESGPKISPKGVVNGQQVNIPILPLVGLEGRRRLSKLKD 41

[Close]
BLAST of Bhi01G002636 vs. NCBI nr
Match: PHU28461.1 (hypothetical protein BC332_00554 [Capsicum chinense])

HSP 1 Score: 66.2 bits (160), Expect = 9.5e-08
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 2  EGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRKDVI 44
          EGESGPKI+  GVVDGQQVNIPVLPLVG EGRR+LG  +  +
Sbjct: 35 EGESGPKIRPKGVVDGQQVNIPVLPLVGPEGRRRLGKARTTL 76

[Close]
BLAST of Bhi01G002636 vs. ExPASy TrEMBL
Match: A0A2G2Z2W4 (30S ribosomal protein S11, chloroplastic OS=Capsicum annuum OX=4072 GN=T459_19727 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MEGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRKD 42
          M+GESGPKI   GVV+GQQVNIP+LPLVGLEGRR+L   KD
Sbjct: 1  MKGESGPKISPKGVVNGQQVNIPILPLVGLEGRRRLSKLKD 41

[Close]
BLAST of Bhi01G002636 vs. ExPASy TrEMBL
Match: A0A6L2N1W9 (Putative RNA-directed DNA polymerase OS=Tanacetum cinerariifolium OX=118510 GN=Tci_050512 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 2   EGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLG 38
           EGESGPKI+  GVVDGQQVNIPVLPLVG EGRR+LG
Sbjct: 779 EGESGPKIRSKGVVDGQQVNIPVLPLVGSEGRRRLG 814

[Close]
BLAST of Bhi01G002636 vs. ExPASy TrEMBL
Match: A0A2G3DBY4 (Protein TIC 214 OS=Capsicum chinense OX=80379 GN=BC332_00554 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 2  EGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRKDVI 44
          EGESGPKI+  GVVDGQQVNIPVLPLVG EGRR+LG  +  +
Sbjct: 35 EGESGPKIRPKGVVDGQQVNIPVLPLVGPEGRRRLGKARTTL 76

[Close]
BLAST of Bhi01G002636 vs. ExPASy TrEMBL
Match: A0A2J6M3Z9 (PMR5N domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_8X139821 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 2  EGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGT 39
          EGESGPKI+  GVVDGQQVNIPVLPLVG EGRR+L T
Sbjct: 23 EGESGPKIRPKGVVDGQQVNIPVLPLVGPEGRRRLAT 59

[Close]
BLAST of Bhi01G002636 vs. ExPASy TrEMBL
Match: A0A4D8Y7T3 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_050852 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 2  EGESGPKIKRTGVVDGQQVNIPVLPLVGLEGRRKLGTRK 41
          EGESGPKI+  GVVDGQQVNIPVLPLVG EGR +LG  K
Sbjct: 41 EGESGPKIRPKGVVDGQQVNIPVLPLVGPEGRSRLGVEK 79

The following BLAST results are available for this feature:
BLAST of Bhi01G002636 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G002636 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G002636 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG9438445.12.5e-0882.05hypothetical protein H6P81_021615 [Aristolochia fimbriata][more]
KAF3663431.15.5e-0875.61ORF82c [Capsicum annuum][more]
PHT76205.15.5e-0875.6130S ribosomal protein S11, chloroplastic [Capsicum annuum][more]
KAF3685134.15.5e-0875.61ORF82c [Capsicum annuum][more]
PHU28461.19.5e-0873.81hypothetical protein BC332_00554 [Capsicum chinense][more]
BLAST of Bhi01G002636 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2G2Z2W42.7e-0875.6130S ribosomal protein S11, chloroplastic OS=Capsicum annuum OX=4072 GN=T459_1972... [more]
A0A6L2N1W94.6e-0886.11Putative RNA-directed DNA polymerase OS=Tanacetum cinerariifolium OX=118510 GN=T... [more]
A0A2G3DBY44.6e-0873.81Protein TIC 214 OS=Capsicum chinense OX=80379 GN=BC332_00554 PE=3 SV=1[more]
A0A2J6M3Z91.0e-0783.78PMR5N domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_8X139821 PE=3 ... [more]
A0A4D8Y7T31.0e-0779.49Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_050852 PE=4 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M002636Bhi01M002636mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0015979 photosynthesis
biological_process GO:0015031 protein transport
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0006412 translation
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0009579 thylakoid
molecular_function GO:0048027 mRNA 5'-UTR binding
molecular_function GO:0016413 O-acetyltransferase activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome