Bhi01G002476 (gene) Wax gourd (B227) v1

Overview
NameBhi01G002476
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionpathogen-related protein-like
Locationchr1: 79542634 .. 79542876 (+)
RNA-Seq ExpressionBhi01G002476
SyntenyBhi01G002476
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCTATTAAGATGAGCCCTGAGGAAACCAGTATTGTTGCTGATAAGTATAGAGTTTTCTTGAATTTGGAGGATCCTACCATTCAATGGAGGCATGGACAGCCCCCAACTTATGAAACTGTTAACCAGCTCTTTGAAGATGGCAGAACCAAGGTTTTTCTTTCTTTCTCTTTTTCTTTCTCTAAAATTATCTTTTTTCCTATTTCTTTCTCTGTCTCATATCATTCTGTAATTACTTAA

mRNA sequence

ATGCAATCTATTAAGATGAGCCCTGAGGAAACCAGTATTGTTGCTGATAAGTATAGAGTTTTCTTGAATTTGGAGGATCCTACCATTCAATGGAGGCATGGACAGCCCCCAACTTATGAAACTGTTAACCAGCTCTTTGAAGATGGCAGAACCAAGGTTTTTCTTTCTTTCTCTTTTTCTTTCTCTAAAATTATCTTTTTTCCTATTTCTTTCTCTGTCTCATATCATTCTGTAATTACTTAA

Coding sequence (CDS)

ATGCAATCTATTAAGATGAGCCCTGAGGAAACCAGTATTGTTGCTGATAAGTATAGAGTTTTCTTGAATTTGGAGGATCCTACCATTCAATGGAGGCATGGACAGCCCCCAACTTATGAAACTGTTAACCAGCTCTTTGAAGATGGCAGAACCAAGGTTTTTCTTTCTTTCTCTTTTTCTTTCTCTAAAATTATCTTTTTTCCTATTTCTTTCTCTGTCTCATATCATTCTGTAATTACTTAA

Protein sequence

MQSIKMSPEETSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTKVFLSFSFSFSKIIFFPISFSVSYHSVIT
Homology
BLAST of Bhi01G002476 vs. TAIR 10
Match: AT1G78780.2 (pathogenesis-related family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 0

Query: 16 DKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTKVF 55
          DKYR  L  +   +QWR+  PP + +VNQLFE+G+TKV+
Sbjct: 8  DKYRSVLE-DAGQVQWRYDNPPDFNSVNQLFEEGQTKVW 45

BLAST of Bhi01G002476 vs. TAIR 10
Match: AT1G78780.4 (pathogenesis-related family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 0

Query: 16 DKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTKVF 55
          DKYR  L  +   +QWR+  PP + +VNQLFE+G+TKV+
Sbjct: 8  DKYRSVLE-DAGQVQWRYDNPPDFNSVNQLFEEGQTKVW 45

BLAST of Bhi01G002476 vs. ExPASy Swiss-Prot
Match: P16273 (Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 9.0e-05
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0

Query: 16 DKYRVFLNLE-DPTIQWRHGQPPTYETVNQLFEDGRTK 53
          DKYR FL+ + +    WRHG PP Y+ VN+LFE+ RTK
Sbjct: 9  DKYRSFLHGDGEKKTVWRHGAPPNYDLVNKLFEEERTK 46

BLAST of Bhi01G002476 vs. NCBI nr
Match: XP_038907202.1 (pathogen-related protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MQSIKMSPEETSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTK 53
          M+SIKMS EETSIVADKYRVFLNLEDPTIQWRHG+PPTYETVNQLFEDGRTK
Sbjct: 1  MESIKMSLEETSIVADKYRVFLNLEDPTIQWRHGKPPTYETVNQLFEDGRTK 52

BLAST of Bhi01G002476 vs. NCBI nr
Match: XP_038907210.1 (pathogen-related protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MQSIKMSPEETSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTK 53
          M+SIKMS EETSIVADKYRVFLNLEDPTIQWRHG+PPTYETVNQLFEDGRTK
Sbjct: 1  MESIKMSLEETSIVADKYRVFLNLEDPTIQWRHGKPPTYETVNQLFEDGRTK 52

BLAST of Bhi01G002476 vs. NCBI nr
Match: XP_038904395.1 (pathogen-related protein-like [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MQSIKMSPEETSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTKVF 55
          M+S KMSPEET IVADKYRVFLNLEDPTIQWRHG+PPTYET+N  FEDGRTKV+
Sbjct: 1  MESNKMSPEETIIVADKYRVFLNLEDPTIQWRHGKPPTYETLNMFFEDGRTKVW 54

BLAST of Bhi01G002476 vs. NCBI nr
Match: XP_038904524.1 (pathogen-related protein-like [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 4.9e-16
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 0

Query: 1  MQSIKMSPEETSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTK 53
          M+SIKMSPEET  V DKYRVFLNL+DPTIQWR+G+PPTYE++N+ FEDGRTK
Sbjct: 1  MESIKMSPEETITVVDKYRVFLNLKDPTIQWRNGKPPTYESLNKFFEDGRTK 52

BLAST of Bhi01G002476 vs. NCBI nr
Match: XP_022142928.1 (pathogen-related protein-like [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 11 TSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTK 53
          + ++ DKYRVFL+LE PT+ WRHG+PPTYE+VNQLFEDGRTK
Sbjct: 2  SGVLPDKYRVFLHLESPTVHWRHGKPPTYESVNQLFEDGRTK 43

BLAST of Bhi01G002476 vs. ExPASy TrEMBL
Match: A0A6J1CPH1 (pathogen-related protein-like OS=Momordica charantia OX=3673 GN=LOC111012921 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 11 TSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTK 53
          + ++ DKYRVFL+LE PT+ WRHG+PPTYE+VNQLFEDGRTK
Sbjct: 2  SGVLPDKYRVFLHLESPTVHWRHGKPPTYESVNQLFEDGRTK 43

BLAST of Bhi01G002476 vs. ExPASy TrEMBL
Match: A0A6J1J4T6 (pathogen-related protein-like OS=Cucurbita maxima OX=3661 GN=LOC111481259 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 12 SIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTK 53
          S+V DKYRVFL+LE PT+ WRHG+PPT+E VNQLFEDGRTK
Sbjct: 10 SVVPDKYRVFLHLEPPTVHWRHGKPPTFEIVNQLFEDGRTK 50

BLAST of Bhi01G002476 vs. ExPASy TrEMBL
Match: A0A6J1EYN7 (pathogen-related protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437625 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MQSIKMSPEETSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTKVF 55
          M+SIK S +E  +  DKYRV+L+LE PT++WR G+PP YE VN+LFEDGRTKV+
Sbjct: 1  MESIKKSTDEAIMGPDKYRVWLHLEGPTVEWRMGKPPNYEAVNKLFEDGRTKVW 54

BLAST of Bhi01G002476 vs. ExPASy TrEMBL
Match: A0A6J1FUM9 (pathogen-related protein OS=Cucurbita moschata OX=3662 GN=LOC111447433 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 12 SIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTK 53
          S+V DKYRVFL+LE PT+ WRHG+PPT+E VNQLFEDGRTK
Sbjct: 10 SVVPDKYRVFLHLEPPTVHWRHGKPPTFEIVNQLFEDGRTK 50

BLAST of Bhi01G002476 vs. ExPASy TrEMBL
Match: A0A6J1JAH5 (pathogen-related protein-like OS=Cucurbita maxima OX=3661 GN=LOC111483209 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MQSIKMSPEETSIVADKYRVFLNLEDPTIQWRHGQPPTYETVNQLFEDGRTKVF 55
          M+SIKMS +E  + ADKYRVFL+LE PT+QW+ G+ P+YE VN+LFEDGRTKV+
Sbjct: 40 MESIKMSTDEAIMGADKYRVFLHLEAPTVQWKRGR-PSYEAVNKLFEDGRTKVW 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G78780.21.4e-0551.28pathogenesis-related family protein [more]
AT1G78780.41.4e-0551.28pathogenesis-related family protein [more]
Match NameE-valueIdentityDescription
P162739.0e-0555.26Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
XP_038907202.11.2e-1994.23pathogen-related protein-like isoform X1 [Benincasa hispida][more]
XP_038907210.11.2e-1994.23pathogen-related protein-like isoform X2 [Benincasa hispida][more]
XP_038904395.12.3e-1885.19pathogen-related protein-like [Benincasa hispida][more]
XP_038904524.14.9e-1678.85pathogen-related protein-like [Benincasa hispida][more]
XP_022142928.13.6e-1173.81pathogen-related protein-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1CPH11.8e-1173.81pathogen-related protein-like OS=Momordica charantia OX=3673 GN=LOC111012921 PE=... [more]
A0A6J1J4T62.3e-1178.05pathogen-related protein-like OS=Cucurbita maxima OX=3661 GN=LOC111481259 PE=4 S... [more]
A0A6J1EYN72.3e-1162.96pathogen-related protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1FUM92.3e-1178.05pathogen-related protein OS=Cucurbita moschata OX=3662 GN=LOC111447433 PE=4 SV=1[more]
A0A6J1JAH53.0e-1166.67pathogen-related protein-like OS=Cucurbita maxima OX=3661 GN=LOC111483209 PE=4 S... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M002476Bhi01M002476mRNA