Bhi01G001893 (gene) Wax gourd (B227) v1

Overview
NameBhi01G001893
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnknown protein
Locationchr1: 59628124 .. 59628330 (+)
RNA-Seq ExpressionBhi01G001893
SyntenyBhi01G001893
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTCTAGCTGGAGCAGGATCACTTGATTTTACTTCAGTCCTCAATATAGTCGTCAGGAAATTATCAGACCATGACGAAACTCAAGAAGATGCAAACTCTTCTGCATCTGTGAATACTGAAGTCAAAAACGACGAAGATGACTACGACCCCTTCGCCGATTACGACATCAATGACCCATTTTTAGACCCACAACCAAATTAG

mRNA sequence

ATGAGTTCTCTAGCTGGAGCAGGATCACTTGATTTTACTTCAGTCCTCAATATAGTCGTCAGGAAATTATCAGACCATGACGAAACTCAAGAAGATGCAAACTCTTCTGCATCTGTGAATACTGAAGTCAAAAACGACGAAGATGACTACGACCCCTTCGCCGATTACGACATCAATGACCCATTTTTAGACCCACAACCAAATTAG

Coding sequence (CDS)

ATGAGTTCTCTAGCTGGAGCAGGATCACTTGATTTTACTTCAGTCCTCAATATAGTCGTCAGGAAATTATCAGACCATGACGAAACTCAAGAAGATGCAAACTCTTCTGCATCTGTGAATACTGAAGTCAAAAACGACGAAGATGACTACGACCCCTTCGCCGATTACGACATCAATGACCCATTTTTAGACCCACAACCAAATTAG

Protein sequence

MSSLAGAGSLDFTSVLNIVVRKLSDHDETQEDANSSASVNTEVKNDEDDYDPFADYDINDPFLDPQPN
Homology
[Close]
BLAST of Bhi01G001893 vs. NCBI nr
Match: KAA0060292.1 (hypothetical protein E6C27_scaffold22G00670 [Cucumis melo var. makuwa] >TYK22042.1 hypothetical protein E5676_scaffold318G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 1  MSSLAGAGSL-DFTSVLNIVVRKLSDHDETQEDANSSASVNTEV-KNDEDDYDPFADYDI 60
          MSSLAG GS  +F  V+N V  ++SD D+ Q +ANS  S+N  + ++DEDD++ + DYDI
Sbjct: 17 MSSLAGVGSQEEFNFVVNTVAVQISDPDDLQAEANSPISINNVIEEDDEDDFNSYVDYDI 76

Query: 61 NDPFLDPQP 68
          NDPFLD QP
Sbjct: 77 NDPFLDSQP 85

[Close]
BLAST of Bhi01G001893 vs. ExPASy TrEMBL
Match: A0A5A7UWR6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00160 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 1  MSSLAGAGSL-DFTSVLNIVVRKLSDHDETQEDANSSASVNTEV-KNDEDDYDPFADYDI 60
          MSSLAG GS  +F  V+N V  ++SD D+ Q +ANS  S+N  + ++DEDD++ + DYDI
Sbjct: 17 MSSLAGVGSQEEFNFVVNTVAVQISDPDDLQAEANSPISINNVIEEDDEDDFNSYVDYDI 76

Query: 61 NDPFLDPQP 68
          NDPFLD QP
Sbjct: 77 NDPFLDSQP 85

The following BLAST results are available for this feature:
BLAST of Bhi01G001893 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G001893 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G001893 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060292.12.7e-0753.62hypothetical protein E6C27_scaffold22G00670 [Cucumis melo var. makuwa] >TYK22042... [more]
BLAST of Bhi01G001893 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UWR61.3e-0753.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M001893Bhi01M001893mRNA