Bhi01G001686 (gene) Wax gourd (B227) v1

Overview
NameBhi01G001686
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionGypsy/ty3 element polyprotein
Locationchr1: 52042395 .. 52043008 (+)
RNA-Seq ExpressionBhi01G001686
SyntenyBhi01G001686
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTGAAGTATTTCAACATTTCTAATATATTGTTAGGCCTCTTATCAAGCATTTGTACAAGAGAAGGGGTAAGGGGTAAGGGGCAAAAGAGGAATACCACAGACATAGCTTAGGCTGATAGTTAGGTTGTGGGATCTTGGGCTATACGTTTTGTATGGGATTTTGGGGATTGGAAGATATTTAAACGTTTTGTTGCTTAGGGTTAGTTGTCTTGTCTTTTCAATTTGTGAACATTGAGTTTTAGAAGAGGGGAGTCCTTTTTTGGCTGGGAGAAGGTTGTTGGAGAACTGGTATTTGTCTGTGTTTAATATTTGCAGGGCTTAGACTCGTTTTGAATATTATTATAGTAAGGCAAGGAACCTTACAAGTGGTATCAAAGCCACGAAAATCTTTGTGGAAGGAAAAGAAAATAATGCAGAAACATATGGAAGAGCGTTTGAGCACAATGGAGAGTGACATTGGACTCATCAAGCAGGAGCTGAAAAGGCTTCTGGTGTTGGAAAAGTCGATGGATAAGAACCAGATCATGATGGTAGAGATGTACGGGGATCGCAATAACTCTCAAGGAACCGCCATAGGAAAAATAAATGTGAAATCAGATATGGACTAG

mRNA sequence

ATGCATTTGAAGTATTTCAACATTTCTAATATATTGTTAGGCCTCTTATCAAGCATTTGTACAAGAGAAGGGGTAAGGGGGCTTAGACTCGTTTTGAATATTATTATAGTAAGGCAAGGAACCTTACAAGTGGTATCAAAGCCACGAAAATCTTTGTGGAAGGAAAAGAAAATAATGCAGAAACATATGGAAGAGCGTTTGAGCACAATGGAGAGTGACATTGGACTCATCAAGCAGGAGCTGAAAAGGCTTCTGGTGTTGGAAAAGTCGATGGATAAGAACCAGATCATGATGGTAGAGATGTACGGGGATCGCAATAACTCTCAAGGAACCGCCATAGGAAAAATAAATGTGAAATCAGATATGGACTAG

Coding sequence (CDS)

ATGCATTTGAAGTATTTCAACATTTCTAATATATTGTTAGGCCTCTTATCAAGCATTTGTACAAGAGAAGGGGTAAGGGGGCTTAGACTCGTTTTGAATATTATTATAGTAAGGCAAGGAACCTTACAAGTGGTATCAAAGCCACGAAAATCTTTGTGGAAGGAAAAGAAAATAATGCAGAAACATATGGAAGAGCGTTTGAGCACAATGGAGAGTGACATTGGACTCATCAAGCAGGAGCTGAAAAGGCTTCTGGTGTTGGAAAAGTCGATGGATAAGAACCAGATCATGATGGTAGAGATGTACGGGGATCGCAATAACTCTCAAGGAACCGCCATAGGAAAAATAAATGTGAAATCAGATATGGACTAG

Protein sequence

MHLKYFNISNILLGLLSSICTREGVRGLRLVLNIIIVRQGTLQVVSKPRKSLWKEKKIMQKHMEERLSTMESDIGLIKQELKRLLVLEKSMDKNQIMMVEMYGDRNNSQGTAIGKINVKSDMD
Homology
[Close]
BLAST of Bhi01G001686 vs. NCBI nr
Match: KAA0054710.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-04
Identity = 25/51 (49.02%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 60  QKHMEERLSTMESDIGLIKQELKRLLVLEKSMDKNQIMMVEMYGDRNNSQG 111
           QK + +RL+T E DIG IKQE++R+ +LEK+++K  +++V+MY DR + QG
Sbjct: 3   QKQLGDRLTTTEGDIGAIKQEMQRIPILEKTVEKIHVILVKMYDDRQSQQG 53

[Close]
BLAST of Bhi01G001686 vs. ExPASy TrEMBL
Match: A0A5A7UHF6 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005370 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 25/51 (49.02%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 60  QKHMEERLSTMESDIGLIKQELKRLLVLEKSMDKNQIMMVEMYGDRNNSQG 111
           QK + +RL+T E DIG IKQE++R+ +LEK+++K  +++V+MY DR + QG
Sbjct: 3   QKQLGDRLTTTEGDIGAIKQEMQRIPILEKTVEKIHVILVKMYDDRQSQQG 53

[Close]
BLAST of Bhi01G001686 vs. ExPASy TrEMBL
Match: A0A5A7TXG3 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00670 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.3e-04
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 36  IVRQGTLQVVSKPRKSLWKEKKIMQKHMEERLSTMESDIGLIKQELKRLLVLEKSMDKNQ 95
           I+  GTL +VSK   +L + KK+ QK +E+ L+T E++I  IKQE++RL +LEK++ K  
Sbjct: 130 IIGPGTLNIVSKLVATLGRWKKMTQKLIEDCLTTSEAEIEAIKQEVQRLPLLEKNVKKMH 189

Query: 96  IMMVEMYGDRNNSQG 111
            M+  MY D     G
Sbjct: 190 AMLTAMYQDHQRQLG 204

The following BLAST results are available for this feature:
BLAST of Bhi01G001686 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G001686 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G001686 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054710.18.6e-0449.02gypsy/ty3 element polyprotein [Cucumis melo var. makuwa][more]
BLAST of Bhi01G001686 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UHF64.2e-0449.02Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7TXG39.3e-0442.67Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M001686Bhi01M001686mRNA