Bhi01G001644 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G001644
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	protein PRD1 isoform X1
Location	chr1: 49579460 .. 49579870 (-)
RNA-Seq Expression	Bhi01G001644
Synteny	Bhi01G001644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTGCACATTGCTGAAGGTAAGGATCCCTTAGCAAGGGCTTGTCTTCAGGCCCTTAATCTTCTTTCAAGTGCTAAATTTCCCTTCAATCAAAGGCTTGTAATCCGATTTGCAACACTAATTCTAGTGTTGGGTCATGTTGCTGAAGTTCCTTTCCATCCAATTCACAGCCAAACACTTGGTCTCATTTTAAAATGCATTTCTCAGTGTTCTGGACTAGTGGTTGTATCTCACATTGAAGAACTACTTCTTATTTTGACGAGTATGCTCCGTAAGAATGTGACTGGGGAGATGGACATACATCCAGACATATTTGCAACAACCTGTGCAATCTTGGTCACGAATATGAAGTCTCTATCTCATAGGGTGCCACATCTAGCAACATCAATTCAAGAAGTATTAGAACAT

mRNA sequence

ATGCCTTTGCACATTGCTGAAGGTAAGGATCCCTTAGCAAGGGCTTGTCTTCAGGCCCTTAATCTTCTTTCAAGTGCTAAATTTCCCTTCAATCAAAGGCTTGTAATCCGATTTGCAACACTAATTCTAGTGTTGGGTCATGTTGCTGAAGTTCCTTTCCATCCAATTCACAGCCAAACACTTGGTCTCATTTTAAAATGCATTTCTCAGTGTTCTGGACTAGTGGTTGTATCTCACATTGAAGAACTACTTCTTATTTTGACGAGTATGCTCCGTAAGAATGTGACTGGGGAGATGGACATACATCCAGACATATTTGCAACAACCTGTGCAATCTTGGTCACGAATATGAAGTCTCTATCTCATAGGGTGCCACATCTAGCAACATCAATTCAAGAAGTATTAGAACAT

Coding sequence (CDS)

ATGCCTTTGCACATTGCTGAAGGTAAGGATCCCTTAGCAAGGGCTTGTCTTCAGGCCCTTAATCTTCTTTCAAGTGCTAAATTTCCCTTCAATCAAAGGCTTGTAATCCGATTTGCAACACTAATTCTAGTGTTGGGTCATGTTGCTGAAGTTCCTTTCCATCCAATTCACAGCCAAACACTTGGTCTCATTTTAAAATGCATTTCTCAGTGTTCTGGACTAGTGGTTGTATCTCACATTGAAGAACTACTTCTTATTTTGACGAGTATGCTCCGTAAGAATGTGACTGGGGAGATGGACATACATCCAGACATATTTGCAACAACCTGTGCAATCTTGGTCACGAATATGAAGTCTCTATCTCATAGGGTGCCACATCTAGCAACATCAATTCAAGAAGTATTAGAACAT

Protein sequence

MPLHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLGLILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSHRVPHLATSIQEVLEH

Homology

[Close]

BLAST of Bhi01G001644 vs. TAIR 10
Match: AT4G14180.1 (putative recombination initiation defect 1 )

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-17
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 25  SAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLGLILKCISQCSGLVVVSHIEELL 84
           SA+  F +RLVI F ++I VL +V EVP HP   QTL LI  CIS   G+   S ++E+ 
Sbjct: 357 SAEHSFRKRLVIGFPSVIRVLHYVGEVPCHPFQIQTLKLISSCISDFPGIASSSQVQEIA 416

Query: 85  LILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH-RVPHLATSIQEVLEH 138
           L+L  ML +  + EM + PD FA  C++ V+ MK+ S      + TS+QE L H
Sbjct: 417 LVLKKMLERYYSQEMGLFPDAFAIICSVFVSLMKTPSFGETADVLTSLQESLRH 470

[Close]

BLAST of Bhi01G001644 vs. ExPASy Swiss-Prot
Match: O23277 (Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=PRD1 PE=1 SV=3)

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-21
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L ++E KD +  +CL+ L+L S A+  F +RLVI F ++I VL +V EVP HP   QTL 
Sbjct: 354 LRLSECKDQVVNSCLRVLDLFSLAEHSFRKRLVIGFPSVIRVLHYVGEVPCHPFQIQTLK 413

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LI  CIS   G+   S ++E+ L+L  ML +  + EM + PD FA  C++ V+ MK+ S 
Sbjct: 414 LISSCISDFPGIASSSQVQEIALVLKKMLERYYSQEMGLFPDAFAIICSVFVSLMKTPSF 473

Query: 123 -RVPHLATSIQEVLEH 138
                + TS+QE L H
Sbjct: 474 GETADVLTSLQESLRH 489

[Close]

BLAST of Bhi01G001644 vs. NCBI nr
Match: XP_038884337.1 (LOW QUALITY PROTEIN: protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like [Benincasa hispida])

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52
Identity = 110/130 (84.62%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 8   GKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLGLILKC 67
           GKDPL RACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLGLILKC
Sbjct: 338 GKDPLTRACLQALDLLSRAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLGLILKC 397

Query: 68  ISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSHRVPHL 127
           ISQC G+V VSHIEEL+LILTSMLRKNVT EM IHPD FATTCAILVT MKS SHRVPHL
Sbjct: 398 ISQCPGVVTVSHIEELVLILTSMLRKNVTWEMSIHPDTFATTCAILVTIMKSPSHRVPHL 457

Query: 128 ATSIQEVLEH 138
           ATSIQEVLEH
Sbjct: 458 ATSIQEVLEH 467

[Close]

BLAST of Bhi01G001644 vs. NCBI nr
Match: XP_011656476.1 (protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 3.3e-52
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L  +EGKDPLARACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLG
Sbjct: 328 LRFSEGKDPLARACLQALDLLSKAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLG 387

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LIL+CISQC G+V  SHIEEL+L LT MLRKNVTGEM IHPD FATTC ILVT MKS SH
Sbjct: 388 LILRCISQCPGVVAASHIEELVLTLTRMLRKNVTGEMGIHPDTFATTCEILVTIMKSPSH 447

Query: 123 RVPHLATSIQEVLEH 138
           RVPHLATS+QEVLEH
Sbjct: 448 RVPHLATSVQEVLEH 462

[Close]

BLAST of Bhi01G001644 vs. NCBI nr
Match: XP_011656475.1 (protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 3.3e-52
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L  +EGKDPLARACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLG
Sbjct: 331 LRFSEGKDPLARACLQALDLLSKAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLG 390

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LIL+CISQC G+V  SHIEEL+L LT MLRKNVTGEM IHPD FATTC ILVT MKS SH
Sbjct: 391 LILRCISQCPGVVAASHIEELVLTLTRMLRKNVTGEMGIHPDTFATTCEILVTIMKSPSH 450

Query: 123 RVPHLATSIQEVLEH 138
           RVPHLATS+QEVLEH
Sbjct: 451 RVPHLATSVQEVLEH 465

[Close]

BLAST of Bhi01G001644 vs. NCBI nr
Match: XP_031743763.1 (protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X4 [Cucumis sativus] >KGN45917.2 hypothetical protein Csa_005132 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 3.3e-52
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L  +EGKDPLARACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLG
Sbjct: 331 LRFSEGKDPLARACLQALDLLSKAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLG 390

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LIL+CISQC G+V  SHIEEL+L LT MLRKNVTGEM IHPD FATTC ILVT MKS SH
Sbjct: 391 LILRCISQCPGVVAASHIEELVLTLTRMLRKNVTGEMGIHPDTFATTCEILVTIMKSPSH 450

Query: 123 RVPHLATSIQEVLEH 138
           RVPHLATS+QEVLEH
Sbjct: 451 RVPHLATSVQEVLEH 465

[Close]

BLAST of Bhi01G001644 vs. NCBI nr
Match: XP_031743762.1 (protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 3.3e-52
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L  +EGKDPLARACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLG
Sbjct: 276 LRFSEGKDPLARACLQALDLLSKAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLG 335

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LIL+CISQC G+V  SHIEEL+L LT MLRKNVTGEM IHPD FATTC ILVT MKS SH
Sbjct: 336 LILRCISQCPGVVAASHIEELVLTLTRMLRKNVTGEMGIHPDTFATTCEILVTIMKSPSH 395

Query: 123 RVPHLATSIQEVLEH 138
           RVPHLATS+QEVLEH
Sbjct: 396 RVPHLATSVQEVLEH 410

[Close]

BLAST of Bhi01G001644 vs. ExPASy TrEMBL
Match: A0A0A0KDQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022280 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L  +EGKDPLARACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLG
Sbjct: 331 LRFSEGKDPLARACLQALDLLSKAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLG 390

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LIL+CISQC G+V  SHIEEL+L LT MLRKNVTGEM IHPD FATTC ILVT MKS SH
Sbjct: 391 LILRCISQCPGVVAASHIEELVLTLTRMLRKNVTGEMGIHPDTFATTCEILVTIMKSPSH 450

Query: 123 RVPHLATSIQEVLEH 138
           RVPHLATS+QEVLEH
Sbjct: 451 RVPHLATSVQEVLEH 465

[Close]

BLAST of Bhi01G001644 vs. ExPASy TrEMBL
Match: A0A1S4E4N2 (protein PRD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.5e-52
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L  +EGKDPLARACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLG
Sbjct: 331 LRFSEGKDPLARACLQALDLLSKAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLG 390

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LILKCISQC G+V  SHIEEL+L LT MLR+NVTG+M IHPD FATTC ILVT MKS SH
Sbjct: 391 LILKCISQCPGVVAASHIEELVLTLTRMLRQNVTGKMGIHPDTFATTCGILVTIMKSPSH 450

Query: 123 RVPHLATSIQEVLEH 138
           RVPHLATSIQEVLEH
Sbjct: 451 RVPHLATSIQEVLEH 465

[Close]

BLAST of Bhi01G001644 vs. ExPASy TrEMBL
Match: A0A5D3BTV9 (Protein PRD1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00200 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.5e-52
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L  +EGKDPLARACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLG
Sbjct: 328 LRFSEGKDPLARACLQALDLLSKAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLG 387

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LILKCISQC G+V  SHIEEL+L LT MLR+NVTG+M IHPD FATTC ILVT MKS SH
Sbjct: 388 LILKCISQCPGVVAASHIEELVLTLTRMLRQNVTGKMGIHPDTFATTCGILVTIMKSPSH 447

Query: 123 RVPHLATSIQEVLEH 138
           RVPHLATSIQEVLEH
Sbjct: 448 RVPHLATSIQEVLEH 462

[Close]

BLAST of Bhi01G001644 vs. ExPASy TrEMBL
Match: A0A1S3CLC8 (protein PRD1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.5e-52
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           L  +EGKDPLARACLQAL+LLS A+ PFNQRL + FATLI VL HVAEVPFHP+HSQTLG
Sbjct: 331 LRFSEGKDPLARACLQALDLLSKAELPFNQRLAVGFATLIPVLRHVAEVPFHPVHSQTLG 390

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LILKCISQC G+V  SHIEEL+L LT MLR+NVTG+M IHPD FATTC ILVT MKS SH
Sbjct: 391 LILKCISQCPGVVAASHIEELVLTLTRMLRQNVTGKMGIHPDTFATTCGILVTIMKSPSH 450

Query: 123 RVPHLATSIQEVLEH 138
           RVPHLATSIQEVLEH
Sbjct: 451 RVPHLATSIQEVLEH 465

[Close]

BLAST of Bhi01G001644 vs. ExPASy TrEMBL
Match: A0A6J1ET85 (protein PRD1 OS=Cucurbita moschata OX=3662 GN=LOC111436301 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 104/134 (77.61%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 3   LHIAEGKDPLARACLQALNLLSSAKFPFNQRLVIRFATLILVLGHVAEVPFHPIHSQTLG 62
           +  +EGKDPLARACLQAL+LLS A+ PF++RLV+ FATLI VL HVAEVPFHP+H+QTLG
Sbjct: 334 VRFSEGKDPLARACLQALDLLSRAEQPFSRRLVVGFATLIPVLRHVAEVPFHPVHTQTLG 393

Query: 63  LILKCISQCSGLVVVSHIEELLLILTSMLRKNVTGEMDIHPDIFATTCAILVTNMKSLSH 122
           LILKCISQC G+V  SHIEEL+  LTSMLRKNVTGEM IHPD FATTCAILVT MKS SH
Sbjct: 394 LILKCISQCPGVVSASHIEELVHTLTSMLRKNVTGEMGIHPDTFATTCAILVTIMKSPSH 453

Query: 123 RVPHLATSIQEVLE 137
           RVP LA S+QEVLE
Sbjct: 454 RVPCLAASVQEVLE 467

The following BLAST results are available for this feature:

BLAST of Bhi01G001644 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14180.1	2.1e-17	42.98	putative recombination initiation defect 1	[more]

BLAST of Bhi01G001644 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23277	4.0e-21	41.91	Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Bhi01G001644 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884337.1	2.5e-52	84.62	LOW QUALITY PROTEIN: protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like [Be...	[more]
XP_011656476.1	3.3e-52	80.00	protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X2 [Cucumis sativus]	[more]
XP_011656475.1	3.3e-52	80.00	protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X1 [Cucumis sativus]	[more]
XP_031743763.1	3.3e-52	80.00	protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X4 [Cucumis sativus] ...	[more]
XP_031743762.1	3.3e-52	80.00	protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X3 [Cucumis sativus]	[more]

BLAST of Bhi01G001644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDQ9	1.6e-52	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022280 PE=4 SV=1	[more]
A0A1S4E4N2	3.5e-52	80.00	protein PRD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1	[more]
A0A5D3BTV9	3.5e-52	80.00	Protein PRD1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CLC8	3.5e-52	80.00	protein PRD1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1	[more]
A0A6J1ET85	1.4e-48	77.61	protein PRD1 OS=Cucurbita moschata OX=3662 GN=LOC111436301 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 135..137
IPR044968	Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1	PANTHER	PTHR36379	PROTEIN PRD1	coord: 3..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001644	Bhi01M001644	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042138	meiotic DNA double-strand break formation