Bhi01G001479 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G001479
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr1: 42881539 .. 42881799 (-)
RNA-Seq Expression	Bhi01G001479
Synteny	Bhi01G001479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGGAGCTTGGAATTTGCAATAAGAGCCTTCAAGAAAATTAAGAAAAAGAATGTGATTTCATGGACTTCAGTTGTATCTTCCTATTGTGATAATGGTCAAGCAGCTCGGAGTTTAAGTTTCTTCGCCGAAATGCTCTCGGATGGTGTGGAACCAAACGAGTACACTTTAACAAGTGTCTTGATCGCTTGTTGTGTAATGTTGACATTGGGTTTAGGAGCACAGATTCATTCACTAAGCGTGGAACCTTCATCGAAG

mRNA sequence

ATGTCTGGGAGCTTGGAATTTGCAATAAGAGCCTTCAAGAAAATTAAGAAAAAGAATGTGATTTCATGGACTTCAGTTGTATCTTCCTATTGTGATAATGGTCAAGCAGCTCGGAGTTTAAGTTTCTTCGCCGAAATGCTCTCGGATGGTGTGGAACCAAACGAGTACACTTTAACAAGTGTCTTGATCGCTTGTTGTGTAATGTTGACATTGGGTTTAGGAGCACAGATTCATTCACTAAGCGTGGAACCTTCATCGAAG

Coding sequence (CDS)

ATGTCTGGGAGCTTGGAATTTGCAATAAGAGCCTTCAAGAAAATTAAGAAAAAGAATGTGATTTCATGGACTTCAGTTGTATCTTCCTATTGTGATAATGGTCAAGCAGCTCGGAGTTTAAGTTTCTTCGCCGAAATGCTCTCGGATGGTGTGGAACCAAACGAGTACACTTTAACAAGTGTCTTGATCGCTTGTTGTGTAATGTTGACATTGGGTTTAGGAGCACAGATTCATTCACTAAGCGTGGAACCTTCATCGAAG

Protein sequence

MSGSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLIACCVMLTLGLGAQIHSLSVEPSSK

Homology

[Close]

BLAST of Bhi01G001479 vs. TAIR 10
Match: AT3G13770.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-12
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 5   LEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLIA 64
           LE A +   ++ +KNV+SWT+++S Y   G ++ +L+ FAEM+    +PNE+T  +VL +
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 65  CCVMLTLGLGAQIHSLSVE 84
           C     LGLG QIH L V+
Sbjct: 163 CIRASGLGLGKQIHGLIVK 181

[Close]

BLAST of Bhi01G001479 vs. TAIR 10
Match: AT3G61170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-12
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 2   SGSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSV 61
           S  L  A + F+    KN ISW +++S YC +G    + + F EM SDG++PNEYTL SV
Sbjct: 72  SRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSV 131

Query: 62  LIACCVMLTLGLGAQIHSLSVE 84
           L  C  ++ L  G QIH  +++
Sbjct: 132 LRMCTSLVLLLRGEQIHGHTIK 153

[Close]

BLAST of Bhi01G001479 vs. TAIR 10
Match: AT1G04840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-12
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 2   SGSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSV 61
           SG L  A + F+ + +KNV+SWT++++ +   G    ++S + EML  G++PNEYT+ +V
Sbjct: 240 SGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAV 299

Query: 62  LIACCVMLTLGLGAQIHSLSVEPSSK 88
           L AC     LG G +IH   ++   K
Sbjct: 300 LSACSKSGALGSGIRIHGYILDNGIK 325

[Close]

BLAST of Bhi01G001479 vs. TAIR 10
Match: AT3G01580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 2   SGSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSV 61
           S + + A+  FK I +K+VISW++V++ Y  NG AA +L  F +M+ DG EPN  T+  V
Sbjct: 211 SRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCV 270

Query: 62  LIACCVMLTLGLGAQIHSLSV 83
           L AC     L  G + H L++
Sbjct: 271 LQACAAAHDLEQGRKTHELAI 291

[Close]

BLAST of Bhi01G001479 vs. TAIR 10
Match: AT4G18520.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 3   GSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVL 62
           G L  A+RAF  +++K+VISWT+V+S+    G   +++  F  ML+    PNE+T+ S+L
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSIL 291

Query: 63  IACCVMLTLGLGAQIHSLSVE 84
            AC     L  G Q+HSL V+
Sbjct: 292 KACSEEKALRFGRQVHSLVVK 312

[Close]

BLAST of Bhi01G001479 vs. ExPASy Swiss-Prot
Match: Q9LIC3 (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 5   LEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLIA 64
           LE A +   ++ +KNV+SWT+++S Y   G ++ +L+ FAEM+    +PNE+T  +VL +
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 65  CCVMLTLGLGAQIHSLSVE 84
           C     LGLG QIH L V+
Sbjct: 163 CIRASGLGLGKQIHGLIVK 181

[Close]

BLAST of Bhi01G001479 vs. ExPASy Swiss-Prot
Match: Q9MAT2 (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.1e-11
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 2   SGSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSV 61
           SG L  A + F+ + +KNV+SWT++++ +   G    ++S + EML  G++PNEYT+ +V
Sbjct: 240 SGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAV 299

Query: 62  LIACCVMLTLGLGAQIHSLSVEPSSK 88
           L AC     LG G +IH   ++   K
Sbjct: 300 LSACSKSGALGSGIRIHGYILDNGIK 325

[Close]

BLAST of Bhi01G001479 vs. ExPASy Swiss-Prot
Match: Q9SS97 (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E87 PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-10
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 2   SGSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSV 61
           S + + A+  FK I +K+VISW++V++ Y  NG AA +L  F +M+ DG EPN  T+  V
Sbjct: 211 SRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCV 270

Query: 62  LIACCVMLTLGLGAQIHSLSV 83
           L AC     L  G + H L++
Sbjct: 271 LQACAAAHDLEQGRKTHELAI 291

[Close]

BLAST of Bhi01G001479 vs. ExPASy Swiss-Prot
Match: Q0WNP3 (Pentatricopeptide repeat-containing protein At4g18520, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A2 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-10
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 3   GSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVL 62
           G L  A+RAF  +++K+VISWT+V+S+    G   +++  F  ML+    PNE+T+ S+L
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSIL 291

Query: 63  IACCVMLTLGLGAQIHSLSVE 84
            AC     L  G Q+HSL V+
Sbjct: 292 KACSEEKALRFGRQVHSLVVK 312

[Close]

BLAST of Bhi01G001479 vs. ExPASy Swiss-Prot
Match: Q9C507 (Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E66 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 3   GSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVL 62
           G L  + R F+KI KKN +SWT+++SSY     + ++L  F+EM+  G+EPN  TL SVL
Sbjct: 251 GDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVL 310

Query: 63  IACCVMLTLGLGAQIHSLSV 83
            +C ++  +  G  +H  +V
Sbjct: 311 SSCGLIGLIREGKSVHGFAV 330

[Close]

BLAST of Bhi01G001479 vs. NCBI nr
Match: XP_038885496.1 (putative pentatricopeptide repeat-containing protein At5g52630 [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 2   SGSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSV 61
           SGSLEFAIRAFKKIKKKNVISWTSVVSS CDNGQAARSLSFF EMLSD VEPNEYTLTSV
Sbjct: 220 SGSLEFAIRAFKKIKKKNVISWTSVVSSCCDNGQAARSLSFFFEMLSDDVEPNEYTLTSV 279

Query: 62  LIACCVMLTLGLGAQIHSLSVE 84
           L ACCVMLTLGLGAQIHSLS++
Sbjct: 280 LSACCVMLTLGLGAQIHSLSIK 301

[Close]

BLAST of Bhi01G001479 vs. NCBI nr
Match: KGN63014.2 (hypothetical protein Csa_022504 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 5   LEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLIA 64
           LEFAI+AFK IK+K+VISWTSV+SS CDNGQAARSLSFF +MLSDG++PNEYTLTSVL A
Sbjct: 61  LEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSA 120

Query: 65  CCVMLTLGLGAQIHSLSVE 84
           CCVMLTL LGAQIHSLS++
Sbjct: 121 CCVMLTLDLGAQIHSLSIK 139

[Close]

BLAST of Bhi01G001479 vs. NCBI nr
Match: XP_011649704.1 (putative pentatricopeptide repeat-containing protein At5g52630 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 5   LEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLIA 64
           LEFAI+AFK IK+K+VISWTSV+SS CDNGQAARSLSFF +MLSDG++PNEYTLTSVL A
Sbjct: 244 LEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSA 303

Query: 65  CCVMLTLGLGAQIHSLSVE 84
           CCVMLTL LGAQIHSLS++
Sbjct: 304 CCVMLTLDLGAQIHSLSIK 322

[Close]

BLAST of Bhi01G001479 vs. NCBI nr
Match: XP_008444960.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-27
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 4   SLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLI 63
           SLEFAIRAF+KIK+K+VISWTS +SS CDNGQAARSLSFF +ML DGVEPNEYTL SVL 
Sbjct: 214 SLEFAIRAFQKIKEKDVISWTSAISSCCDNGQAARSLSFFIDMLLDGVEPNEYTLASVLS 273

Query: 64  ACCVMLTLGLGAQIHSLSVE 84
           ACCV LTL LGAQIHSLS++
Sbjct: 274 ACCVKLTLDLGAQIHSLSIK 293

[Close]

BLAST of Bhi01G001479 vs. NCBI nr
Match: XP_023538358.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo] >XP_023538359.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-27
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 3   GSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVL 62
           G LE AIRAF+KIK+KNVISWTSVVS+  DNGQAARSLSFF +MLS+GVEPNEYTLTS+L
Sbjct: 223 GCLELAIRAFQKIKEKNVISWTSVVSACGDNGQAARSLSFFTKMLSEGVEPNEYTLTSIL 282

Query: 63  IACCVMLTLGLGAQIHSLSVE 84
             CCVMLTL LGAQIHSLS++
Sbjct: 283 STCCVMLTLSLGAQIHSLSIK 303

[Close]

BLAST of Bhi01G001479 vs. ExPASy TrEMBL
Match: A0A0A0LRW6 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G372180 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.5e-28
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 5   LEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLIA 64
           LEFAI+AFK IK+K+VISWTSV+SS CDNGQAARSLSFF +MLSDG++PNEYTLTSVL A
Sbjct: 216 LEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSA 275

Query: 65  CCVMLTLGLGAQIHSLSVE 84
           CCVMLTL LGAQIHSLS++
Sbjct: 276 CCVMLTLDLGAQIHSLSIK 294

[Close]

BLAST of Bhi01G001479 vs. ExPASy TrEMBL
Match: A0A5A7VCR9 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004040 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 4   SLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLI 63
           SLEFAIRAF+KIK+K+VISWTS +SS CDNGQAARSLSFF +ML DGVEPNEYTL SVL 
Sbjct: 186 SLEFAIRAFQKIKEKDVISWTSAISSCCDNGQAARSLSFFIDMLLDGVEPNEYTLASVLS 245

Query: 64  ACCVMLTLGLGAQIHSLSVE 84
           ACCV LTL LGAQIHSLS++
Sbjct: 246 ACCVKLTLDLGAQIHSLSIK 265

[Close]

BLAST of Bhi01G001479 vs. ExPASy TrEMBL
Match: A0A1S3BBK8 (putative pentatricopeptide repeat-containing protein At5g52630 OS=Cucumis melo OX=3656 GN=LOC103488145 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 4   SLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVLI 63
           SLEFAIRAF+KIK+K+VISWTS +SS CDNGQAARSLSFF +ML DGVEPNEYTL SVL 
Sbjct: 214 SLEFAIRAFQKIKEKDVISWTSAISSCCDNGQAARSLSFFIDMLLDGVEPNEYTLASVLS 273

Query: 64  ACCVMLTLGLGAQIHSLSVE 84
           ACCV LTL LGAQIHSLS++
Sbjct: 274 ACCVKLTLDLGAQIHSLSIK 293

[Close]

BLAST of Bhi01G001479 vs. ExPASy TrEMBL
Match: A0A6J1KJZ5 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima OX=3661 GN=LOC111495952 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.5e-27
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 3   GSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVL 62
           G LE AIRAF+KIK+KNVISWTSVVS+  DNGQAARSL FF +MLS+GVEPNEYTLTSVL
Sbjct: 223 GCLELAIRAFQKIKEKNVISWTSVVSACGDNGQAARSLCFFTKMLSEGVEPNEYTLTSVL 282

Query: 63  IACCVMLTLGLGAQIHSLSVE 84
             CCVMLTL LGAQIHSLS++
Sbjct: 283 STCCVMLTLSLGAQIHSLSIK 303

[Close]

BLAST of Bhi01G001479 vs. ExPASy TrEMBL
Match: A0A6J1BQL4 (putative pentatricopeptide repeat-containing protein At5g52630 OS=Momordica charantia OX=3673 GN=LOC111004719 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.5e-27
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 3   GSLEFAIRAFKKIKKKNVISWTSVVSSYCDNGQAARSLSFFAEMLSDGVEPNEYTLTSVL 62
           GSL+FAIRAF+KI++KNVISWTSVVS+  DNGQAA+SLSFF EML +GVEPNEYTLTS L
Sbjct: 224 GSLDFAIRAFQKIEEKNVISWTSVVSACGDNGQAAQSLSFFTEMLEEGVEPNEYTLTSAL 283

Query: 63  IACCVMLTLGLGAQIHSLSVE 84
            ACCVML L LGAQIHSLS++
Sbjct: 284 SACCVMLALALGAQIHSLSIK 304

The following BLAST results are available for this feature:

BLAST of Bhi01G001479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13770.1	1.3e-12	41.77	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G61170.1	1.7e-12	41.46	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04840.1	6.5e-12	37.21	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G01580.1	1.1e-11	40.74	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18520.1	1.4e-11	40.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Bhi01G001479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIC3	1.8e-11	41.77	Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS...	[more]
Q9MAT2	9.1e-11	37.21	Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana OX...	[more]
Q9SS97	1.6e-10	40.74	Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis th...	[more]
Q0WNP3	2.0e-10	40.74	Pentatricopeptide repeat-containing protein At4g18520, chloroplastic OS=Arabidop...	[more]
Q9C507	1.0e-09	40.00	Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS...	[more]

BLAST of Bhi01G001479 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885496.1	1.1e-32	92.68	putative pentatricopeptide repeat-containing protein At5g52630 [Benincasa hispid...	[more]
KGN63014.2	1.8e-27	82.28	hypothetical protein Csa_022504 [Cucumis sativus]	[more]
XP_011649704.1	1.8e-27	82.28	putative pentatricopeptide repeat-containing protein At5g52630 [Cucumis sativus]	[more]
XP_008444960.1	3.9e-27	81.25	PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Cucum...	[more]
XP_023538358.1	3.9e-27	80.25	pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp...	[more]

BLAST of Bhi01G001479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRW6	8.5e-28	82.28	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G3721...	[more]
A0A5A7VCR9	1.9e-27	81.25	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3BBK8	1.9e-27	81.25	putative pentatricopeptide repeat-containing protein At5g52630 OS=Cucumis melo O...	[more]
A0A6J1KJZ5	5.5e-27	80.25	pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima O...	[more]
A0A6J1BQL4	5.5e-27	79.01	putative pentatricopeptide repeat-containing protein At5g52630 OS=Momordica char...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 18..66 e-value: 1.1E-11 score: 44.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 21..55 e-value: 1.2E-7 score: 29.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 19..53 score: 11.8273
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..71 e-value: 1.4E-15 score: 59.0
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 4..83
None	No IPR available	PANTHER	PTHR47925:SF26	PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED	coord: 4..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001479	Bhi01M001479	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:1990841	promoter-specific chromatin binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0008270	zinc ion binding