Bhi01G001457 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G001457
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	chr1: 41758926 .. 41761628 (+)
RNA-Seq Expression	Bhi01G001457
Synteny	Bhi01G001457

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAATGCAAATTGCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTGAATTTTCTCTCTATCTCTAAAGCACAGTCACTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTTTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTACTTCAAAACCATTCCAAGTTCCTTTTGCTGTGAAGCAAAGATCCACCTCTTCTTCCTGCATTACCAACTTGCATTCTGTTTCTGCGTCGAAATTGAGGCACCAGAACTTCAGAACTCTCGATATCTCTGCTTCTGCTACGGCCGCTGAAGCTGCTGAAGCTGCTCCAGAATCGCTTGTTGCTGATGATTCCGACTCCGAGTCCTCTCCTGTTAAGGAGGTCTCTCTCTCTCCCCCTCCCTTTCTTTCTCATGTGATTGCCCGTTTATTTTGGTTGGTTCTTAGCAAGTTTAAATGAATGTTTGTTTTTTCGTCTCAAATTTGGGGAGAGAAATGGAAAATTTGGTAAACAAACGGTATTGCTGTTGATTAGTGAATTGAGAGGGGCGGATTAATTGGTGAATTTGGATACTTGAAAGTTCGTCATATTTGTAGAAACTGTTAAAAAAAAATTCTTGATTCTTCTTTTTTGTTCTTTATTAAGGAAGTACTTGAATTCTTCGTAATCCAATTGCTTACTGTGGCTATGTATTATTCATTATTTGTTTGATCGAGTAGTGTTATTTTCTCTATAAACAATGATAGAAATTCTGGTATAAACGAATTACTAATATTTTGCGACTAACTTGGAAGATATGTTCTAATAAGAATGTTGATGTTGATTTTCATGAATCCCTGAAAGATTATGAATTTTGAAATGAAGGTATTGAAGAATATCAATTCTCAATCAGTAGTTAGATGATTGAGGCAACTTTAACCTTAAAATGTTAATTTCATTAAATTCAAATTGAAATTTGAATAAATAATGAGAATTAATACCCCTTGTTGGCCGAGTTGCTATTTCCTCTAGGTTTCTGGTTATATCTGTGTTCTTGTGATGCGAATTGGGATGTGGTTAGTTTTTTGAATGCTCATTTTATTGTTGCCTTGCCTTGCCTTGCCTTGCCTTGAGCATTTGTTTTGGTTGGGTTTTGATGTTTTATTGTTGGATTTATGTATTCCATTGGTTGTTAGACTTTGTGGCTTGATTTGGATGTCTCTTCACTGAGTTTTTATTATAGTAGTTGGAATTTGATTTTGTTTTCTGAATTTTAGGTGATACTTTGCTGCTTTTTGAACACGTTTCTAGATTTATTTTGTGAGATTTTACTTTCATCAATTATTTAAGTTTAGAATTCAGTTCGATAAAATTATAACCTTAAGGCTAATGCATGTGTGTGGTTTTCTTTTCTTTTCTTTTTCTTTTCCCCTTCCTTTATCCATTCCTTAAGGAGAGGCTTTTTGCTTGTTGTTTTGATAAACCTAGGTTTAGTTTGGATTGGTGCAATCTACGCTTAGAATTTGTAAGGGAATGAGTTGTAGAAATCTTCGTATGTGTAAAATGTGTTTTGTTCAGGTTCAACTATAAAAGGTGGTTTCATTTGTTCATATTTATGGAACCTGAGTTGTTCTAGATTGTGGGATTTGCTAACTCTTGACCTGTGGGATGAGAATTGTAACTGGGATAAATAAGTTCACATACTAAAGTTTAGACGTACCTCTTTACTATCTTAACATTGAGCTACACAAATCTAACTTGTGTATTAAACATGTCCTAAAGGTATCTTTTGTGTTATACTATACAATATCTAGAACAACTCTAAGAATATGTATTTTTTTAAAAAATATTTACTATAAACAAACTTACGTGGTAACCATGTTTTCCCCACTTAGCTGTACTTTACCGATATTTTAAGAGTCTTAGAGATAACCTCCCTCTTTGATATCAATGTCAAATACTGAAACTGACAGTACACCAGTGAAAATCTCTTTGTTCTCATTATTTTTATGAAACACGGTAAAACTAGTACTTGTATTTTGATTTTATAGTTCCTTTTGTGTTTACAAATGAAATGTTGAGCAAAATAGGTTTATCAGGAAGGCTTCCTCTGACAAATTAAACATTCACGTTTATTATTATTATTATTATTTTATATTTATTTTTTCCCCCCTTGCTTTTTGGTGTTATAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCGTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAAGCTTCAATGTAAAAAGTTTCAAATTTTTTTGATAGTGGTCTTAGATTGTGGCTATTCTTGAATCCTACGGCTATTCAGATGTCATTTTTCGTATATTTTGAAGTAATTTTATGATTTATAAATAACTTTATCTTTTGTTGTATATTATGTTGGTTGTGTAACCCATCTACAGTACACATTTGCCGTTGAAATTTTTGTTTATAGTGAATGTGCAAGCCTGTTATTTAATGCATCTATCTGGGGAAG

mRNA sequence

AAGAAATGCAAATTGCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTGAATTTTCTCTCTATCTCTAAAGCACAGTCACTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTTTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTACTTCAAAACCATTCCAAGTTCCTTTTGCTGTGAAGCAAAGATCCACCTCTTCTTCCTGCATTACCAACTTGCATTCTGTTTCTGCGTCGAAATTGAGGCACCAGAACTTCAGAACTCTCGATATCTCTGCTTCTGCTACGGCCGCTGAAGCTGCTGAAGCTGCTCCAGAATCGCTTGTTGCTGATGATTCCGACTCCGAGTCCTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCGTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAAGCTTCAATGTAAAAAGTTTCAAATTTTTTTGATAGTGGTCTTAGATTGTGGCTATTCTTGAATCCTACGGCTATTCAGATGTCATTTTTCGTATATTTTGAAGTAATTTTATGATTTATAAATAACTTTATCTTTTGTTGTATATTATGTTGGTTGTGTAACCCATCTACAGTACACATTTGCCGTTGAAATTTTTGTTTATAGTGAATGTGCAAGCCTGTTATTTAATGCATCTATCTGGGGAAG

Coding sequence (CDS)

ATGATGTTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTTTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTACTTCAAAACCATTCCAAGTTCCTTTTGCTGTGAAGCAAAGATCCACCTCTTCTTCCTGCATTACCAACTTGCATTCTGTTTCTGCGTCGAAATTGAGGCACCAGAACTTCAGAACTCTCGATATCTCTGCTTCTGCTACGGCCGCTGAAGCTGCTGAAGCTGCTCCAGAATCGCTTGTTGCTGATGATTCCGACTCCGAGTCCTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCGTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA

Protein sequence

MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLRHQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA

Homology

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BLAST of Bhi01G001457 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 82/116 (70.69%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 81  AAPESLVADD----SDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGH 140
           AAPE+L A+       S+++P  ++   VVKP EK R+VLKF+WMEKNIG+ LDQ +PGH
Sbjct: 50  AAPETLTAETVTGIDTSDNTP--QQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGH 109

Query: 141 GTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 193
           GTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 110 GTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of Bhi01G001457 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 164.5 bits (415), Expect = 8.7e-41
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 81  AAPESLVADD----SDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGH 140
           AAPE+L A+       S+++P +      +KP EK R+VLKF+WMEKNIG+ LDQ +PGH
Sbjct: 50  AAPETLTAETVTGIDTSDNTPQQ-----TIKPDEKSRVVLKFVWMEKNIGLGLDQHVPGH 109

Query: 141 GTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 193
           GTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 110 GTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 160

[Close]

BLAST of Bhi01G001457 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-40
Identity = 97/195 (49.74%), Postives = 126/195 (64.62%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNTSNFTAQTATSKPF-QVPFAVKQRSTSS---SCIT-NLHSVSASKL 64
           MAVQ   + +F F T++  +Q  +SKP   +  + K + +S    SC T N   + A   
Sbjct: 1   MAVQANQSASFGFRTAS-PSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQGQIPA--- 60

Query: 65  RHQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPV-KEKLGVVVKPMEKPRLVLKF 124
           RH        +   +    +   PE        SES P+ K+K+ V+VKP+EKP++VLKF
Sbjct: 61  RHSCINPGIFAYPPSNLTFSHELPE--------SESPPLGKKKMRVLVKPLEKPKVVLKF 120

Query: 125 IWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQA 184
           +WM+K+IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQA
Sbjct: 121 VWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQA 180

Query: 185 TDIINLWQQGGGNLA 194
           TDIINLWQ  GG+L+
Sbjct: 181 TDIINLWQSSGGDLS 183

[Close]

BLAST of Bhi01G001457 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-49
Identity = 115/192 (59.90%), Postives = 134/192 (69.79%), Query Frame = 0


Query: 2   MLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLRH 61
           MLSMAV  QPN+N     S + +   + KPF+ P     +   S       S S S+L+ 
Sbjct: 1   MLSMAV--QPNINAIAKPSIYQSPKLSLKPFKTPAFANPKPFFS-------SPSFSQLKK 60

Query: 62  QNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWM 121
           +N  +L + A  T ++ A    E     D D +    KEKL V+VKPM+KPRLVLKFIWM
Sbjct: 61  KNNWSLFV-APETISDVAIMGNEV----DIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWM 120

Query: 122 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 181
           EKNIG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDI 178

Query: 182 INLWQQGGGNLA 194
           INLWQQ GGNLA
Sbjct: 181 INLWQQSGGNLA 178

[Close]

BLAST of Bhi01G001457 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.5e-40
Identity = 82/116 (70.69%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 81  AAPESLVADD----SDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGH 140
           AAPE+L A+       S+++P  ++   VVKP EK R+VLKF+WMEKNIG+ LDQ +PGH
Sbjct: 50  AAPETLTAETVTGIDTSDNTP--QQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGH 109

Query: 141 GTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 193
           GTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 110 GTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of Bhi01G001457 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.6e-39
Identity = 97/195 (49.74%), Postives = 126/195 (64.62%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNTSNFTAQTATSKPF-QVPFAVKQRSTSS---SCIT-NLHSVSASKL 64
           MAVQ   + +F F T++  +Q  +SKP   +  + K + +S    SC T N   + A   
Sbjct: 1   MAVQANQSASFGFRTAS-PSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQGQIPA--- 60

Query: 65  RHQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPV-KEKLGVVVKPMEKPRLVLKF 124
           RH        +   +    +   PE        SES P+ K+K+ V+VKP+EKP++VLKF
Sbjct: 61  RHSCINPGIFAYPPSNLTFSHELPE--------SESPPLGKKKMRVLVKPLEKPKVVLKF 120

Query: 125 IWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQA 184
           +WM+K+IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQA
Sbjct: 121 VWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQA 180

Query: 185 TDIINLWQQGGGNLA 194
           TDIINLWQ  GG+L+
Sbjct: 181 TDIINLWQSSGGDLS 183

[Close]

BLAST of Bhi01G001457 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.6e-39
Identity = 87/157 (55.41%), Postives = 111/157 (70.70%), Query Frame = 0


Query: 41  RSTSSSCITNLHSVSASKLRHQNFRTLDISASATAAEAAE----AAPESLVADDSDSESS 100
           R ++ S  ++L  + + +   ++ R+L  +A+A A EA E       +  +  + D+E+ 
Sbjct: 24  RPSTPSSSSSLVHLKSRRPPLRSLRSLTAAAAAAAVEAGEPYFGLGDDEPLGGEGDAEAV 83

Query: 101 PVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEEL 160
              E+  V V   + P LVLKFIWMEKNIGIALDQM+PG G+IPLSPYYFWPRKDAWEEL
Sbjct: 84  VESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEEL 143

Query: 161 KVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 194
           +  LE K WISQKQMIILLNQATDIINLWQQGGG+L+
Sbjct: 144 RAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of Bhi01G001457 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.8e-22
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 113 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 172
           +  LK +W+E NI IA+DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 3   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 62

Query: 173 ILLNQATDIINLWQQGG 190
            LLN+ T++IN WQ+ G
Sbjct: 63  ELLNKTTEVINYWQEEG 78

[Close]

BLAST of Bhi01G001457 vs. NCBI nr
Match: XP_038875586.1 (30S ribosomal protein 3, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 377.5 bits (968), Expect = 7.0e-101
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60
           MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR
Sbjct: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60

Query: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 193

[Close]

BLAST of Bhi01G001457 vs. NCBI nr
Match: XP_008461583.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 7.5e-87
Identity = 171/193 (88.60%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60
           MMLSMAVQLQPNV+FCFNTSNFTAQ A SKPFQ+PFAVKQR+T+SSCI N HSV   KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
            QN RT +ISASA + EA EAA ESLV DDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of Bhi01G001457 vs. NCBI nr
Match: XP_004145640.2 (30S ribosomal protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86
Identity = 170/193 (88.08%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60
           MMLSMAVQLQPNVNFCFNTSNFTAQTA SKPF++PFAV+QR+T+SSCI N H+V   +LR
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHTVFGLQLR 81

Query: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
            QNFRT +ISASA   EA EAA E LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 82  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 141

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 142 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 201

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 202 IINLWQQGGGNLA 213

[Close]

BLAST of Bhi01G001457 vs. NCBI nr
Match: KGN57759.2 (hypothetical protein Csa_011376 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 9.2e-85
Identity = 166/189 (87.83%), Postives = 174/189 (92.06%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLRHQNF 64
           MAVQLQPNVNFCFNTSNFTAQTA SKPF++PFAV+QR+T+SSCI N H+V   +LR QNF
Sbjct: 1   MAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNF 60

Query: 65  RTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKN 124
           RT +ISASA   EA EAA E LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIWMEKN
Sbjct: 61  RTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKN 120

Query: 125 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 184
           IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL
Sbjct: 121 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 180

Query: 185 WQQGGGNLA 194
           WQQGGGNLA
Sbjct: 181 WQQGGGNLA 188

[Close]

BLAST of Bhi01G001457 vs. NCBI nr
Match: KAA0063423.1 (30S ribosomal protein 3 [Cucumis melo var. makuwa] >TYK11685.1 30S ribosomal protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 320.5 bits (820), Expect = 1.0e-83
Identity = 168/193 (87.05%), Postives = 174/193 (90.16%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60
           MMLSMAVQLQPNV+FCFNTSNFTAQ A SKPFQ+PFAVKQR+T+SSCI N HSV   KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
            QN RT +ISASA + EA EAA ESLV DDSDS SSP   KLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSP---KLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 189

[Close]

BLAST of Bhi01G001457 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.6e-87
Identity = 171/193 (88.60%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60
           MMLSMAVQLQPNV+FCFNTSNFTAQ A SKPFQ+PFAVKQR+T+SSCI N HSV   KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
            QN RT +ISASA + EA EAA ESLV DDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of Bhi01G001457 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.2e-87
Identity = 170/193 (88.08%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60
           MMLSMAVQLQPNVNFCFNTSNFTAQTA SKPF++PFAV+QR+T+SSCI N H+V   +LR
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHTVFGLQLR 81

Query: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
            QNFRT +ISASA   EA EAA E LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 82  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 141

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 142 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 201

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 202 IINLWQQGGGNLA 213

[Close]

BLAST of Bhi01G001457 vs. ExPASy TrEMBL
Match: A0A5D3CJH0 (30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00620 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.9e-84
Identity = 168/193 (87.05%), Postives = 174/193 (90.16%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60
           MMLSMAVQLQPNV+FCFNTSNFTAQ A SKPFQ+PFAVKQR+T+SSCI N HSV   KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
            QN RT +ISASA + EA EAA ESLV DDSDS SSP   KLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSP---KLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 194
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 189

[Close]

BLAST of Bhi01G001457 vs. ExPASy TrEMBL
Match: A0A6J1D356 (30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016859 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.6e-81
Identity = 163/202 (80.69%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRST----------SSSCITN 60
           MMLSMAVQLQPN+NFC NTSNF AQ ATSKPFQV F VKQR+T          +SSCI +
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  LHSVSASKLRHQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPME 120
            H  S  K R QNFR L++SA A A EA EAA ES V DDSDS SSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 193
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of Bhi01G001457 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.3e-80
Identity = 161/201 (80.10%), Postives = 174/201 (86.57%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQR--------STSSSCITNLH 60
           MMLSMAVQLQPNVNFC NTS F++  ATSKP QVPFA+KQR        S+ SSCI +++
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 61  SVSASKLRHQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKP 120
           SVS  KLR Q+F+TL +SASA AA+A +A  ES VADDS SESSP KEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGNLA 194
           ILLNQATDIINLWQQGGG+LA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

The following BLAST results are available for this feature:

BLAST of Bhi01G001457 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68590.1	1.7e-41	70.69	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	8.7e-41	68.97	Ribosomal protein PSRP-3/Ycf65	[more]
AT5G15760.1	3.3e-40	49.74	Ribosomal protein PSRP-3/Ycf65	[more]

BLAST of Bhi01G001457 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	1.7e-49	59.90	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
Q9SX22	2.5e-40	70.69	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
Q9LFV0	4.6e-39	49.74	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
O48609	4.6e-39	55.41	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
P51351	8.8e-22	57.14	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of Bhi01G001457 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875586.1	7.0e-101	100.00	30S ribosomal protein 3, chloroplastic-like [Benincasa hispida]	[more]
XP_008461583.1	7.5e-87	88.60	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]	[more]
XP_004145640.2	1.3e-86	88.08	30S ribosomal protein 3, chloroplastic [Cucumis sativus]	[more]
KGN57759.2	9.2e-85	87.83	hypothetical protein Csa_011376 [Cucumis sativus]	[more]
KAA0063423.1	1.0e-83	87.05	30S ribosomal protein 3 [Cucumis melo var. makuwa] >TYK11685.1 30S ribosomal pro...	[more]

BLAST of Bhi01G001457 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CF24	3.6e-87	88.60	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A0A0L9T8	6.2e-87	88.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]
A0A5D3CJH0	4.9e-84	87.05	30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D356	6.6e-81	80.69	30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K853	4.3e-80	80.10	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 113..191 e-value: 2.8E-33 score: 115.8
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 141..187 e-value: 1.0E-26 score: 92.8
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..193
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001457	Bhi01M001457	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0003735	structural constituent of ribosome