Bhi01G001433 (gene) Wax gourd (B227) v1

Overview
NameBhi01G001433
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionTranscription elongation factor SPT4 homolog
Locationchr1: 40664303 .. 40670223 (-)
RNA-Seq ExpressionBhi01G001433
SyntenyBhi01G001433
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAAATTGGTTTTTGAACCATTTATTTTGAAGCCCGTATTTCTATTTCTCCTTCTTCCTCTCTTGGTCAGTACTACCATTCGTAATTTCGTTCCCTAGTTTTCTTTTCTGCCGATGCTGTGCACACCGGCTCTCTGACGCCGCCCGCCGGACATTACTGCCGTCGACCCACTGCCGCGCTGCCGCCGCTACATCCAAGTAACTTCTTCATTTATATAAAGTTTTCTCTCTCCCTCCCTAGAGTGGGGGAATCTCACCTCATACATCGAATTACTAATGTTGTTAGAGTAATCAGCAGAAGGATCCAGTAGGTGATTGGAAACTAGCAGGGAGGGATCGGAAGTAATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTGCAGTCTCCTATTTTCAAGAAGCTTGGGTTGTCCTTATGAATGCTTGCATTCAATCTCTAATTGTTCAAGATCTTTGAACTTCCGGAATTGTTTGTTATATTGAGTATTGGTCATGCAAACAGTTCCGAGAATCGGGCTGTGAGAATTGCCCATTCTTCAAGATGGACGAAGACCACGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGTGCGTATAATTTTCTTCTCCTGTATTCTTTTCTGGTGTTACTGTTTGTCATTTTTTTGTAACTAGTTTGCTTCCACGGTGCCTTGGATAGAAGTTTGGACATGACATATAATTTCAGTTATTTCAATGAAAATCTACAAAATTTGTACATGAAACCTTAAAAGATTCAGTCAGTATTAAAAGAAGAAATATTCAGCTTATGATCATGCTGTATTTCACTTACATTTGTTGTACCCTTTTTCATATTTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCTCTTTCTTCTTTCTCACCCCGTCCCATTAATGTTTTGTAACTAAAGATGTTGTTTTTGACAAAGAATTGACTAACCTTAGTACTTGTTGTTCAATTAGCGGTTAATGTCTTCCTCTCTGACTTTTTAACTTCCGTGGCCAAGTTTCAACTTTCAAGAACATTTGTAGATAGAAGAAAAGAAAGGATGTCATTTTTTCAATATAGGAATTTATCCATGTATTCCGAGCTTAATATTAGGACAGTGAACAGTTGTTCATTTTAAGTACGGACCTGTCCACTTGCTGATATCCTTTGAATTAAAATAGTAAGAAACTGCTATGTGTCTGCTGAACGCCTGAAAACTGACCAACATCCCAAATTTTTGTTAGTGGATAATGAATTGCATGCGCTATAGTGTTTAGTTTACTTATTTGTATGCTTGAATGAAAAGGTCAGCAGTTTGGAGCAATGGACTTTATTTTTATTATAAGATCAACGTTGATACAATTGTATCAACTGTTGAGTTGTACCTGGAATTGATGAAACCAACATTTCTTTTCTTTTTTTTATATATTTTTTTATTTTTCATTTTTTCTCCTTCCTTCTTTCCCTCTTCAAATTTTGTTGTCTTAACTAGCTTTCTTTTCACCTAACTATAATCATTCATTAAATTTCTTGCTTGTAACCTTTTAGTTTTGTAATTTGTTTGCTCTATTGGCATTTGATTTTTGAATTTATATTTCCTGCCAATCTTGCAGGAAGATTCGTTCCCGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGGTTTGTAAACAGTCATTACGTAGCATAAATTTCACCATGACATGTTTACATGTTTCATTCTTCTGTGTTCATCATGTACCAAAGCCATCAGGAATATCCATGGCCATTGGATGATTGTTTCTGGTTAAGGATTTTTCATTTGATTTACTATTCTTATTTAATTCTCTCTCCCACTCTCTATTTTTGTTCTTTTTCTTTGATTCTTTGTGTTGTGTAAGTGTGACCTAATAATAAATTCAGTGGCTTCTCTTGACTGTAACTTCAAAAACTAAACATCAGGACTACTGTTAAAGGACCCAACCACCTAGATTTCAATTCTCATGGGCATAATTTGAGGCATGAATTGTTGAGCAACACCTATTGACTCAAACGAAGTTTATCTTCTAGTGTACTTATTGCGCCATGCCTTGGTTCTCTCCTTACAAATTCAAGCATTCTCATATGCCTCATTTCATAATTTATTCATCTTGTTCAATTCTTCAATCTCTTCTTGTCGATCCATATTCTACAGTTTCATTGTTCAATCTGCCTTATCTTCCAACTCTATTAGAAGGTGACATGTTTTGCCAAAAACTGCATGTAAGGAGATGTCCCATGAGGAGTTTTGAATGCAGTCCTACATGCCTACAATGCATCATTTAATTTCTTTGTCTAATCTTTGAGTGAATGGTGCATTCTCTTCTCAAGGGTCTTTCACCTTTCTGTTGCAAAATTCTATTTGTCCATTTGCTTGAGGGTGATAGGCTAAAGTTATCCTATGTCTTACCCTACATTTAGCCAAGAGTGCTGCAAGTGCTTGTTGGAGTGTGACCCTCCACTTATGATTGCTCATGGCATCCCAAATCTTGTAAAAATGTTATTTTGAGAAAATTTGGAACTACCTTTCCTTCATTTGTAGGAGTAGTAATTGCCTTCACCTATGTTGACATGTGATCAATAGCAAAATTATTTATTGTTGTACAAAGATGGGAAGGCCCCATGAAATTCGCTCCCCACCCATCAAATAATTTCACTTCAAAATGTCTTGAAATAACATTTTATCTTTTCTAGAGATATTACTTGTTCGTTGACATTACGTACAATTGAATAAAAACTTCAAATATCGTGAAATCTACCTTAAATAACTCAATGCACTTTTTGACCATGTCTGAAAAGATCACCATTGTGCACCTTTGTAATGTGATGGGTGCGGTGCATAGCAAAGATCAAAGGGCATTCTCCTAAATGCAGAAGTACCATACGGGATGTGGAAGCAGTCTCTTCTTGATATTTTATTGCAACTTTTATTTGATGATATTGATAGGAATGCTATTAGAGTATTATAAAGAAATATTAGTAATTAGTTAAGAGAGTTTGTTCTGGAATTTGGTTATAAATAAAGCCTAGGGGAATGAGGAAGGTAGGCAATATTGTGGTGTGTGAAATAGGGTACAAGAATGATCTCAAGAGGTACCTTGATATCAAATTTGACTTACACATCGATTTATCTTATGAAGACTTCTTTAATTCGATTGATTTAAAGAGGATAAAAAAGGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTTGAATGAACTAGAAGATTGTCCAAAGGTTCTCTTAGAGCATGATCTTACTTTGAATGACTCAGATGACTATGGTCCTGAGGTACGTACTCCTTTTCTTCCCATAGATGACTTTTCTCCACAAGAAGAGCTTGTGGATGAAGTTAAGCATTCATCATCTATTCATCCTACAGGGAGTTCTAACTGGGTGAAGCCAAGGTACATGAAAGCTTTCCCTCTACATTATTCTCGAAAGAACGAAGTTCCCAGTGTTCTCGACTGTGAAGAGAGAAATTTTGATGCTTTAGAAGAATCTTGTACTCATCTTTTGATTTCTTCGTCAGTCGCTTTAAAACTGTTCTCAATACTTTTGGAGAGAATAATTACCTTATTCATTAATTAGGTTGTAGATACATACATATACACACACACACACATATATATAGGCAACTAAGAAACCCTAATTTAGGAGATATAAAATTATGATAAAGGACAACTAATCATAATTACAATATAAGTATATATTATAACACTCCCCCTCAAGTTGGAGCAAATATGCCAATCATGTTCAGCTTGTTGCATAGATAACTTATTCTTGCTCCGTTTACTCCTTTAGTAAGGATATCTCCCAATTGTTCTCTAGTCTTCACATATCCTGTAGATATCAACCCTTCTTGTATTTTCTCGCGAATAAAATGATAATCCACTTCAGTATATTTAGTTTGTTCATGAAATACTGGGTTGGATGCAATGTGGAGAGCAACTTGATTATTGCACCATAGTTTAGCTGGCACAGTAACACTAAAGCCCATCTCAGATAAAAGTTGATGTATCTACACTATTTCACATATAGATTGTGCCATAACTCTATATTCCAACTTAGCACTCGAACGTGAAACTACATTTTGTTTCTTACTTTTCCATGACACCAAGTTTCCTCCTACAAAAACACAATATCCAAAGGTCGATCTCCTATCTTCTCGAGGTCCAACCTAATCATCATCTGAAAAACATTCAATCCTTGTATGATCATGATCTTTATATAAGATCTCAAGTCCAGATGCAACTTGTGAGTTTTTTGGTTTGATGTTTCTCTTGGTTTGGTTTGGTTTGGTTTGTTTTTATTCGCTTTGTCTCTTGGATTCTCATGGGGGCTCTCTCTCTCAGTTTTTTGTGCTTCATAGTTGAAGGTTTTTCGTCTTATTTAGCTTGTATTCTTCATCAGTTTGTTTGCCCCTTATTTTTGTCTTCTCATTGAATGTCTTGTATTTTGGCGTATTTGTCTCTTTCATTTTATCAATGAAAATTGTCTAAAATCCCCAGCAACCATCAAGATAACATTAGGATTTATGCCGTGCCAATCAGTCTCACGTTTGGTCAATAAAGGGCAACAATTCATTATTCCTCGTTCTTTACCACTGTTGTACCTCCTTTCTTTGTTACCAAATACCACATGTACTAGACTCACCCATTTCAAAACTTCACCCTGAACCTCTTTCATTTTCTGCTCGAGTCTCCTTTGCACTTCTATTGATGGTGTAATCTCCTCTTCTAATAAAATTTTGTGCATACACACAATGGGCTCTTTACCTATGTACTTGCCAAAGACCATCAGATTGCTTGTTTATGATTCCTAGTCGCATGCAACAACCATTTTTTCCCCTTGATTAGACAACTCTACTTAGATGATTGCTGAAGGAGTGGACTCTTCACTCAAGTATATATATCTCAGATGAGATAGTAGCACCTTCTTGGATTTCATGGGTTTTGTTAATATCCAAAATTGTTGATAATGTAGCTAGGTATAACAAAGTGGGGGGTGCAGAGTAGCTTTACAAGTCCTACATCCTGAAGGGCTGGGGGGAGATTTTTTGAAGCGCATTAATTATTTTCAAAATCTACCTTTGAAATGCCTGAACAGGAATCTTTTGGTGTTGTATTTAGTACGTTAAAATGCATACATGACCCGTTTTAGCCCTGTAGTTGAAATGTTTCATTTTACTATTGCTGTCTAAGTAGTTGAACATAACTTTCTAAGGTTGTAGTTCTTATATATTCTTCATCCTATTGTTTTCTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCTAAACGTGTTTAACTGTATGTTATCTCTAGTTTATTCTGATTACAAAGAATAATTCCACCTTGTTCATGTTGTAGTATTTTTAGTTGAACTAGCATTTAGTGTGTGTTGTCTTTTGATTGAACTGAACAGAAGGTATAGTTGCTAACACCTTGCATTGTACATCTTAATTTGCTTCCCCTTGCGTTTCTTTATTGCCAATTAAAATACCTACTCACTGTTTGAAGAGGTTGAATTTGAGTGGCTTAAAACACGGGTTTAACCAAGGACTGTTAGTTTATTGCTCCAAGGAGAAAATATGTTGGCATATGAAAAAGACGTAGATTTGATTACAGATGGATATCGTGTGTACTTAATTGACAAG

mRNA sequence

CCAAAATTGGTTTTTGAACCATTTATTTTGAAGCCCGTATTTCTATTTCTCCTTCTTCCTCTCTTGGTCAGTACTACCATTCGTAATTTCGTTCCCTAGTTTTCTTTTCTGCCGATGCTGTGCACACCGGCTCTCTGACGCCGCCCGCCGGACATTACTGCCGTCGACCCACTGCCGCGCTGCCGCCGCTACATCCAAAGTAATCAGCAGAAGGATCCAGTAGGTGATTGGAAACTAGCAGGGAGGGATCGGAAGTAATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTCCGAGAATCGGGCTGTGAGAATTGCCCATTCTTCAAGATGGACGAAGACCACGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCCGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCTAAACGTGTTTAACTGTATGTTATCTCTAGTTTATTCTGATTACAAAGAATAATTCCACCTTGTTCATGTTGTAGTATTTTTAGTTGAACTAGCATTTAGTGTGTGTTGTCTTTTGATTGAACTGAACAGAAGGTATAGTTGCTAACACCTTGCATTGTACATCTTAATTTGCTTCCCCTTGCGTTTCTTTATTGCCAATTAAAATACCTACTCACTGTTTGAAGAGGTTGAATTTGAGTGGCTTAAAACACGGGTTTAACCAAGGACTGTTAGTTTATTGCTCCAAGGAGAAAATATGTTGGCATATGAAAAAGACGTAGATTTGATTACAGATGGATATCGTGTGTACTTAATTGACAAG

Coding sequence (CDS)

ATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTCCGAGAATCGGGCTGTGAGAATTGCCCATTCTTCAAGATGGACGAAGACCACGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCCGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCTAAACGTGTTTAA

Protein sequence

MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Homology
[Close]
BLAST of Bhi01G001433 vs. TAIR 10
Match: AT5G63670.1 (SPT4 homolog 2 )

HSP 1 Score: 223.8 bits (569), Expect = 7.2e-59
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]
BLAST of Bhi01G001433 vs. TAIR 10
Match: AT5G08565.1 (Transcription initiation Spt4-like protein )

HSP 1 Score: 218.4 bits (555), Expect = 3.0e-57
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of Bhi01G001433 vs. TAIR 10
Match: AT5G08565.2 (Transcription initiation Spt4-like protein )

HSP 1 Score: 180.3 bits (456), Expect = 9.2e-46
Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           G +S            L  G+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GFVSDRREINLTHCNILFPGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of Bhi01G001433 vs. TAIR 10
Match: AT5G63670.2 (SPT4 homolog 2 )

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-40
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 1  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
          M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1  MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61 GIISVMDPARSWAARWLRI 80
          GIISVMDP+RSWAARWLRI
Sbjct: 61 GIISVMDPSRSWAARWLRI 79

[Close]
BLAST of Bhi01G001433 vs. ExPASy Swiss-Prot
Match: Q94C60 (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g63670 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-57
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]
BLAST of Bhi01G001433 vs. ExPASy Swiss-Prot
Match: Q8LCQ3 (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 218.4 bits (555), Expect = 4.3e-56
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of Bhi01G001433 vs. ExPASy Swiss-Prot
Match: Q6DGQ0 (Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.4e-20
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 8  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
          +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M
Sbjct: 6  VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 65

Query: 68 DPARSWAARWLRIGRFVPGCYTLAVSEALP 97
           P  SW A+W RIG F PG Y + V+  LP
Sbjct: 66 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94

[Close]
BLAST of Bhi01G001433 vs. ExPASy Swiss-Prot
Match: Q5RFH5 (Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of Bhi01G001433 vs. ExPASy Swiss-Prot
Match: P63271 (Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of Bhi01G001433 vs. NCBI nr
Match: XP_038881174.1 (transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881183.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881192.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 1.6e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. NCBI nr
Match: XP_008461561.1 (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461562.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461563.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_011651356.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651357.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651358.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_031739203.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >KGN57714.1 hypothetical protein Csa_010059 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 4.5e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. NCBI nr
Match: XP_022143259.1 (transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143260.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143261.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 1.3e-62
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. NCBI nr
Match: XP_022948256.1 (transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948257.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948258.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022998096.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998097.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998098.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_023523239.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >XP_023523240.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >KAG6607059.1 Transcription elongation factor SPT4-like 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036760.1 Transcription elongation factor SPT4-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.8 bits (634), Expect = 2.3e-62
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. NCBI nr
Match: XP_012065876.1 (transcription elongation factor SPT4 homolog 2 [Jatropha curcas] >XP_012074304.1 transcription elongation factor SPT4 homolog 2 isoform X2 [Jatropha curcas] >XP_021621125.1 transcription elongation factor SPT4 homolog 2 [Manihot esculenta] >OAY59109.1 hypothetical protein MANES_01G004880v8 [Manihot esculenta])

HSP 1 Score: 244.2 bits (622), Expect = 5.5e-61
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYIPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. ExPASy TrEMBL
Match: A0A1S3CFH1 (Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC103500131 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.2e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. ExPASy TrEMBL
Match: A0A0A0L9Q3 (Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.2e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. ExPASy TrEMBL
Match: A0A6J1CNB4 (Transcription elongation factor SPT4 homolog OS=Momordica charantia OX=3673 GN=LOC111013173 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.4e-63
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. ExPASy TrEMBL
Match: A0A6J1K6X8 (Transcription elongation factor SPT4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492846 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPKRV 116

[Close]
BLAST of Bhi01G001433 vs. ExPASy TrEMBL
Match: A0A6J1G8V8 (Transcription elongation factor SPT4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451985 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPKRV 116

The following BLAST results are available for this feature:
BLAST of Bhi01G001433 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63670.17.2e-5984.48SPT4 homolog 2 [more]
AT5G08565.13.0e-5780.17Transcription initiation Spt4-like protein [more]
AT5G08565.29.2e-4668.10Transcription initiation Spt4-like protein [more]
AT5G63670.21.5e-4089.87SPT4 homolog 2 [more]
BLAST of Bhi01G001433 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94C601.0e-5784.48Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 G... [more]
Q8LCQ34.3e-5680.17Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q6DGQ08.4e-2048.89Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1[more]
Q5RFH51.9e-1941.35Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=... [more]
P632712.4e-1941.35Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2... [more]
BLAST of Bhi01G001433 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038881174.11.6e-63100.00transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881183... [more]
XP_008461561.14.5e-6399.14PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008... [more]
XP_022143259.11.3e-6298.28transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_0221432... [more]
XP_022948256.12.3e-6297.41transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_02294825... [more]
XP_012065876.15.5e-6194.83transcription elongation factor SPT4 homolog 2 [Jatropha curcas] >XP_012074304.1... [more]
BLAST of Bhi01G001433 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CFH12.2e-6399.14Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A0A0L9Q32.2e-6399.14Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3... [more]
A0A6J1CNB46.4e-6398.28Transcription elongation factor SPT4 homolog OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1K6X81.1e-6297.41Transcription elongation factor SPT4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1G8V81.1e-6297.41Transcription elongation factor SPT4 homolog OS=Cucurbita moschata OX=3662 GN=LO... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 16..92
e-value: 2.9E-42
score: 156.4
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 16..92
e-value: 9.8E-33
score: 112.1
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 14..110
e-value: 2.58693E-49
score: 150.467
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 14..116
e-value: 2.0E-40
score: 139.3
IPR009287Transcription initiation Spt4PIRSFPIRSF025023Spt4coord: 2..116
e-value: 2.2E-48
score: 160.9
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 1..116
NoneNo IPR availablePANTHERPTHR12882:SF4TRANSCRIPTION ELONGATION FACTOR SPT4 HOMOLOG 2coord: 1..116
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 11..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M001433Bhi01M001433mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0006397 mRNA processing
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0034243 regulation of transcription elongation from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0032044 DSIF complex
cellular_component GO:0005634 nucleus
molecular_function GO:0000993 RNA polymerase II complex binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0008270 zinc ion binding