Bhi01G001426 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G001426
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	ATP synthase subunit beta, chloroplastic
Location	chr1: 40442182 .. 40442379 (-)
RNA-Seq Expression	Bhi01G001426
Synteny	Bhi01G001426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATAAATCCTACTACTTCTGGTCCTGAAGTTTCCACGCTTGAAAAAAACAACTTGGGACGTATCGCTCAAATCATTGGTCCGGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTGAAAGGTCGAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTATAG

mRNA sequence

ATGAGAATAAATCCTACTACTTCTGGTCCTGAAGTTTCCACGCTTGAAAAAAACAACTTGGGACGTATCGCTCAAATCATTGGTCCGGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTGAAAGGTCGAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTATAG

Coding sequence (CDS)

ATGAGAATAAATCCTACTACTTCTGGTCCTGAAGTTTCCACGCTTGAAAAAAACAACTTGGGACGTATCGCTCAAATCATTGGTCCGGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTGAAAGGTCGAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTATAG

Protein sequence

MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEINVTCEV

Homology

[Close]

BLAST of Bhi01G001426 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-28
Identity = 58/65 (89.23%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MR NPTTS PEVS  EK NLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQEIN
Sbjct: 1  MRTNPTTSNPEVSIREKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTLGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy Swiss-Prot
Match: A6MM43 (ATP synthase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=atpB PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLE+ NLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ+IN
Sbjct: 1  MRINPTTSGPEVSTLEEKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy Swiss-Prot
Match: Q2PMV0 (ATP synthase subunit beta, chloroplastic OS=Glycine max OX=3847 GN=atpB PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-29
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVS LEK NLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDT GQ+IN
Sbjct: 1  MRINPTTSGPEVSALEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTVGQQIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy Swiss-Prot
Match: Q4VZI5 (ATP synthase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=atpB PE=3 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTS PEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+D +GQEIN
Sbjct: 1  MRINPTTSSPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDISGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy Swiss-Prot
Match: Q9MRR1 (ATP synthase subunit beta, chloroplastic OS=Cinnamomum camphora OX=13429 GN=atpB PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-29
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGP VSTLEK NLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ+IN
Sbjct: 1  MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy Swiss-Prot
Match: Q0ZJ13 (ATP synthase subunit beta, chloroplastic OS=Vitis vinifera OX=29760 GN=atpB PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-29
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGP VSTLEK NLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ+IN
Sbjct: 1  MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. NCBI nr
Match: YP_009420801.1 (ATP synthase CF1 beta subunit [Citrullus colocynthis] >ASP44503.1 ATP synthase CF1 beta subunit [Citrullus colocynthis])

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGKDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. NCBI nr
Match: YP_009751997.1 (CF1 subunit beta [Cionosicys macranthus] >QIT05238.1 CF1 subunit beta [Cionosicys macranthus])

HSP 1 Score: 134.0 bits (336), Expect = 4.5e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. NCBI nr
Match: QIT04057.1 (CF1 subunit beta [Luffa aegyptiaca] >QKX48566.1 ATP synthase CF1 beta subunit [Luffa aegyptiaca])

HSP 1 Score: 134.0 bits (336), Expect = 4.5e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. NCBI nr
Match: YP_009752082.1 (CF1 subunit beta [Dendrosicyos socotranus] >YP_009753096.1 CF1 subunit beta [Corallocarpus boehmii] >QIT05492.1 CF1 subunit beta [Dendrosicyos socotranus] >QIT06168.1 CF1 subunit beta [Corallocarpus boehmii])

HSP 1 Score: 134.0 bits (336), Expect = 4.5e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. NCBI nr
Match: YP_010131101.1 (ATP synthase CF1 beta subunit [Benincasa hispida] >QPZ75748.1 ATP synthase CF1 beta subunit [Benincasa hispida] >QSQ72317.1 CF1 subunit beta [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 4.5e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy TrEMBL
Match: A0A343F2C3 (ATP synthase subunit beta, chloroplastic OS=Citrullus colocynthis OX=252529 GN=atpB PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGKDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy TrEMBL
Match: A0A346QNJ3 (ATP synthase subunit beta, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=atpB PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy TrEMBL
Match: A0A6H0EQM2 (ATP synthase subunit beta, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=atpB PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy TrEMBL
Match: A0A6H0EV22 (ATP synthase subunit beta, chloroplastic OS=Corallocarpus boehmii OX=386154 GN=atpB PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

[Close]

BLAST of Bhi01G001426 vs. ExPASy TrEMBL
Match: A0A6H0ER26 (ATP synthase subunit beta, chloroplastic OS=Hodgsonia heteroclita OX=386184 GN=atpB PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VTCEV 66
          VTCEV
Sbjct: 61 VTCEV 65

The following BLAST results are available for this feature:

BLAST of Bhi01G001426 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00480.1	1.7e-28	89.23	ATP synthase subunit beta	[more]

BLAST of Bhi01G001426 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MM43	2.5e-29	92.31	ATP synthase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=atpB ...	[more]
Q2PMV0	2.5e-29	93.85	ATP synthase subunit beta, chloroplastic OS=Glycine max OX=3847 GN=atpB PE=3 SV=...	[more]
Q4VZI5	3.3e-29	93.85	ATP synthase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=atpB PE=3...	[more]
Q9MRR1	5.6e-29	92.31	ATP synthase subunit beta, chloroplastic OS=Cinnamomum camphora OX=13429 GN=atpB...	[more]
Q0ZJ13	5.6e-29	92.31	ATP synthase subunit beta, chloroplastic OS=Vitis vinifera OX=29760 GN=atpB PE=3...	[more]

BLAST of Bhi01G001426 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009420801.1	3.5e-28	98.46	ATP synthase CF1 beta subunit [Citrullus colocynthis] >ASP44503.1 ATP synthase C...	[more]
YP_009751997.1	4.5e-28	98.46	CF1 subunit beta [Cionosicys macranthus] >QIT05238.1 CF1 subunit beta [Cionosicy...	[more]
QIT04057.1	4.5e-28	98.46	CF1 subunit beta [Luffa aegyptiaca] >QKX48566.1 ATP synthase CF1 beta subunit [L...	[more]
YP_009752082.1	4.5e-28	98.46	CF1 subunit beta [Dendrosicyos socotranus] >YP_009753096.1 CF1 subunit beta [Cor...	[more]
YP_010131101.1	4.5e-28	98.46	ATP synthase CF1 beta subunit [Benincasa hispida] >QPZ75748.1 ATP synthase CF1 b...	[more]

BLAST of Bhi01G001426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A343F2C3	1.7e-28	98.46	ATP synthase subunit beta, chloroplastic OS=Citrullus colocynthis OX=252529 GN=a...	[more]
A0A346QNJ3	2.2e-28	98.46	ATP synthase subunit beta, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=a...	[more]
A0A6H0EQM2	2.2e-28	98.46	ATP synthase subunit beta, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=atpB PE=...	[more]
A0A6H0EV22	2.2e-28	98.46	ATP synthase subunit beta, chloroplastic OS=Corallocarpus boehmii OX=386154 GN=a...	[more]
A0A6H0ER26	2.2e-28	98.46	ATP synthase subunit beta, chloroplastic OS=Hodgsonia heteroclita OX=386184 GN=a...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.10.170		coord: 18..65 e-value: 6.5E-15 score: 57.0
None	No IPR available	PANTHER	PTHR15184:SF65	F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT	coord: 1..65
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 1..65
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 23..64 e-value: 1.5E-8 score: 35.0
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 19..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001426	Bhi01M001426	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism