Bhi01G000828 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G000828
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotransposable element Tf2
Location	chr1: 22130821 .. 22131102 (-)
RNA-Seq Expression	Bhi01G000828
Synteny	Bhi01G000828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTCCAACTAGGACCATACAAAAACTTCAAAGCCTTAAGCAAGGCATTAAGGATCAAGTGGTGGGAAAAATTTGATTACTCCAATCTAGAAGCGTCAAAGTTGAAAGATTGGTTCAAAGCCAATGTTCATCTACAGGATCTATCTCGCCAGGAAGATGAACAATTCACTTTGACAAAAAATTCAATTATAAGTTCTCTAGCAGGACCAGGATCACACGTTGATTTTACTTCAGTCCTCAATACAGTCGTCAGGCAATTATCAGACCCTGACGAAACTTAA

mRNA sequence

AATTTCCAACTAGGACCATACAAAAACTTCAAAGCCTTAAGCAAGGCATTAAGGATCAAGTGGTGGGAAAAATTTGATTACTCCAATCTAGAAGCGTCAAAGTTGAAAGATTGGTTCAAAGCCAATGTTCATCTACAGGATCTATCTCGCCAGGAAGATGAACAATTCACTTTGACAAAAAATTCAATTATAAGTTCTCTAGCAGGACCAGGATCACACGTTGATTTTACTTCAGTCCTCAATACAGTCGTCAGGCAATTATCAGACCCTGACGAAACTTAA

Coding sequence (CDS)

AATTTCCAACTAGGACCATACAAAAACTTCAAAGCCTTAAGCAAGGCATTAAGGATCAAGTGGTGGGAAAAATTTGATTACTCCAATCTAGAAGCGTCAAAGTTGAAAGATTGGTTCAAAGCCAATGTTCATCTACAGGATCTATCTCGCCAGGAAGATGAACAATTCACTTTGACAAAAAATTCAATTATAAGTTCTCTAGCAGGACCAGGATCACACGTTGATTTTACTTCAGTCCTCAATACAGTCGTCAGGCAATTATCAGACCCTGACGAAACTTAA

Protein sequence

NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTKNSIISSLAGPGSHVDFTSVLNTVVRQLSDPDET

Homology

[Close]

BLAST of Bhi01G000828 vs. NCBI nr
Match: KAA0040828.1 (polyprotein [Cucumis melo var. makuwa] >TYK17804.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]

BLAST of Bhi01G000828 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]

BLAST of Bhi01G000828 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]

BLAST of Bhi01G000828 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]

BLAST of Bhi01G000828 vs. NCBI nr
Match: TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 345 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFFLTK 404

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 405 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 436

[Close]

BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]

BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7TD15 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00520 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]

BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]

BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]

BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.4e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 345 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFFLTK 404

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 405 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 436

The following BLAST results are available for this feature:

BLAST of Bhi01G000828 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G000828 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G000828 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040828.1	8.5e-28	66.30	polyprotein [Cucumis melo var. makuwa] >TYK17804.1 polyprotein [Cucumis melo var...	[more]
KAA0063832.1	8.5e-28	66.30	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0056777.1	8.5e-28	66.30	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0068172.1	8.5e-28	66.30	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK28082.1	1.1e-27	66.30	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Bhi01G000828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVN1	4.1e-28	66.30	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TD15	4.1e-28	66.30	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00520 PE...	[more]
A0A5A7V6D1	4.1e-28	66.30	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VIK9	4.1e-28	66.30	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SQU5	5.4e-28	66.30	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000828	Bhi01M000828	mRNA