Bhi01G000828 (gene) Wax gourd (B227) v1

Overview
NameBhi01G000828
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotransposable element Tf2
Locationchr1: 22130821 .. 22131102 (-)
RNA-Seq ExpressionBhi01G000828
SyntenyBhi01G000828
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTCCAACTAGGACCATACAAAAACTTCAAAGCCTTAAGCAAGGCATTAAGGATCAAGTGGTGGGAAAAATTTGATTACTCCAATCTAGAAGCGTCAAAGTTGAAAGATTGGTTCAAAGCCAATGTTCATCTACAGGATCTATCTCGCCAGGAAGATGAACAATTCACTTTGACAAAAAATTCAATTATAAGTTCTCTAGCAGGACCAGGATCACACGTTGATTTTACTTCAGTCCTCAATACAGTCGTCAGGCAATTATCAGACCCTGACGAAACTTAA

mRNA sequence

AATTTCCAACTAGGACCATACAAAAACTTCAAAGCCTTAAGCAAGGCATTAAGGATCAAGTGGTGGGAAAAATTTGATTACTCCAATCTAGAAGCGTCAAAGTTGAAAGATTGGTTCAAAGCCAATGTTCATCTACAGGATCTATCTCGCCAGGAAGATGAACAATTCACTTTGACAAAAAATTCAATTATAAGTTCTCTAGCAGGACCAGGATCACACGTTGATTTTACTTCAGTCCTCAATACAGTCGTCAGGCAATTATCAGACCCTGACGAAACTTAA

Coding sequence (CDS)

AATTTCCAACTAGGACCATACAAAAACTTCAAAGCCTTAAGCAAGGCATTAAGGATCAAGTGGTGGGAAAAATTTGATTACTCCAATCTAGAAGCGTCAAAGTTGAAAGATTGGTTCAAAGCCAATGTTCATCTACAGGATCTATCTCGCCAGGAAGATGAACAATTCACTTTGACAAAAAATTCAATTATAAGTTCTCTAGCAGGACCAGGATCACACGTTGATTTTACTTCAGTCCTCAATACAGTCGTCAGGCAATTATCAGACCCTGACGAAACTTAA

Protein sequence

NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTKNSIISSLAGPGSHVDFTSVLNTVVRQLSDPDET
Homology
[Close]
BLAST of Bhi01G000828 vs. NCBI nr
Match: KAA0040828.1 (polyprotein [Cucumis melo var. makuwa] >TYK17804.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]
BLAST of Bhi01G000828 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]
BLAST of Bhi01G000828 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]
BLAST of Bhi01G000828 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]
BLAST of Bhi01G000828 vs. NCBI nr
Match: TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 345 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFFLTK 404

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 405 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 436

[Close]
BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]
BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7TD15 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00520 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]
BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]
BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 291 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTK 350

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 351 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 382

[Close]
BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match: A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.4e-28
Identity = 61/92 (66.30%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 1   NFQLGPYKNFKALSKALRIKWWEKFDYSNLEASKLKDWFKANVHLQDLSRQEDEQFTLTK 60
           NFQLGP  NFKALSK+LRIKWWEKF+YS+LE +K+KDWFKAN+HLQD++RQEDE F LTK
Sbjct: 345 NFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFFLTK 404

Query: 61  NSIISSLAGPGSHVDFTSVLNTVVRQLSDPDE 93
           N+++S+LAG  +  +F SV+N VV  LSD ++
Sbjct: 405 NAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 436

The following BLAST results are available for this feature:
BLAST of Bhi01G000828 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G000828 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi01G000828 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040828.18.5e-2866.30polyprotein [Cucumis melo var. makuwa] >TYK17804.1 polyprotein [Cucumis melo var... [more]
KAA0063832.18.5e-2866.30Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
KAA0056777.18.5e-2866.30Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran... [more]
KAA0068172.18.5e-2866.30Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
TYK28082.11.1e-2766.30Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
BLAST of Bhi01G000828 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UVN14.1e-2866.30Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7TD154.1e-2866.30Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00520 PE... [more]
A0A5A7V6D14.1e-2866.30Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7VIK94.1e-2866.30Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7SQU55.4e-2866.30Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M000828Bhi01M000828mRNA