Bhi01G000827 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G000827
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Gag-pro-like protein
Location	chr1: 22102390 .. 22102884 (-)
RNA-Seq Expression	Bhi01G000827
Synteny	Bhi01G000827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCAAAGACAATGATAAGGAGTGGTTATCATATACATGGAGGTTTGGGAAAGCATAATCAAGGAAGTTCAGAAGTGATTTCTCTTCCTAAGGCAAAGGAAAGATTTGGATTGGGGTATAAGCCGACAACTTCTGAATGGGAGAAGGTTCGAGCAGAGAAAAAGGAAAATAGAAGTGCACGTCTCGAAGGATATAAGGTTGGACCAGGTAGAATGCATATACCTTAACTGTCTTAAACTTTCAAGCCAAGGGAATTACTTTTCAACAATAAGCAGCCAAGGGAATGCACCAAGGGATTTGAGGCCGCAGTTACTGTTATCCCTAAAAACACTCATTCATCTTGTCAATTGGTTTATCCTTGTCCGCCAGAATTTGAGCTGAACAATTGGGAGATCAAGAAGATGTCAAGCATCACTAAAGGATTGCCAAAGAAATTATGTTTGTTATGCACCCTATGGCTATGCCTAAGGCCACAAGGAGTCCTTTGTTAA

mRNA sequence

ATGATTGCAAAGACAATGATAAGGAGTGGTTATCATATACATGGAGGTTTGGGAAAGCATAATCAAGGAAGTTCAGAAGTGATTTCTCTTCCTAAGGCAAAGGAAAGATTTGGATTGGGGTATAAGCCGACAACTTCTGAATGGGAGAAGGTTCGAGCAGAGAAAAAGGAAAATAGAAGTGCACGTCTCGAAGGATATAAGGTTGGACCAGAATTTGAGCTGAACAATTGGGAGATCAAGAAGATGTCAAGCATCACTAAAGGATTGCCAAAGAAATTATGTTTGTTATGCACCCTATGGCTATGCCTAAGGCCACAAGGAGTCCTTTGTTAA

Coding sequence (CDS)

ATGATTGCAAAGACAATGATAAGGAGTGGTTATCATATACATGGAGGTTTGGGAAAGCATAATCAAGGAAGTTCAGAAGTGATTTCTCTTCCTAAGGCAAAGGAAAGATTTGGATTGGGGTATAAGCCGACAACTTCTGAATGGGAGAAGGTTCGAGCAGAGAAAAAGGAAAATAGAAGTGCACGTCTCGAAGGATATAAGGTTGGACCAGAATTTGAGCTGAACAATTGGGAGATCAAGAAGATGTCAAGCATCACTAAAGGATTGCCAAAGAAATTATGTTTGTTATGCACCCTATGGCTATGCCTAAGGCCACAAGGAGTCCTTTGTTAA

Protein sequence

MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRSARLEGYKVGPEFELNNWEIKKMSSITKGLPKKLCLLCTLWLCLRPQGVLC

Homology

[Close]

BLAST of Bhi01G000827 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.3e-22
Identity = 68/145 (46.90%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1    MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
            MIAKTMI+SG+ +H GLGK NQG SEVISLPKAKE FGLGYKP TSEWEKVRA+KKE RS
Sbjct: 995  MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKENFGLGYKPVTSEWEKVRAKKKEKRS 1054

Query: 61   ARLEG------------------------------------------------------Y 92
            A L G                                                      +
Sbjct: 1055 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVH 1114

[Close]

BLAST of Bhi01G000827 vs. NCBI nr
Match: TYK00092.1 (protein NYNRIN-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 8.2e-22
Identity = 67/145 (46.21%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 1   MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
           MIAKTMI+SG+ +H GLGK NQG SEVISLPKAKE+FGLGYKP TSEWEKVRA+KKE R+
Sbjct: 1   MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRN 60

Query: 61  ARLEG------------------------------------------------------Y 92
           A L G                                                      +
Sbjct: 61  ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVH 120

[Close]

BLAST of Bhi01G000827 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 67/145 (46.21%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1    MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
            MIAKTMI+SG+ +H GLGK NQG SEVISLPKAKE+FGLGYKP TSEWEKVRA+ KE RS
Sbjct: 964  MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKNKEKRS 1023

Query: 61   ARLEG------------------------------------------------------Y 92
            A L G                                                      +
Sbjct: 1024 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIEVVSENTSLPHPLVH 1083

[Close]

BLAST of Bhi01G000827 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 67/145 (46.21%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1    MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
            MIAKTMI+SG+ +H GLGK NQG SEVISLPKAKE+FGLGYKP TSE EKVRA+KKE RS
Sbjct: 1453 MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSECEKVRAKKKEKRS 1512

Query: 61   ARLEG------------------------------------------------------Y 92
            A L G                                                      +
Sbjct: 1513 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEILIAVVSENTSLPHPLVH 1572

[Close]

BLAST of Bhi01G000827 vs. NCBI nr
Match: KAA0043020.1 (uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-19
Identity = 63/145 (43.45%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 1   MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
           MIAKTMI+S + +H GLGK NQG S+VISLPKAKE+FGLGYKP  SEWEKVRA+KKE RS
Sbjct: 367 MIAKTMIKSCFQMHKGLGKDNQGDSKVISLPKAKEKFGLGYKPAASEWEKVRAKKKEKRS 426

Query: 61  ARLEG------------------------------------------------------Y 92
             L G                                                      +
Sbjct: 427 TLLVGCEMKEERISIPHLFETFKPEELLFDTNQRKRRNEDSEISIAVVSENTSLSHPLVH 486

[Close]

BLAST of Bhi01G000827 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 68/145 (46.90%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1    MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
            MIAKTMI+SG+ +H GLGK NQG SEVISLPKAKE FGLGYKP TSEWEKVRA+KKE RS
Sbjct: 995  MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKENFGLGYKPVTSEWEKVRAKKKEKRS 1054

Query: 61   ARLEG------------------------------------------------------Y 92
            A L G                                                      +
Sbjct: 1055 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVH 1114

[Close]

BLAST of Bhi01G000827 vs. ExPASy TrEMBL
Match: A0A5D3BMZ2 (Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00450 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-22
Identity = 67/145 (46.21%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 1   MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
           MIAKTMI+SG+ +H GLGK NQG SEVISLPKAKE+FGLGYKP TSEWEKVRA+KKE R+
Sbjct: 1   MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRN 60

Query: 61  ARLEG------------------------------------------------------Y 92
           A L G                                                      +
Sbjct: 61  ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVH 120

[Close]

BLAST of Bhi01G000827 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.8e-22
Identity = 67/145 (46.21%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1    MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
            MIAKTMI+SG+ +H GLGK NQG SEVISLPKAKE+FGLGYKP TSEWEKVRA+ KE RS
Sbjct: 964  MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKNKEKRS 1023

Query: 61   ARLEG------------------------------------------------------Y 92
            A L G                                                      +
Sbjct: 1024 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIEVVSENTSLPHPLVH 1083

[Close]

BLAST of Bhi01G000827 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 67/145 (46.21%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 1    MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
            MIAKTMI+SG+ +H GLGK NQG SEVISLPKAKE+FGLGYKP TSE EKVRA+KKE RS
Sbjct: 1453 MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSECEKVRAKKKEKRS 1512

Query: 61   ARLEG------------------------------------------------------Y 92
            A L G                                                      +
Sbjct: 1513 ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEILIAVVSENTSLPHPLVH 1572

[Close]

BLAST of Bhi01G000827 vs. ExPASy TrEMBL
Match: A0A5A7TI68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00990 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 63/145 (43.45%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 1   MIAKTMIRSGYHIHGGLGKHNQGSSEVISLPKAKERFGLGYKPTTSEWEKVRAEKKENRS 60
           MIAKTMI+S + +H GLGK NQG S+VISLPKAKE+FGLGYKP  SEWEKVRA+KKE RS
Sbjct: 367 MIAKTMIKSCFQMHKGLGKDNQGDSKVISLPKAKEKFGLGYKPAASEWEKVRAKKKEKRS 426

Query: 61  ARLEG------------------------------------------------------Y 92
             L G                                                      +
Sbjct: 427 TLLVGCEMKEERISIPHLFETFKPEELLFDTNQRKRRNEDSEISIAVVSENTSLSHPLVH 486

The following BLAST results are available for this feature:

BLAST of Bhi01G000827 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G000827 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G000827 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061241.1	6.3e-22	46.90	uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]	[more]
TYK00092.1	8.2e-22	46.21	protein NYNRIN-like [Cucumis melo var. makuwa]	[more]
KAA0065293.1	1.4e-21	46.21	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
KAA0033221.1	1.2e-20	46.21	uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]	[more]
KAA0043020.1	3.8e-19	43.45	uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]	[more]

BLAST of Bhi01G000827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V681	3.0e-22	46.90	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BMZ2	4.0e-22	46.21	Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G...	[more]
A0A5A7VAU5	6.8e-22	46.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SUT0	5.7e-21	46.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7TI68	1.8e-19	43.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000827	Bhi01M000827	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity