Bhi01G000716 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G000716
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	transcription elongation factor B polypeptide 3
Location	chr1: 18371333 .. 18372013 (+)
RNA-Seq Expression	Bhi01G000716
Synteny	Bhi01G000716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAATGAAGCTATAGATAATTTGAGGTTTCTTAGAGATGTTGGCGACACCGATTTACATGTTCTAAAGCGTATTCTCCCACATTGCACTGTTGATCAATTGTTGCATATAGAGAACTCTTCTAAAGGAAGAGATCTCACACTTGTAACTGACAAGCTGTGGAAAAACTTCTATGTAAAAAAGTTTGGTAAAAATGATTTTGATCTTGCGATTGAGAGGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAGGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG

mRNA sequence

ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAATGAAGCTATAGATAATTTGAGGTTTCTTAGAGATGTTGGCGACACCGATTTACATGTTCTAAAGCGTATTCTCCCACATTGCACTGTTGATCAATTGTTGCATATAGAGAACTCTTCTAAAGGAAGAGATCTCACACTTGTAACTGACAAGCTGTGGAAAAACTTCTATGTAAAAAAGTTTGGTAAAAATGATTTTGATCTTGCGATTGAGAGGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAGGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG

Coding sequence (CDS)

ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAATGAAGCTATAGATAATTTGAGGTTTCTTAGAGATGTTGGCGACACCGATTTACATGTTCTAAAGCGTATTCTCCCACATTGCACTGTTGATCAATTGTTGCATATAGAGAACTCTTCTAAAGGAAGAGATCTCACACTTGTAACTGACAAGCTGTGGAAAAACTTCTATGTAAAAAAGTTTGGTAAAAATGATTTTGATCTTGCGATTGAGAGGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAGGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG

Protein sequence

MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK

Homology

[Close]

BLAST of Bhi01G000716 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-25
Identity = 74/210 (35.24%), Postives = 113/210 (53.81%), Query Frame = 0


Query: 18  INEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFYVK 77
           + +AIDN++++  VG  D  +L++IL HCT++QL HIE+++   DL+ +TDK WK FY K
Sbjct: 18  VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77

Query: 78  KFGKNDFDLAIERMKYKK-ESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSR 137
            +G+ D    IE +++ K   FKW+ LYE K+ A+++K  E+  R K+  + EN RKQSR
Sbjct: 78  HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137

Query: 138 KIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQ 197
           +   C                             K P  +      S+ G    GH   +
Sbjct: 138 QTKVCS----------------------------KAPPSKRPFWGNSASGYNL-GH--VK 196

Query: 198 SKILKKAKREALQCIETKNVIAFRRNAMQK 227
           S I+KKAK + L+  E KN+ A +RN +QK
Sbjct: 198 SNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196

[Close]

BLAST of Bhi01G000716 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-25
Identity = 74/210 (35.24%), Postives = 113/210 (53.81%), Query Frame = 0


Query: 18  INEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFYVK 77
           + +AIDN++++  VG  D  +L++IL HCT++QL HIE+++   DL+ +TDK WK FY K
Sbjct: 18  VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77

Query: 78  KFGKNDFDLAIERMKYKK-ESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSR 137
            +G+ D    IE +++ K   FKW+ LYE K+ A+++K  E+  R K+  + EN RKQSR
Sbjct: 78  HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137

Query: 138 KIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQ 197
           +   C                             K P  +      S+ G    GH   +
Sbjct: 138 QTKVCS----------------------------KAPPSKRPFWGNSASGYNL-GH--VK 196

Query: 198 SKILKKAKREALQCIETKNVIAFRRNAMQK 227
           S I+KKAK + L+  E KN+ A +RN +QK
Sbjct: 198 SNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196

[Close]

BLAST of Bhi01G000716 vs. NCBI nr
Match: XP_038885879.1 (uncharacterized protein LOC120076185 [Benincasa hispida])

HSP 1 Score: 438.3 bits (1126), Expect = 3.9e-119
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG 60
           MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG 60

Query: 61  RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120
           RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA
Sbjct: 61  RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMC 180
           RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMC
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMC 180

Query: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 227
           QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK
Sbjct: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 226

[Close]

BLAST of Bhi01G000716 vs. NCBI nr
Match: XP_038885873.1 (uncharacterized protein LOC120076176 [Benincasa hispida])

HSP 1 Score: 416.0 bits (1068), Expect = 2.1e-112
Identity = 215/226 (95.13%), Postives = 220/226 (97.35%), Query Frame = 0


Query: 1   MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG 60
           MCEEVSKIASSFLSHDSINEAID+LRFL DVGDTDLHVL+RILPHCTVDQL+HIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60

Query: 61  RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120
           RDLT VTDKLWKNFY KKFGKND DL I++MKYKKESFKWKQLYEAKMEALEKKAMEIEA
Sbjct: 61  RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMC 180
           RYKQNCQKENARKQSRKIIFCEDVSSSNNKK RSEGTIKSECNTTESKILKKPNREAQMC
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC 180

Query: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 227
           QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK
Sbjct: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 226

[Close]

BLAST of Bhi01G000716 vs. NCBI nr
Match: XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 2.8e-53
Identity = 119/211 (56.40%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 16  DSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFY 75
           + +N+AID+LRFL DVG TDL+ L+ ILPHCTVDQL+HIEN SKGRDLT +T+KLWK FY
Sbjct: 3   EQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFY 62

Query: 76  VKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
            +KFGK+D +  ++RMK+ KESF+WKQ+YE K++ LE KA+E+E RY +NCQ E ARKQS
Sbjct: 63  ERKFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQS 122

Query: 136 RKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
           R++  CE +S S                   SK+LKKP    ++CQVSS    K  +   
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVHTKVCQVSSANNNKRSYLGG 182

Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
            SKILKKA++E LQ IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of Bhi01G000716 vs. NCBI nr
Match: KAG6582092.1 (hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-51
Identity = 120/209 (57.42%), Postives = 150/209 (71.77%), Query Frame = 0


Query: 18  INEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFYVK 77
           +N+AID+LRFL DVG+TDL+ L+RILPHCTV+QL+ IEN SKGRDLT VT+KLWK FY +
Sbjct: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           KFGK+  +  +E MK+ KESFKWKQ+YE K++ LE+KA+EIE RY QNC+ E ARKQSR+
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQ 124

Query: 138 IIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           +  CE +S S                   SK+LKKP    ++CQVSS    K  +    S
Sbjct: 125 VKICE-ISPS-------------------SKVLKKPKVHTKICQVSSANNNKRSYVGGTS 184

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKA++E LQ IETKN IAFRRNA+QK
Sbjct: 185 KILKKARKETLQSIETKNAIAFRRNAVQK 192

[Close]

BLAST of Bhi01G000716 vs. NCBI nr
Match: KAG6582214.1 (hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.2 bits (539), Expect = 4.5e-51
Identity = 119/211 (56.40%), Postives = 150/211 (71.09%), Query Frame = 0


Query: 16  DSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFY 75
           + +N+AID+LRFL DVG  DL+ L+ ILPHCTVDQL+HIEN SKGRDLT VT+KLWK FY
Sbjct: 3   EQVNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENCSKGRDLTPVTNKLWKTFY 62

Query: 76  VKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
            KKFG++  +  +ERMK+ KESF+WKQ+YE KM+ LE+KA+EIE RY QNC+ E  RKQS
Sbjct: 63  EKKFGEDGVNGVLERMKH-KESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKNRKQS 122

Query: 136 RKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
           R++  CE +S S                   SK+LKKP  + ++CQVSS    K  +   
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVQTKICQVSSATNNKRSYGGG 182

Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
            SKILKKA++E  Q IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETRQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of Bhi01G000716 vs. ExPASy TrEMBL
Match: A0A6J1IR58 (uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.4e-53
Identity = 119/211 (56.40%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 16  DSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFY 75
           + +N+AID+LRFL DVG TDL+ L+ ILPHCTVDQL+HIEN SKGRDLT +T+KLWK FY
Sbjct: 3   EQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFY 62

Query: 76  VKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
            +KFGK+D +  ++RMK+ KESF+WKQ+YE K++ LE KA+E+E RY +NCQ E ARKQS
Sbjct: 63  ERKFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQS 122

Query: 136 RKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
           R++  CE +S S                   SK+LKKP    ++CQVSS    K  +   
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVHTKVCQVSSANNNKRSYLGG 182

Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
            SKILKKA++E LQ IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of Bhi01G000716 vs. ExPASy TrEMBL
Match: A0A6J1ITM2 (uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 120/209 (57.42%), Postives = 147/209 (70.33%), Query Frame = 0


Query: 18  INEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFYVK 77
           +N+AID+LRFL DVG TDL+ L+ ILPHCTV+QL+ IENSSKGRDLT VT+KLWK FY +
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           KFGK+  +  +E MK+ KESFKWKQ+YE K++ LE+KA+EIE RY QNCQ E ARKQSR+
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQSRQ 124

Query: 138 IIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           +  CE +S S                   SK+LKK     + CQVSS    K  +    S
Sbjct: 125 VKICE-ISPS-------------------SKVLKKSKVHTKFCQVSSAHNDKRSYLGGTS 184

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKA++E LQ IETKNVIAFRRN +QK
Sbjct: 185 KILKKARKETLQSIETKNVIAFRRNTVQK 192

[Close]

BLAST of Bhi01G000716 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.6e-41
Identity = 106/209 (50.72%), Postives = 133/209 (63.64%), Query Frame = 0


Query: 18  INEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFYVK 77
           +N+AIDN+RFL DVG+TD+H+L+RILPHCTVDQL+H+E SS+GRDLT VTDKLWK FY +
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 78  KFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           +FGK      IERM+ K+ +F+W QLYEAKM+ +EK   +   R KQ+  KENARKQSR+
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 138 IIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           I  C  V  S+NK  RS G      N   +K                            +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Bhi01G000716 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.6e-41
Identity = 106/209 (50.72%), Postives = 133/209 (63.64%), Query Frame = 0


Query: 18  INEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFYVK 77
           +N+AIDN+RFL DVG+TD+H+L+RILPHCTVDQL+H+E SS+GRDLT VTDKLWK FY +
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 78  KFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           +FGK      IERM+ K+ +F+W QLYEAKM+ +EK   +   R KQ+  KENARKQSR+
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 138 IIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           I  C  V  S+NK  RS G      N   +K                            +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Bhi01G000716 vs. ExPASy TrEMBL
Match: A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.6e-41
Identity = 106/209 (50.72%), Postives = 133/209 (63.64%), Query Frame = 0


Query: 18  INEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKGRDLTLVTDKLWKNFYVK 77
           +N+AIDN+RFL DVG+TD+H+L+RILPHCTVDQL+H+E SS+GRDLT VTDKLWK FY +
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 78  KFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           +FGK      IERM+ K+ +F+W QLYEAKM+ +EK   +   R KQ+  KENARKQSR+
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 138 IIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           I  C  V  S+NK  RS G      N   +K                            +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

The following BLAST results are available for this feature:

BLAST of Bhi01G000716 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	3.5e-25	35.24	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	3.5e-25	35.24	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

BLAST of Bhi01G000716 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi01G000716 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885879.1	3.9e-119	100.00	uncharacterized protein LOC120076185 [Benincasa hispida]	[more]
XP_038885873.1	2.1e-112	95.13	uncharacterized protein LOC120076176 [Benincasa hispida]	[more]
XP_022979571.1	2.8e-53	56.40	uncharacterized protein LOC111479252 [Cucurbita maxima]	[more]
KAG6582092.1	2.0e-51	57.42	hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6582214.1	4.5e-51	56.40	hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Bhi01G000716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IR58	1.4e-53	56.40	uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252...	[more]
A0A6J1ITM2	1.1e-50	57.42	uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243...	[more]
A0A5D3BGR1	4.6e-41	50.72	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	4.6e-41	50.72	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A1S3C4D6	4.6e-41	50.72	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..128
None	No IPR available	GENE3D	6.10.250.3180		coord: 24..130 e-value: 8.3E-21 score: 76.0
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 17..225
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 29..138 e-value: 5.4E-23 score: 81.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000716	Bhi01M000716	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus