Bhi01G000410 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G000410
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	CCHC-type domain-containing protein
Location	chr1: 9948783 .. 9949094 (+)
RNA-Seq Expression	Bhi01G000410
Synteny	Bhi01G000410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATTCGTGTAGCAACAGATATCTCAAAACCTCTTAAGCGTGAAATTAAAATTAAATCAACCTCTCATCCAGAGGGCCAATGGTTCAACATTCGCTATGACAGACTCCCATATTTGTGTTTCATGTGTGGTCACATTAGCCATTTAATCAAGACCTGGCAAGATAGATCAAAAGAAAAGGATAAAGAATTACTTCAATATGGTCCTCGATTGAAATATCAAGGACCTACCCAATTCAAGAAGAAGACTCCACCACCATCGTATGAAAAAAAAATGAGGAAAAAACCACAGGGACCTCCCAAAAAATAA

mRNA sequence

ATGAGGATTCGTGTAGCAACAGATATCTCAAAACCTCTTAAGCGTGAAATTAAAATTAAATCAACCTCTCATCCAGAGGGCCAATGGTTCAACATTCGCTATGACAGACTCCCATATTTGTGTTTCATGTGTGGTCACATTAGCCATTTAATCAAGACCTGGCAAGATAGATCAAAAGAAAAGGATAAAGAATTACTTCAATATGGTCCTCGATTGAAATATCAAGGACCTACCCAATTCAAGAAGAAGACTCCACCACCATCGTATGAAAAAAAAATGAGGAAAAAACCACAGGGACCTCCCAAAAAATAA

Coding sequence (CDS)

ATGAGGATTCGTGTAGCAACAGATATCTCAAAACCTCTTAAGCGTGAAATTAAAATTAAATCAACCTCTCATCCAGAGGGCCAATGGTTCAACATTCGCTATGACAGACTCCCATATTTGTGTTTCATGTGTGGTCACATTAGCCATTTAATCAAGACCTGGCAAGATAGATCAAAAGAAAAGGATAAAGAATTACTTCAATATGGTCCTCGATTGAAATATCAAGGACCTACCCAATTCAAGAAGAAGACTCCACCACCATCGTATGAAAAAAAAATGAGGAAAAAACCACAGGGACCTCCCAAAAAATAA

Protein sequence

MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKEKDKELLQYGPRLKYQGPTQFKKKTPPPSYEKKMRKKPQGPPKK

Homology

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: KAG4924985.1 (hypothetical protein JHK87_050525 [Glycine soja])

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-08
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 3   IRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDR---SK 62
           IRV+ D+SKPL+R IK+K  +  E +   ++Y+RL  +CF+CGH++HL+K   D+     
Sbjct: 47  IRVSIDVSKPLRRGIKMKMEAR-EPKGLMVKYERLYNICFVCGHLNHLLKECMDKLSDIS 106

Query: 63  EKDKELLQYGPRLK 74
           E+D+E L +GP LK
Sbjct: 107 EEDEESLPFGPLLK 119

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           +R+RV  D+ KPL R IK+       G W  I+Y+RLP   + CG + H++K   D   +
Sbjct: 172 LRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVD 231

Query: 61  KDKELLQYGPRLKYQG 77
              + LQYGP L++QG
Sbjct: 232 SVSKNLQYGPWLRFQG 247

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: TXG53668.1 (hypothetical protein EZV62_018924 [Acer yangbiense])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           +R++V  DI KPLKR +++K           ++Y+RLP  CF CG I H+IK   D   +
Sbjct: 71  IRVKVQLDILKPLKRWLRLKLDKSKNIVVVGLKYERLPDFCFACGRIGHVIKECTDEEAK 130

Query: 61  K---DKELLQYGPRLKYQGPTQFK 82
           K   +  + ++GP LK  GP + K
Sbjct: 131 KGVLEGSITKFGPWLKASGPEKLK 154

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: CAD6272032.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           +R +VA D+SKPL+R + I S      +W++++Y++LP+ CF CG I H        +  
Sbjct: 416 LRAKVAIDVSKPLRRCVGIFSARRQTNEWYDVQYEKLPHFCFSCGIIGHSSIECPSPAAR 475

Query: 61  KDKELLQYGPRLKYQGPTQFKKK 84
            +K LL YG  L+   P   KKK
Sbjct: 476 DNKGLLPYGENLRV--PDDKKKK 496

[Close]

BLAST of Bhi01G000410 vs. NCBI nr
Match: XP_012701525.1 (uncharacterized protein LOC101785285 [Setaria italica] >XP_012702360.1 uncharacterized protein LOC101786648 [Setaria italica])

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-06
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           +R RVA  I KP++R I+++   + E +WF I+Y+RLPY+CF CG + H     +  ++ 
Sbjct: 186 LRARVAIQIDKPVRRGIRLRVNKNEEPRWFQIQYERLPYICFHCGFMGHSDLECETPAER 245

Query: 61  KDKELLQYGPRLKYQGPTQFKKK 84
            +   L Y   L+   P + KKK
Sbjct: 246 GEDGKLPYDVNLR--APEEKKKK 266

[Close]

BLAST of Bhi01G000410 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           +R+RV  D+ KPL R IK+       G W  I+Y+RLP   + CG + H++K   D   +
Sbjct: 172 LRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVD 231

Query: 61  KDKELLQYGPRLKYQG 77
              + LQYGP L++QG
Sbjct: 232 SVSKNLQYGPWLRFQG 247

[Close]

BLAST of Bhi01G000410 vs. ExPASy TrEMBL
Match: A0A803MZD7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           MRI+V   ++KPL+R ++I  T +   +W +I+Y+RL   CF CG + H+ K + D   E
Sbjct: 59  MRIKVILALNKPLRRGVEIAMTFN-SVKWIDIKYERLGEFCFFCGKLGHIDKEFHDHELE 118

Query: 61  KDKELL-QYGPRLK 74
           +D++++ QYGP L+
Sbjct: 119 QDEKIVNQYGPYLR 131

[Close]

BLAST of Bhi01G000410 vs. ExPASy TrEMBL
Match: A0A5C7H9K6 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018924 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.5e-07
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           +R++V  DI KPLKR +++K           ++Y+RLP  CF CG I H+IK   D   +
Sbjct: 71  IRVKVQLDILKPLKRWLRLKLDKSKNIVVVGLKYERLPDFCFACGRIGHVIKECTDEEAK 130

Query: 61  K---DKELLQYGPRLKYQGPTQFK 82
           K   +  + ++GP LK  GP + K
Sbjct: 131 KGVLEGSITKFGPWLKASGPEKLK 154

[Close]

BLAST of Bhi01G000410 vs. ExPASy TrEMBL
Match: A0A5C7IND1 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004987 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQDRSKE 60
           +R++V  DISKPLKR +++K     E     ++Y+RLP  CF CG I H+IK   D   +
Sbjct: 203 IRVKVQIDISKPLKRWLRLKLGKADEIVVVGLKYERLPDFCFACGRIGHIIKECVDEEAK 262

Query: 61  K---DKELLQYGPRLKYQG 77
           K   +   L++G  LK QG
Sbjct: 263 KGALEGSPLRFGQWLKAQG 281

[Close]

BLAST of Bhi01G000410 vs. ExPASy TrEMBL
Match: A0A5C7IBI6 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_007852 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 1   MRIRVATDISKPLKREIKIKSTSHPEGQWFNIRYDRLPYLCFMCGHISHLIKTWQD---R 60
           MR++V  DISK LKR IK+K     E    N++Y+RLP  CF CG I H IK  QD   R
Sbjct: 89  MRVKVRIDISKALKRWIKLKLGKSEEVTTMNLKYERLPEFCFACGKIGHGIKECQDVDAR 148

Query: 61  SKEKDKELLQYGPRLKYQGPTQFKKKT 85
           +   +    ++G  LK   P + K ++
Sbjct: 149 NTALEGSQNKFGSWLKASIPNRLKPRS 175

The following BLAST results are available for this feature:

BLAST of Bhi01G000410 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G000410 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4924985.1	3.7e-08	44.59	hypothetical protein JHK87_050525 [Glycine soja]	[more]
XP_022132681.1	2.4e-07	39.47	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
TXG53668.1	1.6e-06	36.90	hypothetical protein EZV62_018924 [Acer yangbiense]	[more]
CAD6272032.1	1.6e-06	37.35	unnamed protein product [Miscanthus lutarioriparius]	[more]
XP_012701525.1	2.7e-06	36.14	uncharacterized protein LOC101785285 [Setaria italica] >XP_012702360.1 uncharact...	[more]

BLAST of Bhi01G000410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSZ1	1.2e-07	39.47	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A803MZD7	5.8e-07	39.19	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A5C7H9K6	7.5e-07	36.90	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01892...	[more]
A0A5C7IND1	2.2e-06	40.51	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00498...	[more]
A0A5C7IBI6	2.2e-06	40.23	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00785...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 8..50 e-value: 2.2E-9 score: 36.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000410	Bhi01M000410	mRNA