Bhi01G000384 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G000384
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DNA-directed RNA polymerase II subunit 1-like
Location	chr1: 9345496 .. 9345928 (+)
RNA-Seq Expression	Bhi01G000384
Synteny	Bhi01G000384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAATCCGGAATCAAGCCGGAGGTGGAGCAGAAAACCGGCCCGTACAAGAAGCCGGATCGGCAGACAGAATACGGATCCGGTAAGCCGCCGGTGAACCTACAGGCGGAGGCTATAAACCTCACCGGACATAACGTAGGCGTGGTAATGGAAAATAACGAATTATCCAATAAAACGATCAGGCGGAGAAGTCATTAGGAAGATCGAAACAGAAACCGGCGTCCGGCAAGAAAATGACGAGGAGAAAAGTCGCGGAGCAACCGGATTTCCGATGACGCCAATCCTGAACAGCAATTTCCAAGAAGTGAACAATTCAGTTCTGTGTAATTCGTCTTGCGGTGGGCGTGATCCGGGGCTGCATCTTGATTTCTCCGGCAAGTCAAAGGATGATGCAGCCACTGTGGACGGCGGCGAGAAATCTAAATATTAA

mRNA sequence

ATGATTCAATCCGGAATCAAGCCGGAGGTGGAGCAGAAAACCGGCCCGTACAAGAAGCCGGATCGGCAGACAGAATACGGATCCGGTAAGCCGCCGGTGAACCTACAGGCGGAGGCTATAAACCTCACCGGACATAACGTAGGCGTGGTAATGGAAAATAACGAATTATCCAATAAAACGATCAGGCGGAGAAAAACCGGCGTCCGGCAAGAAAATGACGAGGAGAAAAGTCGCGGAGCAACCGGATTTCCGATGACGCCAATCCTGAACAGCAATTTCCAAGAAGTGAACAATTCAGTTCTGTGTAATTCGTCTTGCGGTGGGCGTGATCCGGGGCTGCATCTTGATTTCTCCGGCAAGTCAAAGGATGATGCAGCCACTGTGGACGGCGGCGAGAAATCTAAATATTAA

Coding sequence (CDS)

ATGATTCAATCCGGAATCAAGCCGGAGGTGGAGCAGAAAACCGGCCCGTACAAGAAGCCGGATCGGCAGACAGAATACGGATCCGGTAAGCCGCCGGTGAACCTACAGGCGGAGGCTATAAACCTCACCGGACATAACGTAGGCGTGGTAATGGAAAATAACGAATTATCCAATAAAACGATCAGGCGGAGAAAAACCGGCGTCCGGCAAGAAAATGACGAGGAGAAAAGTCGCGGAGCAACCGGATTTCCGATGACGCCAATCCTGAACAGCAATTTCCAAGAAGTGAACAATTCAGTTCTGTGTAATTCGTCTTGCGGTGGGCGTGATCCGGGGCTGCATCTTGATTTCTCCGGCAAGTCAAAGGATGATGCAGCCACTGTGGACGGCGGCGAGAAATCTAAATATTAA

Protein sequence

MIQSGIKPEVEQKTGPYKKPDRQTEYGSGKPPVNLQAEAINLTGHNVGVVMENNELSNKTIRRRKTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLHLDFSGKSKDDAATVDGGEKSKY

Homology

[Close]

BLAST of Bhi01G000384 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 24/80 (30.00%), Postives = 38/80 (47.50%), Query Frame = 0


Query: 45  HNVGVVMENNELSNKTIRRRKTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNS 104
           H  G      + S+ +      G ++      ++G +  PM   +NSN Q +NNS++ NS
Sbjct: 299 HGTGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKGNSNLPMKAFMNSNVQMINNSIVYNS 358

Query: 105 SCGGRDPGLHLDFSGKSKDD 125
           +    DPG+HL  S K   D
Sbjct: 359 TASHHDPGVHLKISRKPGSD 378

[Close]

BLAST of Bhi01G000384 vs. TAIR 10
Match: AT1G63310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 40  INLTGHNVGVVMENNELSNKTIRRRKTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNS 99
           I L+G N+G  M+  EL N        G R +N + +      F ++  +NSNFQ VNNS
Sbjct: 53  ITLSGSNLGATMK-TELDN------NHGDRDQNGDHE----LDF-LSTYVNSNFQAVNNS 112

Query: 100 VLCNSSCGGRDPGLHLDFSG 120
           ++  +     DPG+HLD SG
Sbjct: 113 IMIGAKYETHDPGVHLDISG 120

[Close]

BLAST of Bhi01G000384 vs. NCBI nr
Match: XP_011650663.1 (gibberellin-regulated protein 14 [Cucumis sativus] >KGN56396.1 hypothetical protein Csa_011358 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 4.1e-39
Identity = 94/142 (66.20%), Postives = 110/142 (77.46%), Query Frame = 0


Query: 2   IQSGIKPEVEQKTGPYKKPDRQTEYGSGKPPVNLQAEAINLTGHNVGVVMENNELSNK-- 61
           + S IKPEVEQKT  +KK DRQ +  S KPP +LQA+AINLTG N+G VM+ N+ S+K  
Sbjct: 141 VPSAIKPEVEQKTDSFKKSDRQVDNVSAKPPPSLQAKAINLTGDNIGAVMKINQFSDKIS 200

Query: 62  --TIRRR---KTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLH 121
              + R+   KTGV+QEND EKSR  T FPMTPI NSNFQEVNNSV+ NSSC GRDPGLH
Sbjct: 201 GGEVTRKIETKTGVQQENDMEKSRRETEFPMTPITNSNFQEVNNSVMYNSSCSGRDPGLH 260

Query: 122 LDFSGKSKDDAATVDGGEKSKY 137
           LDFSG+ KD+AATVDG +KSKY
Sbjct: 261 LDFSGQ-KDEAATVDGNKKSKY 281

[Close]

BLAST of Bhi01G000384 vs. NCBI nr
Match: KAA0048864.1 (WW domain-binding protein 11-like [Cucumis melo var. makuwa] >TYK20816.1 WW domain-binding protein 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 2   IQSGIKPEVEQKTGPYKKPDRQTEYGSGKPPVNLQAEAINLTGHNVGVVMENNELSNKT- 61
           I S IKPEVEQKTGP KK D Q EY SG PP +LQA+AINL G N+G VM+ N+ S+K+ 
Sbjct: 145 IPSAIKPEVEQKTGPLKKSDPQVEYVSGMPPPSLQAKAINLAGDNIGAVMKINQFSDKSS 204

Query: 62  ---IRRR---KTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLH 121
              + R+   +TGV+QENDEEKSR  T FPMTPI NSNFQEVNNSV+ NSSC  RDPGLH
Sbjct: 205 GGEVTRKIETETGVQQENDEEKSRRETEFPMTPITNSNFQEVNNSVVYNSSCNSRDPGLH 264

Query: 122 LDFSGKSKDDAATVD 130
           LDFSGK KD+AATV+
Sbjct: 265 LDFSGK-KDEAATVE 278

[Close]

BLAST of Bhi01G000384 vs. NCBI nr
Match: XP_008437853.1 (PREDICTED: WW domain-binding protein 11-like [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 2   IQSGIKPEVEQKTGPYKKPDRQTEYGSGKPPVNLQAEAINLTGHNVGVVMENNELSNKT- 61
           I S IKPEVEQKTGP KK D Q EY SG PP +LQA+AINL G N+G VM+ N+ S+K+ 
Sbjct: 139 IPSAIKPEVEQKTGPLKKSDPQVEYVSGMPPPSLQAKAINLAGDNIGAVMKINQFSDKSS 198

Query: 62  ---IRRR---KTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLH 121
              + R+   +TGV+QENDEEKSR  T FPMTPI NSNFQEVNNSV+ NSSC  RDPGLH
Sbjct: 199 GGEVTRKIETETGVQQENDEEKSRRETEFPMTPITNSNFQEVNNSVVYNSSCNSRDPGLH 258

Query: 122 LDFSGKSKDDAATVD 130
           LDFSGK KD+AATV+
Sbjct: 259 LDFSGK-KDEAATVE 272

[Close]

BLAST of Bhi01G000384 vs. NCBI nr
Match: XP_022147499.1 (uncharacterized protein LOC111016407 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 4.1e-23
Identity = 70/140 (50.00%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 18  KKPDRQTEYGSG-------KPPVNLQAEAINLTGHNVGVVMENNELSNKTIR-------- 77
           K+P R+    +G       KPP   QAEAINLTGHNVG VME  + S    R        
Sbjct: 21  KRPSRRRRSRTGRRSTDPEKPPQKQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEIAKK 80

Query: 78  -RRKTGVRQENDEEKSRG-------ATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLH 135
              + GVR  ND+E+ +G         GFP T  +NSNFQEVNNSV+ +S+C GRDPGLH
Sbjct: 81  NETEGGVRHGNDDERKKGRKDKSDRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLH 140

[Close]

BLAST of Bhi01G000384 vs. NCBI nr
Match: KAG6597060.1 (hypothetical protein SDJN03_10240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-20
Identity = 71/147 (48.30%), Postives = 86/147 (58.50%), Query Frame = 0


Query: 3   QSGIKPEVEQKTGPYK-------KPDRQTEYGSGKPPVNLQ-AEAINLTGHNVGVVME-- 62
           Q  I+PEVE+K+  Y        K D  +EYGSGKP    +  EAINL GHNVG VME  
Sbjct: 137 QPKIQPEVEKKSFVYNKTVEKPAKSDWTSEYGSGKPHEKQKVTEAINLAGHNVGAVMEID 196

Query: 63  ----NNELSNKTIRRRKTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGG 122
                + L  +T+R    GVR  N+E+K +     PMT  +NSNFQ VNNSVL  SSC  
Sbjct: 197 KSTVGHRLGGETVR---GGVRDGNEEKKKKEKKEVPMTAFMNSNFQSVNNSVLYGSSCNH 256

Query: 123 RDPGLHLDFSGKSKDDAATVDGGEKSK 136
           RDPGLHL F+  +  D ATVDG +  K
Sbjct: 257 RDPGLHLKFADAADGDGATVDGRKNYK 280

[Close]

BLAST of Bhi01G000384 vs. ExPASy TrEMBL
Match: A0A0A0L8G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119310 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.0e-39
Identity = 94/142 (66.20%), Postives = 110/142 (77.46%), Query Frame = 0


Query: 2   IQSGIKPEVEQKTGPYKKPDRQTEYGSGKPPVNLQAEAINLTGHNVGVVMENNELSNK-- 61
           + S IKPEVEQKT  +KK DRQ +  S KPP +LQA+AINLTG N+G VM+ N+ S+K  
Sbjct: 141 VPSAIKPEVEQKTDSFKKSDRQVDNVSAKPPPSLQAKAINLTGDNIGAVMKINQFSDKIS 200

Query: 62  --TIRRR---KTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLH 121
              + R+   KTGV+QEND EKSR  T FPMTPI NSNFQEVNNSV+ NSSC GRDPGLH
Sbjct: 201 GGEVTRKIETKTGVQQENDMEKSRRETEFPMTPITNSNFQEVNNSVMYNSSCSGRDPGLH 260

Query: 122 LDFSGKSKDDAATVDGGEKSKY 137
           LDFSG+ KD+AATVDG +KSKY
Sbjct: 261 LDFSGQ-KDEAATVDGNKKSKY 281

[Close]

BLAST of Bhi01G000384 vs. ExPASy TrEMBL
Match: A0A5D3DB96 (WW domain-binding protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00770 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 2   IQSGIKPEVEQKTGPYKKPDRQTEYGSGKPPVNLQAEAINLTGHNVGVVMENNELSNKT- 61
           I S IKPEVEQKTGP KK D Q EY SG PP +LQA+AINL G N+G VM+ N+ S+K+ 
Sbjct: 145 IPSAIKPEVEQKTGPLKKSDPQVEYVSGMPPPSLQAKAINLAGDNIGAVMKINQFSDKSS 204

Query: 62  ---IRRR---KTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLH 121
              + R+   +TGV+QENDEEKSR  T FPMTPI NSNFQEVNNSV+ NSSC  RDPGLH
Sbjct: 205 GGEVTRKIETETGVQQENDEEKSRRETEFPMTPITNSNFQEVNNSVVYNSSCNSRDPGLH 264

Query: 122 LDFSGKSKDDAATVD 130
           LDFSGK KD+AATV+
Sbjct: 265 LDFSGK-KDEAATVE 278

[Close]

BLAST of Bhi01G000384 vs. ExPASy TrEMBL
Match: A0A1S3AVL7 (WW domain-binding protein 11-like OS=Cucumis melo OX=3656 GN=LOC103483160 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 2   IQSGIKPEVEQKTGPYKKPDRQTEYGSGKPPVNLQAEAINLTGHNVGVVMENNELSNKT- 61
           I S IKPEVEQKTGP KK D Q EY SG PP +LQA+AINL G N+G VM+ N+ S+K+ 
Sbjct: 139 IPSAIKPEVEQKTGPLKKSDPQVEYVSGMPPPSLQAKAINLAGDNIGAVMKINQFSDKSS 198

Query: 62  ---IRRR---KTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLH 121
              + R+   +TGV+QENDEEKSR  T FPMTPI NSNFQEVNNSV+ NSSC  RDPGLH
Sbjct: 199 GGEVTRKIETETGVQQENDEEKSRRETEFPMTPITNSNFQEVNNSVVYNSSCNSRDPGLH 258

Query: 122 LDFSGKSKDDAATVD 130
           LDFSGK KD+AATV+
Sbjct: 259 LDFSGK-KDEAATVE 272

[Close]

BLAST of Bhi01G000384 vs. ExPASy TrEMBL
Match: A0A6J1D170 (uncharacterized protein LOC111016407 OS=Momordica charantia OX=3673 GN=LOC111016407 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 70/140 (50.00%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 18  KKPDRQTEYGSG-------KPPVNLQAEAINLTGHNVGVVMENNELSNKTIR-------- 77
           K+P R+    +G       KPP   QAEAINLTGHNVG VME  + S    R        
Sbjct: 21  KRPSRRRRSRTGRRSTDPEKPPQKQQAEAINLTGHNVGAVMEVRQFSESDDRSGGEIAKK 80

Query: 78  -RRKTGVRQENDEEKSRG-------ATGFPMTPILNSNFQEVNNSVLCNSSCGGRDPGLH 135
              + GVR  ND+E+ +G         GFP T  +NSNFQEVNNSV+ +S+C GRDPGLH
Sbjct: 81  NETEGGVRHGNDDERKKGRKDKSDRVKGFPRTAFMNSNFQEVNNSVMYDSTCRGRDPGLH 140

[Close]

BLAST of Bhi01G000384 vs. ExPASy TrEMBL
Match: A0A6J1GDX3 (wiskott-Aldrich syndrome protein family member 2-like OS=Cucurbita moschata OX=3662 GN=LOC111453294 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 70/147 (47.62%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 3   QSGIKPEVEQKTGPYKKP-------DRQTEYGSGKPPVNLQ-AEAINLTGHNVGVVME-- 62
           Q  I+PE+EQK+  Y K        DR +EYGSGKP    + AEAINL GHNVG VME  
Sbjct: 129 QPKIQPEIEQKSIVYNKTVEKPAKFDRASEYGSGKPHEKQKAAEAINLAGHNVGAVMEID 188

Query: 63  ----NNELSNKTIRRRKTGVRQENDEEKSRGATGFPMTPILNSNFQEVNNSVLCNSSCGG 122
                + L  +T+R     VR  N+E+K +     PMT   NSNFQ VNNSVL  SSC  
Sbjct: 189 KSSVGHRLGGETVR---GSVRDGNEEKKKKEKKELPMTAFTNSNFQSVNNSVLYGSSCNH 248

Query: 123 RDPGLHLDFSGKSKDDAATVDGGEKSK 136
           RDPGLHL F+  +  D A  DG +  K
Sbjct: 249 RDPGLHLKFADAADGDGAAADGRKNYK 272

The following BLAST results are available for this feature:

BLAST of Bhi01G000384 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46630.1	1.6e-04	30.00	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP...	[more]
AT1G63310.1	2.0e-04	37.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

BLAST of Bhi01G000384 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi01G000384 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650663.1	4.1e-39	66.20	gibberellin-regulated protein 14 [Cucumis sativus] >KGN56396.1 hypothetical prot...	[more]
KAA0048864.1	2.9e-37	67.41	WW domain-binding protein 11-like [Cucumis melo var. makuwa] >TYK20816.1 WW doma...	[more]
XP_008437853.1	2.9e-37	67.41	PREDICTED: WW domain-binding protein 11-like [Cucumis melo]	[more]
XP_022147499.1	4.1e-23	50.00	uncharacterized protein LOC111016407 [Momordica charantia]	[more]
KAG6597060.1	1.1e-20	48.30	hypothetical protein SDJN03_10240, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Bhi01G000384 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8G8	2.0e-39	66.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119310 PE=4 SV=1	[more]
A0A5D3DB96	1.4e-37	67.41	WW domain-binding protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3AVL7	1.4e-37	67.41	WW domain-binding protein 11-like OS=Cucumis melo OX=3656 GN=LOC103483160 PE=4 S...	[more]
A0A6J1D170	2.0e-23	50.00	uncharacterized protein LOC111016407 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1GDX3	1.2e-20	47.62	wiskott-Aldrich syndrome protein family member 2-like OS=Cucurbita moschata OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..136
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 11..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000384	Bhi01M000384	mRNA