Cla003872 (gene) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGGTAATCATCTTATTTAGAAGCCTCTGTTTCGCGATTCCCATTCAGGATTTCATTTCACTCTAGTTTTCCTTTGATTATGGTCTCACCAGCAACCTAGTTTATTTTGATTTTTAAGTGAAATTTTCGGCAGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTAGTTCTTTTCACCTTATATCTTCCTTCACTGTTTTCGTTGACTACTTTTCAATAACCAGTCTCACCTCTCCATAACATATGCTGACTTTTGAGATGGATTCCTTTGCTCTATTCACCGTTCATCATCTGTGCTCTCAACTTTGACATTCTATCCCTATCCAATTTGGTGGCCTTTCTGCTGTTATTTTATCGAATAACCTTACTCTTTTTTCTATTATTTGTTGCCAAGCTATGTCAAATCATTACTTGTTAGTCTAATCACTATGTCGGGTCAACAAAACACACAACAAAGAGGTATGTCGATAAGTCGATTACTTATTTATTTTCTTTTTTTTGGTTTTCTTGATGGTAGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGGTAAACTATGTCATGATTGATCATTATGATTGAATTTAGATATATCTTTTGTGATATATATTGAGAATGACTGTATTTTGTTCTGCCATGTGATTATTCTTGCAGTTCCTTTCTTGA ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGTTCCTTTCTTGA ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGTTCCTTTCTTGA MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKFLS
BLAST of Cla003872 vs. Swiss-Prot
Match: BH080_ARATH (Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=2 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 6.8e-54 Identity = 123/227 (54.19%), Postives = 153/227 (67.40%), Query Frame = 1
BLAST of Cla003872 vs. Swiss-Prot
Match: BH081_ARATH (Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 7.6e-53 Identity = 121/225 (53.78%), Postives = 148/225 (65.78%), Query Frame = 1
BLAST of Cla003872 vs. Swiss-Prot
Match: BH130_ARATH (Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.1e-19 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
HSP 2 Score: 32.7 bits (73), Expect = 5.7e+00 Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 1
BLAST of Cla003872 vs. Swiss-Prot
Match: BH122_ARATH (Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17 Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 1
BLAST of Cla003872 vs. Swiss-Prot
Match: BH128_ARATH (Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 2.3e-17 Identity = 76/209 (36.36%), Postives = 97/209 (46.41%), Query Frame = 1
HSP 2 Score: 31.2 bits (69), Expect = 1.7e+01 Identity = 15/39 (38.46%), Postives = 25/39 (64.10%), Query Frame = 1
BLAST of Cla003872 vs. TrEMBL
Match: A0A0A0KY01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652220 PE=4 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 7.5e-92 Identity = 177/206 (85.92%), Postives = 185/206 (89.81%), Query Frame = 1
BLAST of Cla003872 vs. TrEMBL
Match: A0A061FK96_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58 Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1
BLAST of Cla003872 vs. TrEMBL
Match: A0A061FKW9_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58 Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1
BLAST of Cla003872 vs. TrEMBL
Match: A0A061FJR8_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58 Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1
BLAST of Cla003872 vs. TrEMBL
Match: A0A061FS23_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58 Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1
BLAST of Cla003872 vs. NCBI nr
Match: gi|449447621|ref|XP_004141566.1| (PREDICTED: transcription factor bHLH81 isoform X1 [Cucumis sativus]) HSP 1 Score: 344.7 bits (883), Expect = 1.1e-91 Identity = 177/206 (85.92%), Postives = 185/206 (89.81%), Query Frame = 1
BLAST of Cla003872 vs. NCBI nr
Match: gi|659119475|ref|XP_008459678.1| (PREDICTED: transcription factor bHLH80 isoform X1 [Cucumis melo]) HSP 1 Score: 344.7 bits (883), Expect = 1.1e-91 Identity = 181/206 (87.86%), Postives = 185/206 (89.81%), Query Frame = 1
BLAST of Cla003872 vs. NCBI nr
Match: gi|778708105|ref|XP_011656122.1| (PREDICTED: transcription factor bHLH81 isoform X2 [Cucumis sativus]) HSP 1 Score: 306.6 bits (784), Expect = 3.3e-80 Identity = 160/206 (77.67%), Postives = 173/206 (83.98%), Query Frame = 1
BLAST of Cla003872 vs. NCBI nr
Match: gi|659119477|ref|XP_008459679.1| (PREDICTED: transcription factor bHLH80 isoform X2 [Cucumis melo]) HSP 1 Score: 306.6 bits (784), Expect = 3.3e-80 Identity = 164/206 (79.61%), Postives = 173/206 (83.98%), Query Frame = 1
BLAST of Cla003872 vs. NCBI nr
Match: gi|590603802|ref|XP_007020098.1| (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 [Theobroma cacao]) HSP 1 Score: 234.2 bits (596), Expect = 2.1e-58 Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |