CmoCh09G013280 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh09G013280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(BHLH transcription factor) (DNA binding protein)
LocationCmo_Chr09 : 12035286 .. 12036811 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGATTGGCTTCCACTGTGGAAAAGAGCCGAGAGGAGGAACAATCTGGTCCCTGTGAGTGACCCTTTCCAAAGATAGAATTTCTTCACCAAAAGCAGCGGCGGTGTTTTCCTTTTCTTCTCTCTTCCAGAAATAACGAAAAACAACAAAATTCAGCAGAAATCTCCTGAGCCAGTCACTGTGAAGCAGATGCAATCCACAACTGGTGGTGCTACTGGCAGTCGTAGCGGCGGCGGCGGTAGCGGCGGCGGACTTGCTCGCTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCTACTCAGGCCTAATCAGTGCTTGACTCAGCTTCTCGCTGGCAACTCCTCCGACCTAGACTCCCCCGCGGATCAGGCCTTGTTCGAGCCCAATCCCTCCGCTGGTTTCCAGAGGCAAAATAGCTCTCCGGCTGAGTTTCTCGGCGCCTCCGGAATCGGGGAAGGATTTTACTCTTCCTATGCTATCAATTCCTCGGCCGCTCTCGAGATCTCTCCCACTTCCAAGCGGGGGAGAGAAGTCGACGCGCAGAACTTCCCGCCCAAATTTTCACCGCAACTGGTAATCATTTTATTTCGAACCTCTGTTTCGCGATTCCCTGTTTGGAGGATTTGAAACGATTTTGATTTCGGATTACTTTTCTCTTGATTATGGTCTCCCGATTTTGAAATTGTTTAAGTGAAAATTTTGGCAGAAAAGGGAAGGAAGTGGAGTATCGAGTTTGATAGACATGGAAATGGAGAAGCTATTGGAGGACTCCGTGCCCTGCCGTGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTAGTTCCTTTTCGCCTAAATCTTCGTTGACTAATTGCTTCTTTCAACTTCCACTTTTCAATACCCAATCTCACTTGTTCATAACTTCTGTGACATTCTTCACTGTAATAATTCCACATGGATTCCTTGCCTCTTCTGATCATTCATCATCTCAGCTCTGCCTTTATGTCTATTTGAAACTTACATTTAAAATGTTTTCTATCACACTCTTGTAAACAATGATTCGTTTTCCTTCCCAACCGACGTAGGATCTCACAATCCACCCACCTATCACTCGTTCCCTTCTCCAATCGATGTAGGACCCTCCAATCCACCCCTATGAGGCCAGCATCTTTGCTGGCACATTGTCTCGTGTCCACTCCCTCTTGGAGCTCAGTCTCCCTGCTGACACATCGCTCAGTGTCTAGCTTTGATACCATCTGTAACGGCTCAAGCCCACCCTAGTAGATATTGTCTTTTCCTTTCTTTGTTGGCCTTTCTTTGTGTTAAAACTATTTACTCATTAGACTAAGCAGTATGTCTTGTGAAAAAGGTATGTTGATTACTTATGTTTTGTTTTCTTGATGGTAGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGGTAAATTATATCATGATTGATCATTAG

mRNA sequence

ATGAGGGATTGGCTTCCACTGTGGAAAAGAGCCGAGAGGAGGAACAATCTGGTCCCTAAATCTCCTGAGCCAGTCACTGTGAAGCAGATGCAATCCACAACTGGTGGTGCTACTGGCAGTCGTAGCGGCGGCGGCGGTAGCGGCGGCGGACTTGCTCGCTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCTACTCAGGCCTAATCAGTGCTTGACTCAGCTTCTCGCTGGCAACTCCTCCGACCTAGACTCCCCCGCGGATCAGGCCTTGTTCGAGCCCAATCCCTCCGCTGGTTTCCAGAGGCAAAATAGCTCTCCGGCTGAGTTTCTCGGCGCCTCCGGAATCGGGGAAGGATTTTACTCTTCCTATGCTATCAATTCCTCGGCCGCTCTCGAGATCTCTCCCACTTCCAAGCGGGGGAGAGAAGTCGACGCGCAGAACTTCCCGCCCAAATTTTCACCGCAACTGAAAAGGGAAGGAAGTGGAGTATCGAGTTTGATAGACATGGAAATGGAGAAGCTATTGGAGGACTCCGTGCCCTGCCGTGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGGTAAATTATATCATGATTGATCATTAG

Coding sequence (CDS)

ATGAGGGATTGGCTTCCACTGTGGAAAAGAGCCGAGAGGAGGAACAATCTGGTCCCTAAATCTCCTGAGCCAGTCACTGTGAAGCAGATGCAATCCACAACTGGTGGTGCTACTGGCAGTCGTAGCGGCGGCGGCGGTAGCGGCGGCGGACTTGCTCGCTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCTACTCAGGCCTAATCAGTGCTTGACTCAGCTTCTCGCTGGCAACTCCTCCGACCTAGACTCCCCCGCGGATCAGGCCTTGTTCGAGCCCAATCCCTCCGCTGGTTTCCAGAGGCAAAATAGCTCTCCGGCTGAGTTTCTCGGCGCCTCCGGAATCGGGGAAGGATTTTACTCTTCCTATGCTATCAATTCCTCGGCCGCTCTCGAGATCTCTCCCACTTCCAAGCGGGGGAGAGAAGTCGACGCGCAGAACTTCCCGCCCAAATTTTCACCGCAACTGAAAAGGGAAGGAAGTGGAGTATCGAGTTTGATAGACATGGAAATGGAGAAGCTATTGGAGGACTCCGTGCCCTGCCGTGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGGTAAATTATATCATGATTGATCATTAG
Homology
[Close]
BLAST of CmoCh09G013280 vs. Swiss-Prot
Match: BH080_ARATH (Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-51
Identity = 122/225 (54.22%), Postives = 157/225 (69.78%), Query Frame = 1 

Query: 30  MQST--TGGATGSRSGGGG--SGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQST  +GG++G   GGGG  S  GL+R RSAPA W+E LLE++EE+ L+PN CLT+LL 
Sbjct: 1   MQSTHISGGSSGGGGGGGGEVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLT 60

Query: 90  GNSS------------DLDSPADQALFEPNPSAGFQRQNSSPAEFLGASGIG-EGFYSSY 149
           GN++            +  S  +Q L+  +   GF RQNSSPA+FL  SG G +G++S++
Sbjct: 61  GNNNSGGVITSRDDSFEFLSSVEQGLYNHHQGGGFHRQNSSPADFLSGSGSGTDGYFSNF 120

Query: 150 AINS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKRE--GSGVSSLIDMEMEKLLE 209
            I +     S  ++ISPT KR R+++ Q     FS QLK E    G+S ++DM M+K+ E
Sbjct: 121 GIPANYDYLSTNVDISPT-KRSRDMETQ-----FSSQLKEEQMSGGISGMMDMNMDKIFE 180

Query: 210 DSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 231
           DSVPCRVRAKRGCATHPRSIAERVRRTRISDRIR+LQE+VPNMDK
Sbjct: 181 DSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDK 219

[Close]
BLAST of CmoCh09G013280 vs. Swiss-Prot
Match: BH081_ARATH (Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 124/228 (54.39%), Postives = 153/228 (67.11%), Query Frame = 1 

Query: 30  MQSTTGGATGSRSGGGGSGGG-------LARFRSAPAAWLEALLEDEEEDLLRPNQCLTQ 89
           MQ T+ G++G    GGG GGG       L+R RSAPA WLEALLE++EE+ L+PN  LT 
Sbjct: 1   MQPTSVGSSGGGDDGGGRGGGGGLSRSGLSRIRSAPATWLEALLEEDEEESLKPNLGLTD 60

Query: 90  LLAGNSSDLDS---------PADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYA 149
           LL GNS+DL +         P +Q L++     GF RQNS+PA+FL  S   +GF  S+ 
Sbjct: 61  LLTGNSNDLPTSRGSFEFPIPVEQGLYQ---QGGFHRQNSTPADFLSGS---DGFIQSFG 120

Query: 150 INS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKREGS------GVSSLIDMEMEK 209
           I +     S  +++SP SKR RE++A    P+F+ Q+K E S      GVSS+ DM ME 
Sbjct: 121 IQANYDYLSGNIDVSPGSKRSREMEALFSSPEFTSQMKGEQSSGQVPTGVSSMSDMNMEN 180

Query: 210 LLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 231
           L+EDSV  RVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 181 LMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 222

[Close]
BLAST of CmoCh09G013280 vs. Swiss-Prot
Match: BH130_ARATH (Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-18
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1 

Query: 165 LKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEV 224
           L +  S  S ++ ++    L+DSVPC++RAKRGCATHPRSIAERVRRTRIS+R+RKLQE+
Sbjct: 252 LPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQEL 311

Query: 225 VPNMDK 231
           VPNMDK
Sbjct: 312 VPNMDK 317

[Close]
BLAST of CmoCh09G013280 vs. Swiss-Prot
Match: BH122_ARATH (Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-16
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 163 PQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQ 222
           P L    S   SL D+  E+LL DS+PC++RAKRGCATHPRSIAERVRRT+IS+R+RKLQ
Sbjct: 277 PPLAHHMSLPKSLSDI--EQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQ 336

Query: 223 EVVPNMD 230
           ++VPNMD
Sbjct: 337 DLVPNMD 341

[Close]
BLAST of CmoCh09G013280 vs. Swiss-Prot
Match: BH128_ARATH (Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 74/199 (37.19%), Postives = 96/199 (48.24%), Query Frame = 1 

Query: 43  GGGGSGGG--LARFRSAPAAWLEALLEDEEE-DLLRPNQCLTQLLAGNSSDLDSPADQAL 102
           GGG S G   LAR RS+PA +   L  D+    L +P    +     N     S     L
Sbjct: 129 GGGNSSGSYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGHSRLKSQL 188

Query: 103 FEPNPS--AGFQRQNSSPAE-----FLGASGIGEGFYSSYAINS-SAALEISPTSKRGRE 162
              N    A     N +P          A+  G     S+   S S    ++  SKR ++
Sbjct: 189 SFTNHDSLARINEVNETPVHDGSGHSFSAASFGAATTDSWDDGSGSIGFTVTRPSKRSKD 248

Query: 163 VDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRR 222
           +D+  F     P      S  S        +L EDSVPC++RAKRGCATHPRSIAER RR
Sbjct: 249 MDSGLFSQYSLP------SDTSMNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERR 308

Query: 223 TRISDRIRKLQEVVPNMDK 231
           TRIS +++KLQ++VPNMDK
Sbjct: 309 TRISGKLKKLQDLVPNMDK 321

[Close]
BLAST of CmoCh09G013280 vs. TrEMBL
Match: A0A0A0KY01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652220 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.2e-79
Identity = 166/208 (79.81%), Postives = 176/208 (84.62%), Query Frame = 1 

Query: 30  MQSTTGGAT------GSRSGGGGSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQL 89
           MQSTTG A+       SR+  GG+G  LARFRSAPAAWLEALLED+EED L+PN CLTQL
Sbjct: 1   MQSTTGAASTATATASSRTSAGGAG--LARFRSAPAAWLEALLEDDEEDPLKPNPCLTQL 60

Query: 90  LAGNSSDLDS-PADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEI 149
           LA NSSDLDS PAD  LF+PNPS  F RQNSSP EFL  SGI EGFY+SY +NSS  L+I
Sbjct: 61  LAANSSDLDSAPADHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDI 120

Query: 150 SPTSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP 209
           SPTSK   +VDAQNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP
Sbjct: 121 SPTSKPSTDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP 180

Query: 210 RSIAERVRRTRISDRIRKLQEVVPNMDK 231
           RSIAERVRRTRISDRIRKLQEVVPNMDK
Sbjct: 181 RSIAERVRRTRISDRIRKLQEVVPNMDK 206

[Close]
BLAST of CmoCh09G013280 vs. TrEMBL
Match: A0A061FJ20_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 5 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.3e-59
Identity = 143/231 (61.90%), Postives = 165/231 (71.43%), Query Frame = 1 

Query: 30  MQSTTGGATGSRSGGGGSG----GGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQ T GG+  S  GGGG G    GGLARFRSAPA WLEALLE+EEED L+PNQCLTQLL 
Sbjct: 1   MQPTPGGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLT 60

Query: 90  GNSSD--------LDSPADQA-LFEPNPSAGFQRQNSSPAEFLG--ASGIGEGFYSSYAI 149
            NS+           S AD A LFEP    GFQRQNSSPA+FLG  +    + ++S++ I
Sbjct: 61  ANSTTPATRDSGPFSSSADPAGLFEPT---GFQRQNSSPADFLGNNSGAASDAYFSNFGI 120

Query: 150 NS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKRE-----GSGVSSLIDMEMEKLL 209
            +     S  ++ SP+SKR RE+D Q  P KF  QLK E      SGVS+LID++MEKLL
Sbjct: 121 PANYDYLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLL 180

Query: 210 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKVNYIM 236
           EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDKV  ++
Sbjct: 181 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKVGLLV 228

[Close]
BLAST of CmoCh09G013280 vs. TrEMBL
Match: A0A061FK96_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.5e-59
Identity = 142/227 (62.56%), Postives = 163/227 (71.81%), Query Frame = 1 

Query: 30  MQSTTGGATGSRSGGGGSG----GGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQ T GG+  S  GGGG G    GGLARFRSAPA WLEALLE+EEED L+PNQCLTQLL 
Sbjct: 1   MQPTPGGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLT 60

Query: 90  GNSSD--------LDSPADQA-LFEPNPSAGFQRQNSSPAEFLG--ASGIGEGFYSSYAI 149
            NS+           S AD A LFEP    GFQRQNSSPA+FLG  +    + ++S++ I
Sbjct: 61  ANSTTPATRDSGPFSSSADPAGLFEPT---GFQRQNSSPADFLGNNSGAASDAYFSNFGI 120

Query: 150 NS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKRE-----GSGVSSLIDMEMEKLL 209
            +     S  ++ SP+SKR RE+D Q  P KF  QLK E      SGVS+LID++MEKLL
Sbjct: 121 PANYDYLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLL 180

Query: 210 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKV 232
           EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK+
Sbjct: 181 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKI 224

[Close]
BLAST of CmoCh09G013280 vs. TrEMBL
Match: A0A061FKW9_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 142/226 (62.83%), Postives = 162/226 (71.68%), Query Frame = 1 

Query: 30  MQSTTGGATGSRSGGGGSG----GGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQ T GG+  S  GGGG G    GGLARFRSAPA WLEALLE+EEED L+PNQCLTQLL 
Sbjct: 1   MQPTPGGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLT 60

Query: 90  GNSS--------DLDSPADQA-LFEPNPSAGFQRQNSSPAEFLG--ASGIGEGFYSSYAI 149
            NS+           S AD A LFEP    GFQRQNSSPA+FLG  +    + ++S++ I
Sbjct: 61  ANSTTPATRDSGPFSSSADPAGLFEP---TGFQRQNSSPADFLGNNSGAASDAYFSNFGI 120

Query: 150 NS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKRE-----GSGVSSLIDMEMEKLL 209
            +     S  ++ SP+SKR RE+D Q  P KF  QLK E      SGVS+LID++MEKLL
Sbjct: 121 PANYDYLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLL 180

Query: 210 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 231
           EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 181 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 223

[Close]
BLAST of CmoCh09G013280 vs. TrEMBL
Match: A0A061FJR8_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 142/226 (62.83%), Postives = 162/226 (71.68%), Query Frame = 1 

Query: 30  MQSTTGGATGSRSGGGGSG----GGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQ T GG+  S  GGGG G    GGLARFRSAPA WLEALLE+EEED L+PNQCLTQLL 
Sbjct: 1   MQPTPGGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLT 60

Query: 90  GNSS--------DLDSPADQA-LFEPNPSAGFQRQNSSPAEFLG--ASGIGEGFYSSYAI 149
            NS+           S AD A LFEP    GFQRQNSSPA+FLG  +    + ++S++ I
Sbjct: 61  ANSTTPATRDSGPFSSSADPAGLFEP---TGFQRQNSSPADFLGNNSGAASDAYFSNFGI 120

Query: 150 NS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKRE-----GSGVSSLIDMEMEKLL 209
            +     S  ++ SP+SKR RE+D Q  P KF  QLK E      SGVS+LID++MEKLL
Sbjct: 121 PANYDYLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLL 180

Query: 210 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 231
           EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 181 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 223

[Close]
BLAST of CmoCh09G013280 vs. TAIR10
Match: AT1G35460.1 (AT1G35460.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 122/225 (54.22%), Postives = 157/225 (69.78%), Query Frame = 1 

Query: 30  MQST--TGGATGSRSGGGG--SGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQST  +GG++G   GGGG  S  GL+R RSAPA W+E LLE++EE+ L+PN CLT+LL 
Sbjct: 1   MQSTHISGGSSGGGGGGGGEVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLT 60

Query: 90  GNSS------------DLDSPADQALFEPNPSAGFQRQNSSPAEFLGASGIG-EGFYSSY 149
           GN++            +  S  +Q L+  +   GF RQNSSPA+FL  SG G +G++S++
Sbjct: 61  GNNNSGGVITSRDDSFEFLSSVEQGLYNHHQGGGFHRQNSSPADFLSGSGSGTDGYFSNF 120

Query: 150 AINS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKRE--GSGVSSLIDMEMEKLLE 209
            I +     S  ++ISPT KR R+++ Q     FS QLK E    G+S ++DM M+K+ E
Sbjct: 121 GIPANYDYLSTNVDISPT-KRSRDMETQ-----FSSQLKEEQMSGGISGMMDMNMDKIFE 180

Query: 210 DSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 231
           DSVPCRVRAKRGCATHPRSIAERVRRTRISDRIR+LQE+VPNMDK
Sbjct: 181 DSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDK 219

[Close]
BLAST of CmoCh09G013280 vs. TAIR10
Match: AT4G09180.1 (AT4G09180.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 201.4 bits (511), Expect = 6.0e-52
Identity = 124/228 (54.39%), Postives = 153/228 (67.11%), Query Frame = 1 

Query: 30  MQSTTGGATGSRSGGGGSGGG-------LARFRSAPAAWLEALLEDEEEDLLRPNQCLTQ 89
           MQ T+ G++G    GGG GGG       L+R RSAPA WLEALLE++EE+ L+PN  LT 
Sbjct: 1   MQPTSVGSSGGGDDGGGRGGGGGLSRSGLSRIRSAPATWLEALLEEDEEESLKPNLGLTD 60

Query: 90  LLAGNSSDLDS---------PADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYA 149
           LL GNS+DL +         P +Q L++     GF RQNS+PA+FL  S   +GF  S+ 
Sbjct: 61  LLTGNSNDLPTSRGSFEFPIPVEQGLYQ---QGGFHRQNSTPADFLSGS---DGFIQSFG 120

Query: 150 INS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKREGS------GVSSLIDMEMEK 209
           I +     S  +++SP SKR RE++A    P+F+ Q+K E S      GVSS+ DM ME 
Sbjct: 121 IQANYDYLSGNIDVSPGSKRSREMEALFSSPEFTSQMKGEQSSGQVPTGVSSMSDMNMEN 180

Query: 210 LLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 231
           L+EDSV  RVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 181 LMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 222

[Close]
BLAST of CmoCh09G013280 vs. TAIR10
Match: AT2G42280.1 (AT2G42280.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-19
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1 

Query: 165 LKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEV 224
           L +  S  S ++ ++    L+DSVPC++RAKRGCATHPRSIAERVRRTRIS+R+RKLQE+
Sbjct: 252 LPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQEL 311

Query: 225 VPNMDK 231
           VPNMDK
Sbjct: 312 VPNMDK 317

[Close]
BLAST of CmoCh09G013280 vs. TAIR10
Match: AT1G51140.1 (AT1G51140.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-18
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 163 PQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQ 222
           P L    S   SL D+  E+LL DS+PC++RAKRGCATHPRSIAERVRRT+IS+R+RKLQ
Sbjct: 277 PPLAHHMSLPKSLSDI--EQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQ 336

Query: 223 EVVPNMD 230
           ++VPNMD
Sbjct: 337 DLVPNMD 341

[Close]
BLAST of CmoCh09G013280 vs. TAIR10
Match: AT1G05805.1 (AT1G05805.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 6.3e-17
Identity = 74/199 (37.19%), Postives = 96/199 (48.24%), Query Frame = 1 

Query: 43  GGGGSGGG--LARFRSAPAAWLEALLEDEEE-DLLRPNQCLTQLLAGNSSDLDSPADQAL 102
           GGG S G   LAR RS+PA +   L  D+    L +P    +     N     S     L
Sbjct: 129 GGGNSSGSYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGHSRLKSQL 188

Query: 103 FEPNPS--AGFQRQNSSPAE-----FLGASGIGEGFYSSYAINS-SAALEISPTSKRGRE 162
              N    A     N +P          A+  G     S+   S S    ++  SKR ++
Sbjct: 189 SFTNHDSLARINEVNETPVHDGSGHSFSAASFGAATTDSWDDGSGSIGFTVTRPSKRSKD 248

Query: 163 VDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRR 222
           +D+  F     P      S  S        +L EDSVPC++RAKRGCATHPRSIAER RR
Sbjct: 249 MDSGLFSQYSLP------SDTSMNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERR 308

Query: 223 TRISDRIRKLQEVVPNMDK 231
           TRIS +++KLQ++VPNMDK
Sbjct: 309 TRISGKLKKLQDLVPNMDK 321

[Close]
BLAST of CmoCh09G013280 vs. NCBI nr
Match: gi|449447621|ref|XP_004141566.1| (PREDICTED: transcription factor bHLH81 isoform X1 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 3.2e-79
Identity = 166/208 (79.81%), Postives = 176/208 (84.62%), Query Frame = 1 

Query: 30  MQSTTGGAT------GSRSGGGGSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQL 89
           MQSTTG A+       SR+  GG+G  LARFRSAPAAWLEALLED+EED L+PN CLTQL
Sbjct: 1   MQSTTGAASTATATASSRTSAGGAG--LARFRSAPAAWLEALLEDDEEDPLKPNPCLTQL 60

Query: 90  LAGNSSDLDS-PADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEI 149
           LA NSSDLDS PAD  LF+PNPS  F RQNSSP EFL  SGI EGFY+SY +NSS  L+I
Sbjct: 61  LAANSSDLDSAPADHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDI 120

Query: 150 SPTSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP 209
           SPTSK   +VDAQNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP
Sbjct: 121 SPTSKPSTDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP 180

Query: 210 RSIAERVRRTRISDRIRKLQEVVPNMDK 231
           RSIAERVRRTRISDRIRKLQEVVPNMDK
Sbjct: 181 RSIAERVRRTRISDRIRKLQEVVPNMDK 206

[Close]
BLAST of CmoCh09G013280 vs. NCBI nr
Match: gi|659119475|ref|XP_008459678.1| (PREDICTED: transcription factor bHLH80 isoform X1 [Cucumis melo])

HSP 1 Score: 300.4 bits (768), Expect = 2.7e-78
Identity = 165/206 (80.10%), Postives = 173/206 (83.98%), Query Frame = 1 

Query: 30  MQSTTGGAT----GSRSGGGGSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQSTTG A      SR+ GGG G  LARFRSAPAAWLEALLED+EED L+PN CLTQLLA
Sbjct: 1   MQSTTGAAATATASSRTSGGGPG--LARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLA 60

Query: 90  GNSSDLDS-PADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEISP 149
            NSSDL S P D  LF+PNPS  F RQNSSP EFL  SGI EGFY+SY +NSS  L+ISP
Sbjct: 61  ANSSDLVSAPGDHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISP 120

Query: 150 TSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 209
           TSK   +VDAQNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS
Sbjct: 121 TSKPATDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180

Query: 210 IAERVRRTRISDRIRKLQEVVPNMDK 231
           IAERVRRTRISDRIRKLQEVVPNMDK
Sbjct: 181 IAERVRRTRISDRIRKLQEVVPNMDK 204

[Close]
BLAST of CmoCh09G013280 vs. NCBI nr
Match: gi|778708105|ref|XP_011656122.1| (PREDICTED: transcription factor bHLH81 isoform X2 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 5.7e-68
Identity = 150/216 (69.44%), Postives = 167/216 (77.31%), Query Frame = 1 

Query: 30  MQSTTGGAT------GSRSGGGGSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQL 89
           MQSTTG A+       SR+  GG+G  LARFRSAPAAWLEALLED+EED L+PN CLTQL
Sbjct: 1   MQSTTGAASTATATASSRTSAGGAG--LARFRSAPAAWLEALLEDDEEDPLKPNPCLTQL 60

Query: 90  LAGNSSDLDS-PADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEI 149
           LA NSSDLDS PAD  LF+PNPS  F RQNSSP EFL  SGI EGFY+SY +NSS  L+I
Sbjct: 61  LAANSSDLDSAPADHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDI 120

Query: 150 SPTSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP 209
           SPTSK   +VDAQNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP
Sbjct: 121 SPTSKPSTDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHP 180

Query: 210 RSIAERVRRTRISDRIRKLQEVVPNMDKVNYIMIDH 239
           RSIAE  R+T  +D + +  E V  + K    + +H
Sbjct: 181 RSIAE--RQTNTADMLEEAVEYVKFLQKQIQELTEH 212

[Close]
BLAST of CmoCh09G013280 vs. NCBI nr
Match: gi|659119477|ref|XP_008459679.1| (PREDICTED: transcription factor bHLH80 isoform X2 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 4.8e-67
Identity = 149/214 (69.63%), Postives = 164/214 (76.64%), Query Frame = 1 

Query: 30  MQSTTGGAT----GSRSGGGGSGGGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQSTTG A      SR+ GGG G  LARFRSAPAAWLEALLED+EED L+PN CLTQLLA
Sbjct: 1   MQSTTGAAATATASSRTSGGGPG--LARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLA 60

Query: 90  GNSSDLDS-PADQALFEPNPSAGFQRQNSSPAEFLGASGIGEGFYSSYAINSSAALEISP 149
            NSSDL S P D  LF+PNPS  F RQNSSP EFL  SGI EGFY+SY +NSS  L+ISP
Sbjct: 61  ANSSDLVSAPGDHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISP 120

Query: 150 TSKRGREVDAQNFPPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 209
           TSK   +VDAQNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS
Sbjct: 121 TSKPATDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180

Query: 210 IAERVRRTRISDRIRKLQEVVPNMDKVNYIMIDH 239
           IAE  R+T  +D + +  E V  + K    + +H
Sbjct: 181 IAE--RQTNTADMLEEAVEYVKFLQKQIQELTEH 210

[Close]
BLAST of CmoCh09G013280 vs. NCBI nr
Match: gi|590603810|ref|XP_007020100.1| (Basic helix-loop-helix DNA-binding superfamily protein isoform 5 [Theobroma cacao])

HSP 1 Score: 236.5 bits (602), Expect = 4.8e-59
Identity = 143/231 (61.90%), Postives = 165/231 (71.43%), Query Frame = 1 

Query: 30  MQSTTGGATGSRSGGGGSG----GGLARFRSAPAAWLEALLEDEEEDLLRPNQCLTQLLA 89
           MQ T GG+  S  GGGG G    GGLARFRSAPA WLEALLE+EEED L+PNQCLTQLL 
Sbjct: 1   MQPTPGGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLT 60

Query: 90  GNSSD--------LDSPADQA-LFEPNPSAGFQRQNSSPAEFLG--ASGIGEGFYSSYAI 149
            NS+           S AD A LFEP    GFQRQNSSPA+FLG  +    + ++S++ I
Sbjct: 61  ANSTTPATRDSGPFSSSADPAGLFEPT---GFQRQNSSPADFLGNNSGAASDAYFSNFGI 120

Query: 150 NS-----SAALEISPTSKRGREVDAQNFPPKFSPQLKRE-----GSGVSSLIDMEMEKLL 209
            +     S  ++ SP+SKR RE+D Q  P KF  QLK E      SGVS+LID++MEKLL
Sbjct: 121 PANYDYLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLL 180

Query: 210 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKVNYIM 236
           EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDKV  ++
Sbjct: 181 EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKVGLLV 228

The following BLAST results are available for this feature:
BLAST of CmoCh09G013280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH080_ARATH2.2e-5154.22Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=2 SV=1[more]
BH081_ARATH1.1e-5054.39Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1[more]
BH130_ARATH3.1e-1866.67Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1[more]
BH122_ARATH1.0e-1667.16Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1[more]
BH128_ARATH1.1e-1537.19Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1[more]
BLAST of CmoCh09G013280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY01_CUCSA2.2e-7979.81Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652220 PE=4 SV=1[more]
A0A061FJ20_THECC3.3e-5961.90Basic helix-loop-helix DNA-binding superfamily protein isoform 5 OS=Theobroma ca... [more]
A0A061FK96_THECC7.5e-5962.56Basic helix-loop-helix DNA-binding superfamily protein isoform 3 OS=Theobroma ca... [more]
A0A061FKW9_THECC1.3e-5862.83Basic helix-loop-helix DNA-binding superfamily protein isoform 2 OS=Theobroma ca... [more]
A0A061FJR8_THECC1.3e-5862.83Basic helix-loop-helix DNA-binding superfamily protein isoform 1 OS=Theobroma ca... [more]
BLAST of CmoCh09G013280 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G35460.11.2e-5254.22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G09180.16.0e-5254.39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G42280.11.8e-1966.67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G51140.15.7e-1867.16 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G05805.16.3e-1737.19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of CmoCh09G013280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447621|ref|XP_004141566.1|3.2e-7979.81PREDICTED: transcription factor bHLH81 isoform X1 [Cucumis sativus][more]
gi|659119475|ref|XP_008459678.1|2.7e-7880.10PREDICTED: transcription factor bHLH80 isoform X1 [Cucumis melo][more]
gi|778708105|ref|XP_011656122.1|5.7e-6869.44PREDICTED: transcription factor bHLH81 isoform X2 [Cucumis sativus][more]
gi|659119477|ref|XP_008459679.1|4.8e-6769.63PREDICTED: transcription factor bHLH80 isoform X2 [Cucumis melo][more]
gi|590603810|ref|XP_007020100.1|4.8e-5961.90Basic helix-loop-helix DNA-binding superfamily protein isoform 5 [Theobroma caca... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G013280.1CmoCh09G013280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 203..233
score: 4.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 198..238
score: 9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 201..231
score: 9.0
NoneNo IPR availablePANTHERPTHR16223FAMILY NOT NAMEDcoord: 103..232
score: 7.1
NoneNo IPR availablePANTHERPTHR16223:SF29TRANSCRIPTION FACTOR BHLH117-RELATEDcoord: 103..232
score: 7.1