Cla003872 (gene) Watermelon (97103) v1

Overview
NameCla003872
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTranscription factor bHLH129 (AHRD V1 *-*- F4IQ66_ARATH)
LocationChr8 : 4147760 .. 4148967 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGGTAATCATCTTATTTAGAAGCCTCTGTTTCGCGATTCCCATTCAGGATTTCATTTCACTCTAGTTTTCCTTTGATTATGGTCTCACCAGCAACCTAGTTTATTTTGATTTTTAAGTGAAATTTTCGGCAGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTAGTTCTTTTCACCTTATATCTTCCTTCACTGTTTTCGTTGACTACTTTTCAATAACCAGTCTCACCTCTCCATAACATATGCTGACTTTTGAGATGGATTCCTTTGCTCTATTCACCGTTCATCATCTGTGCTCTCAACTTTGACATTCTATCCCTATCCAATTTGGTGGCCTTTCTGCTGTTATTTTATCGAATAACCTTACTCTTTTTTCTATTATTTGTTGCCAAGCTATGTCAAATCATTACTTGTTAGTCTAATCACTATGTCGGGTCAACAAAACACACAACAAAGAGGTATGTCGATAAGTCGATTACTTATTTATTTTCTTTTTTTTGGTTTTCTTGATGGTAGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGGTAAACTATGTCATGATTGATCATTATGATTGAATTTAGATATATCTTTTGTGATATATATTGAGAATGACTGTATTTTGTTCTGCCATGTGATTATTCTTGCAGTTCCTTTCTTGA

mRNA sequence

ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGTTCCTTTCTTGA

Coding sequence (CDS)

ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGTTCCTTTCTTGA

Protein sequence

MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKFLS
Homology
[Close]
BLAST of Cla003872 vs. Swiss-Prot
Match: BH080_ARATH (Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.8e-54
Identity = 123/227 (54.19%), Postives = 153/227 (67.40%), Query Frame = 1 

Query: 1   MQSTTGAGATGSRSSGGGTGG-----GLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQL 60
           MQST  +G  GS   GGG GG     GL+R RSAPA W+E LLE+DEE+ LKPN CLT+L
Sbjct: 1   MQSTHISG--GSSGGGGGGGGEVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTEL 60

Query: 61  LAA------------DSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIG-EGFYT 120
           L              DS +  S  +Q L++ +    FHRQNSSPA+FL+ SG G +G+++
Sbjct: 61  LTGNNNSGGVITSRDDSFEFLSSVEQGLYNHHQGGGFHRQNSSPADFLSGSGSGTDGYFS 120

Query: 121 AYALNS-----SPTLDISPTSKRAREVDPQNFSPKFSPQLKRE--GSGVSSLIDMEMEKL 180
            + + +     S  +DISPT KR+R+++ Q     FS QLK E    G+S ++DM M+K+
Sbjct: 121 NFGIPANYDYLSTNVDISPT-KRSRDMETQ-----FSSQLKEEQMSGGISGMMDMNMDKI 180

Query: 181 LEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 203
            EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIR+LQE+VPNMDK
Sbjct: 181 FEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDK 219

[Close]
BLAST of Cla003872 vs. Swiss-Prot
Match: BH081_ARATH (Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.6e-53
Identity = 121/225 (53.78%), Postives = 148/225 (65.78%), Query Frame = 1 

Query: 5   TGAGATGSRSSGGGTGGG-------LARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLA 64
           T  G++G    GGG GGG       L+R RSAPA WLEALLE+DEE+ LKPN  LT LL 
Sbjct: 4   TSVGSSGGGDDGGGRGGGGGLSRSGLSRIRSAPATWLEALLEEDEEESLKPNLGLTDLLT 63

Query: 65  ADSSDLDS---------PADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNS 124
            +S+DL +         P +Q L+       FHRQNS+PA+FL+ S   +GF  ++ + +
Sbjct: 64  GNSNDLPTSRGSFEFPIPVEQGLYQQG---GFHRQNSTPADFLSGS---DGFIQSFGIQA 123

Query: 125 -----SPTLDISPTSKRAREVDPQNFSPKFSPQLKREGS------GVSSLIDMEMEKLLE 184
                S  +D+SP SKR+RE++    SP+F+ Q+K E S      GVSS+ DM ME L+E
Sbjct: 124 NYDYLSGNIDVSPGSKRSREMEALFSSPEFTSQMKGEQSSGQVPTGVSSMSDMNMENLME 183

Query: 185 DSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 203
           DSV  RVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 184 DSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 222

[Close]
BLAST of Cla003872 vs. Swiss-Prot
Match: BH130_ARATH (Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.1e-19
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 137 LKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEV 196
           L +  S  S ++ ++    L+DSVPC++RAKRGCATHPRSIAERVRRTRIS+R+RKLQE+
Sbjct: 252 LPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQEL 311

Query: 197 VPNMDK 203
           VPNMDK
Sbjct: 312 VPNMDK 317


HSP 2 Score: 32.7 bits (73), Expect = 5.7e+00
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 1 

Query: 19 TGGGLARFRSAPAAWLEALLEDDE 43
          TG GL RFRSAP++ L A ++DD+
Sbjct: 13 TGSGLLRFRSAPSSVLAAFVDDDK 36

[Close]
BLAST of Cla003872 vs. Swiss-Prot
Match: BH122_ARATH (Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 135 PQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQ 194
           P L    S   SL D+  E+LL DS+PC++RAKRGCATHPRSIAERVRRT+IS+R+RKLQ
Sbjct: 277 PPLAHHMSLPKSLSDI--EQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQ 336

Query: 195 EVVPNMD 202
           ++VPNMD
Sbjct: 337 DLVPNMD 341

[Close]
BLAST of Cla003872 vs. Swiss-Prot
Match: BH128_ARATH (Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-17
Identity = 76/209 (36.36%), Postives = 97/209 (46.41%), Query Frame = 1 

Query: 12  SRSSGGGTGGG---LARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPA- 71
           S   GGG   G   LAR RS+PA +   L  D      K N  L Q  +  S    S   
Sbjct: 125 SNDIGGGNSSGSYSLARQRSSPADFFTYLASD------KNNFSLNQPTSDYSPQGGSNGG 184

Query: 72  -------DQPLFDPNPSPA-FHRQNSSPAEFLAASGIGEGFYTAYALNS------SPTLD 131
                   Q  F  + S A  +  N +P    +        + A   +S      S    
Sbjct: 185 RGHSRLKSQLSFTNHDSLARINEVNETPVHDGSGHSFSAASFGAATTDSWDDGSGSIGFT 244

Query: 132 ISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATH 191
           ++  SKR++++D   FS    P      S  S        +L EDSVPC++RAKRGCATH
Sbjct: 245 VTRPSKRSKDMDSGLFSQYSLP------SDTSMNYMDNFMQLPEDSVPCKIRAKRGCATH 304

Query: 192 PRSIAERVRRTRISDRIRKLQEVVPNMDK 203
           PRSIAER RRTRIS +++KLQ++VPNMDK
Sbjct: 305 PRSIAERERRTRISGKLKKLQDLVPNMDK 321


HSP 2 Score: 31.2 bits (69), Expect = 1.7e+01
Identity = 15/39 (38.46%), Postives = 25/39 (64.10%), Query Frame = 1 

Query: 2  QSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLED 41
          QS++   ++  RSS  G GGGL R+ SAP ++L +++++
Sbjct: 3  QSSSSTSSSSQRSSLPG-GGGLIRYGSAPGSFLNSVVDE 40

[Close]
BLAST of Cla003872 vs. TrEMBL
Match: A0A0A0KY01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652220 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 7.5e-92
Identity = 177/206 (85.92%), Postives = 185/206 (89.81%), Query Frame = 1 

Query: 1   MQSTTGAGATGSRSSGGGT---GGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLA 60
           MQSTTGA +T + ++   T   G GLARFRSAPAAWLEALLEDDEEDPLKPN CLTQLLA
Sbjct: 1   MQSTTGAASTATATASSRTSAGGAGLARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLA 60

Query: 61  ADSSDLDS-PADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISP 120
           A+SSDLDS PAD PLFDPNPSPAFHRQNSSP EFLA SGI EGFYT+Y LNSSPTLDISP
Sbjct: 61  ANSSDLDSAPADHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISP 120

Query: 121 TSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180
           TSK + +VD QNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS
Sbjct: 121 TSKPSTDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180

Query: 181 IAERVRRTRISDRIRKLQEVVPNMDK 203
           IAERVRRTRISDRIRKLQEVVPNMDK
Sbjct: 181 IAERVRRTRISDRIRKLQEVVPNMDK 206

[Close]
BLAST of Cla003872 vs. TrEMBL
Match: A0A061FK96_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1 

Query: 8   GATGSRSSGGGTGG-----GLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAA---- 67
           G +GS S GGG GG     GLARFRSAPA WLEALLE++EEDPLKPN CLTQLL A    
Sbjct: 6   GGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLTANSTT 65

Query: 68  ----DSSDLDSPADQP-LFDPNPSPAFHRQNSSPAEFLA--ASGIGEGFYTAYALNS--- 127
               DS    S AD   LF+P     F RQNSSPA+FL   +    + +++ + + +   
Sbjct: 66  PATRDSGPFSSSADPAGLFEPT---GFQRQNSSPADFLGNNSGAASDAYFSNFGIPANYD 125

Query: 128 --SPTLDISPTSKRAREVDPQNFSPKFSPQLKRE-----GSGVSSLIDMEMEKLLEDSVP 187
             SP +D SP+SKRARE+D Q    KF  QLK E      SGVS+LID++MEKLLEDSVP
Sbjct: 126 YLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLLEDSVP 185

Query: 188 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 203
           CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 186 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 223

[Close]
BLAST of Cla003872 vs. TrEMBL
Match: A0A061FKW9_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1 

Query: 8   GATGSRSSGGGTGG-----GLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAA---- 67
           G +GS S GGG GG     GLARFRSAPA WLEALLE++EEDPLKPN CLTQLL A    
Sbjct: 6   GGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLTANSTT 65

Query: 68  ----DSSDLDSPADQP-LFDPNPSPAFHRQNSSPAEFLA--ASGIGEGFYTAYALNS--- 127
               DS    S AD   LF+P     F RQNSSPA+FL   +    + +++ + + +   
Sbjct: 66  PATRDSGPFSSSADPAGLFEPT---GFQRQNSSPADFLGNNSGAASDAYFSNFGIPANYD 125

Query: 128 --SPTLDISPTSKRAREVDPQNFSPKFSPQLKRE-----GSGVSSLIDMEMEKLLEDSVP 187
             SP +D SP+SKRARE+D Q    KF  QLK E      SGVS+LID++MEKLLEDSVP
Sbjct: 126 YLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLLEDSVP 185

Query: 188 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 203
           CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 186 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 223

[Close]
BLAST of Cla003872 vs. TrEMBL
Match: A0A061FJR8_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1 

Query: 8   GATGSRSSGGGTGG-----GLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAA---- 67
           G +GS S GGG GG     GLARFRSAPA WLEALLE++EEDPLKPN CLTQLL A    
Sbjct: 6   GGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLTANSTT 65

Query: 68  ----DSSDLDSPADQP-LFDPNPSPAFHRQNSSPAEFLA--ASGIGEGFYTAYALNS--- 127
               DS    S AD   LF+P     F RQNSSPA+FL   +    + +++ + + +   
Sbjct: 66  PATRDSGPFSSSADPAGLFEPT---GFQRQNSSPADFLGNNSGAASDAYFSNFGIPANYD 125

Query: 128 --SPTLDISPTSKRAREVDPQNFSPKFSPQLKRE-----GSGVSSLIDMEMEKLLEDSVP 187
             SP +D SP+SKRARE+D Q    KF  QLK E      SGVS+LID++MEKLLEDSVP
Sbjct: 126 YLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLLEDSVP 185

Query: 188 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 203
           CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 186 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 223

[Close]
BLAST of Cla003872 vs. TrEMBL
Match: A0A061FS23_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_036484 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1 

Query: 8   GATGSRSSGGGTGG-----GLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAA---- 67
           G +GS S GGG GG     GLARFRSAPA WLEALLE++EEDPLKPN CLTQLL A    
Sbjct: 6   GGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLTANSTT 65

Query: 68  ----DSSDLDSPADQP-LFDPNPSPAFHRQNSSPAEFLA--ASGIGEGFYTAYALNS--- 127
               DS    S AD   LF+P     F RQNSSPA+FL   +    + +++ + + +   
Sbjct: 66  PATRDSGPFSSSADPAGLFEPT---GFQRQNSSPADFLGNNSGAASDAYFSNFGIPANYD 125

Query: 128 --SPTLDISPTSKRAREVDPQNFSPKFSPQLKRE-----GSGVSSLIDMEMEKLLEDSVP 187
             SP +D SP+SKRARE+D Q    KF  QLK E      SGVS+LID++MEKLLEDSVP
Sbjct: 126 YLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLLEDSVP 185

Query: 188 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 203
           CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 186 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 223

[Close]
BLAST of Cla003872 vs. NCBI nr
Match: gi|449447621|ref|XP_004141566.1| (PREDICTED: transcription factor bHLH81 isoform X1 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 1.1e-91
Identity = 177/206 (85.92%), Postives = 185/206 (89.81%), Query Frame = 1 

Query: 1   MQSTTGAGATGSRSSGGGT---GGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLA 60
           MQSTTGA +T + ++   T   G GLARFRSAPAAWLEALLEDDEEDPLKPN CLTQLLA
Sbjct: 1   MQSTTGAASTATATASSRTSAGGAGLARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLA 60

Query: 61  ADSSDLDS-PADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISP 120
           A+SSDLDS PAD PLFDPNPSPAFHRQNSSP EFLA SGI EGFYT+Y LNSSPTLDISP
Sbjct: 61  ANSSDLDSAPADHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISP 120

Query: 121 TSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180
           TSK + +VD QNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS
Sbjct: 121 TSKPSTDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180

Query: 181 IAERVRRTRISDRIRKLQEVVPNMDK 203
           IAERVRRTRISDRIRKLQEVVPNMDK
Sbjct: 181 IAERVRRTRISDRIRKLQEVVPNMDK 206

[Close]
BLAST of Cla003872 vs. NCBI nr
Match: gi|659119475|ref|XP_008459678.1| (PREDICTED: transcription factor bHLH80 isoform X1 [Cucumis melo])

HSP 1 Score: 344.7 bits (883), Expect = 1.1e-91
Identity = 181/206 (87.86%), Postives = 185/206 (89.81%), Query Frame = 1 

Query: 1   MQSTTGAGATG---SRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLA 60
           MQSTTGA AT    SR+SGGG G  LARFRSAPAAWLEALLEDDEEDPLKPN CLTQLLA
Sbjct: 1   MQSTTGAAATATASSRTSGGGPG--LARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLA 60

Query: 61  ADSSDLDS-PADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISP 120
           A+SSDL S P D PLFDPNPSPAFHRQNSSP EFLA SGI EGFYT+Y LNSSPTLDISP
Sbjct: 61  ANSSDLVSAPGDHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISP 120

Query: 121 TSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180
           TSK A +VD QNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS
Sbjct: 121 TSKPATDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180

Query: 181 IAERVRRTRISDRIRKLQEVVPNMDK 203
           IAERVRRTRISDRIRKLQEVVPNMDK
Sbjct: 181 IAERVRRTRISDRIRKLQEVVPNMDK 204

[Close]
BLAST of Cla003872 vs. NCBI nr
Match: gi|778708105|ref|XP_011656122.1| (PREDICTED: transcription factor bHLH81 isoform X2 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 3.3e-80
Identity = 160/206 (77.67%), Postives = 173/206 (83.98%), Query Frame = 1 

Query: 1   MQSTTGAGATGSRSSGGGT---GGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLA 60
           MQSTTGA +T + ++   T   G GLARFRSAPAAWLEALLEDDEEDPLKPN CLTQLLA
Sbjct: 1   MQSTTGAASTATATASSRTSAGGAGLARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLA 60

Query: 61  ADSSDLDS-PADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISP 120
           A+SSDLDS PAD PLFDPNPSPAFHRQNSSP EFLA SGI EGFYT+Y LNSSPTLDISP
Sbjct: 61  ANSSDLDSAPADHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISP 120

Query: 121 TSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180
           TSK + +VD QNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS
Sbjct: 121 TSKPSTDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180

Query: 181 IAERVRRTRISDRIRKLQEVVPNMDK 203
           IAE  R+T  +D + +  E V  + K
Sbjct: 181 IAE--RQTNTADMLEEAVEYVKFLQK 204

[Close]
BLAST of Cla003872 vs. NCBI nr
Match: gi|659119477|ref|XP_008459679.1| (PREDICTED: transcription factor bHLH80 isoform X2 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 3.3e-80
Identity = 164/206 (79.61%), Postives = 173/206 (83.98%), Query Frame = 1 

Query: 1   MQSTTGAGATG---SRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLA 60
           MQSTTGA AT    SR+SGGG G  LARFRSAPAAWLEALLEDDEEDPLKPN CLTQLLA
Sbjct: 1   MQSTTGAAATATASSRTSGGGPG--LARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLA 60

Query: 61  ADSSDLDS-PADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISP 120
           A+SSDL S P D PLFDPNPSPAFHRQNSSP EFLA SGI EGFYT+Y LNSSPTLDISP
Sbjct: 61  ANSSDLVSAPGDHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISP 120

Query: 121 TSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180
           TSK A +VD QNF PKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS
Sbjct: 121 TSKPATDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRS 180

Query: 181 IAERVRRTRISDRIRKLQEVVPNMDK 203
           IAE  R+T  +D + +  E V  + K
Sbjct: 181 IAE--RQTNTADMLEEAVEYVKFLQK 202

[Close]
BLAST of Cla003872 vs. NCBI nr
Match: gi|590603802|ref|XP_007020098.1| (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 [Theobroma cacao])

HSP 1 Score: 234.2 bits (596), Expect = 2.1e-58
Identity = 135/221 (61.09%), Postives = 155/221 (70.14%), Query Frame = 1 

Query: 8   GATGSRSSGGGTGG-----GLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAA---- 67
           G +GS S GGG GG     GLARFRSAPA WLEALLE++EEDPLKPN CLTQLL A    
Sbjct: 6   GGSGSSSGGGGGGGELSRGGLARFRSAPATWLEALLEEEEEDPLKPNQCLTQLLTANSTT 65

Query: 68  ----DSSDLDSPADQP-LFDPNPSPAFHRQNSSPAEFLA--ASGIGEGFYTAYALNS--- 127
               DS    S AD   LF+P     F RQNSSPA+FL   +    + +++ + + +   
Sbjct: 66  PATRDSGPFSSSADPAGLFEPT---GFQRQNSSPADFLGNNSGAASDAYFSNFGIPANYD 125

Query: 128 --SPTLDISPTSKRAREVDPQNFSPKFSPQLKRE-----GSGVSSLIDMEMEKLLEDSVP 187
             SP +D SP+SKRARE+D Q    KF  QLK E      SGVS+LID++MEKLLEDSVP
Sbjct: 126 YLSPNIDASPSSKRARELDTQYPPTKFQSQLKGEQRGQISSGVSNLIDVDMEKLLEDSVP 185

Query: 188 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDK 203
           CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQE+VPNMDK
Sbjct: 186 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 223

The following BLAST results are available for this feature:
BLAST of Cla003872 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH080_ARATH6.8e-5454.19Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=2 SV=1[more]
BH081_ARATH7.6e-5353.78Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1[more]
BH130_ARATH7.1e-1966.67Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1[more]
BH122_ARATH1.8e-1767.16Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1[more]
BH128_ARATH2.3e-1736.36Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1[more]
BLAST of Cla003872 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY01_CUCSA7.5e-9285.92Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652220 PE=4 SV=1[more]
A0A061FK96_THECC1.4e-5861.09Basic helix-loop-helix DNA-binding superfamily protein isoform 3 OS=Theobroma ca... [more]
A0A061FKW9_THECC1.4e-5861.09Basic helix-loop-helix DNA-binding superfamily protein isoform 2 OS=Theobroma ca... [more]
A0A061FJR8_THECC1.4e-5861.09Basic helix-loop-helix DNA-binding superfamily protein isoform 1 OS=Theobroma ca... [more]
A0A061FS23_THECC1.4e-5861.09Basic helix-loop-helix DNA-binding superfamily protein isoform 4 OS=Theobroma ca... [more]
BLAST of Cla003872 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447621|ref|XP_004141566.1|1.1e-9185.92PREDICTED: transcription factor bHLH81 isoform X1 [Cucumis sativus][more]
gi|659119475|ref|XP_008459678.1|1.1e-9187.86PREDICTED: transcription factor bHLH80 isoform X1 [Cucumis melo][more]
gi|778708105|ref|XP_011656122.1|3.3e-8077.67PREDICTED: transcription factor bHLH81 isoform X2 [Cucumis sativus][more]
gi|659119477|ref|XP_008459679.1|3.3e-8079.61PREDICTED: transcription factor bHLH80 isoform X2 [Cucumis melo][more]
gi|590603802|ref|XP_007020098.1|2.1e-5861.09Basic helix-loop-helix DNA-binding superfamily protein isoform 3 [Theobroma caca... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0042335 cuticle development
biological_process GO:0006366 transcription from RNA polymerase II promoter
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0001046 core promoter sequence-specific DNA binding
molecular_function GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU42263watermelon EST collection version 2.0transcribed_cluster
WMU51321watermelon EST collection version 2.0transcribed_cluster
WMU78386watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003872Cla003872.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU42263WMU42263transcribed_cluster
WMU78386WMU78386transcribed_cluster
WMU51321WMU51321transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 175..202
score: 8.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 170..205
score: 9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 173..202
score: 1.4
NoneNo IPR availablePANTHERPTHR16223FAMILY NOT NAMEDcoord: 1..202
score: 5.2
NoneNo IPR availablePANTHERPTHR16223:SF36SUBFAMILY NOT NAMEDcoord: 1..202
score: 5.2