Carg19113 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19113
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	photosystem II family protein
Location	Cucurbita_argyrosperma_scaffold_112 : 245167 .. 245673 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCGAACACTCCTAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCTCCCAAGCCCAAATCCACCATTTCCGCCGCCGCCGTCCACCACCGGCGCCGCCGCGAGCTACTGTCACTAACCGCCTCTGTTCTAGCAGCGCCGTGGGTTCTGCTTCCTCCGGCGCCGGCACAAGCCTCGAACGATGAGGAGTACGTGAAGGACACAAATGAGGTGATAAACAAGGTGAGAACGACGATCAAAATGGACAAAAACGACCCGAATGTGGCGGAAGCCGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAGTACAGGAAGGAGAAATCTCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTTTGAATGCGGTCTCGGGGCATTACGTTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATCTTGGAAGAGATGGAGACGGCGGAGAAGGCTCTGTCAAGAGGGAGATGA

mRNA sequence

ATGGCCTCTCGAACACTCCTAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCTCCCAAGCCCAAATCCACCATTTCCGCCGCCGCCGTCCACCACCGGCGCCGCCGCGAGCTACTGTCACTAACCGCCTCTGTTCTAGCAGCGCCGTGGGTTCTGCTTCCTCCGGCGCCGGCACAAGCCTCGAACGATGAGGAGTACGTGAAGGACACAAATGAGGTGATAAACAAGGTGAGAACGACGATCAAAATGGACAAAAACGACCCGAATGTGGCGGAAGCCGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAGTACAGGAAGGAGAAATCTCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTTTGAATGCGGTCTCGGGGCATTACGTTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATCTTGGAAGAGATGGAGACGGCGGAGAAGGCTCTGTCAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCCTCTCGAACACTCCTAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCTCCCAAGCCCAAATCCACCATTTCCGCCGCCGCCGTCCACCACCGGCGCCGCCGCGAGCTACTGTCACTAACCGCCTCTGTTCTAGCAGCGCCGTGGGTTCTGCTTCCTCCGGCGCCGGCACAAGCCTCGAACGATGAGGAGTACGTGAAGGACACAAATGAGGTGATAAACAAGGTGAGAACGACGATCAAAATGGACAAAAACGACCCGAATGTGGCGGAAGCCGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAGTACAGGAAGGAGAAATCTCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTTTGAATGCGGTCTCGGGGCATTACGTTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATCTTGGAAGAGATGGAGACGGCGGAGAAGGCTCTGTCAAGAGGGAGATGA

Protein sequence

MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHRRRRELLSLTASVLAAPWVLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR

Homology

[Close]

BLAST of Carg19113 vs. NCBI nr
Match: XP_023529218.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-66
Identity = 140/168 (83.33%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLAAPWVLLPPAPA 60
           MASRTLLTPCTSKSQPLI                           SVLAAPWVLLPPAPA
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHPRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEM+TAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Carg19113 vs. NCBI nr
Match: XP_022930794.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 140/168 (83.33%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLAAPWVLLPPAPA 60
           MASRTLLTPCTSKSQPLI                           SVLAAPWVLLPPAPA
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAAIHHPRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]

BLAST of Carg19113 vs. NCBI nr
Match: XP_022988975.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 138/168 (82.14%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLIXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLAAPWVLLPPAPA 60
           MASR LLTPCTSKSQPLI                           SVLAAPWVLLPPAPA
Sbjct: 1   MASRALLTPCTSKSQPLIIPPKPKSTISAAAVHHPRRRELLSLTASVLAAPWVLLPPAPA 60

Query: 61  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120
           QASNDEEYVKDTNEVI+KVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 61  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 120

Query: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEM+TAEKALSRGR
Sbjct: 121 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Carg19113 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55
Identity = 144/172 (83.72%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLI----XXXXXXXXXXXXXXXXXXXXXXXXXXXSVLAAPWVLLP 60
           MAS TL+TP TSKSQPLI       XXXXXXXXXXXXXXXXXX      SVLA  WVL P
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLFP 60

Query: 61  PAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSL 120
           PAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEKSL
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           LGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Carg19113 vs. NCBI nr
Match: XP_023554625.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.2 bits (570), Expect = 3.4e-55
Identity = 145/173 (83.82%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQPLI-----XXXXXXXXXXXXXXXXXXXXXXXXXXXSVLAAPWVLL 60
           MAS TL+TP TSKSQPLI       XXXXXXXXXXXXXXXXXXX      SVLA  WVL 
Sbjct: 1   MASPTLITPSTSKSQPLIVPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60

Query: 61  PPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKS 120
           PPAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]

BLAST of Carg19113 vs. TAIR10
Match: AT1G03600.1 (photosystem II family protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.9e-48
Identity = 94/114 (82.46%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 55  LPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 114
           L PAP  A+ DEEY+KDT+ VI+KVR+T+ M K DPNVA+AVAELRE+SNSWVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 115 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           +LLG+ASFRD+YSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL+RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Carg19113 vs. TAIR10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-07
Identity = 26/98 (26.53%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 68  YVKDTNEVINKVRTTIKMD-KNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRASFRDMY 127
           Y+K   EV+  +R ++K + K++     +    +ES   +++ +R +K++ G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 128 SALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 165
           + + A++  Y   GP+AP+P + K  IL+++  AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of Carg19113 vs. Swiss-Prot
Match: sp|Q9LR64|PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.2e-47
Identity = 94/114 (82.46%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 55  LPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 114
           L PAP  A+ DEEY+KDT+ VI+KVR+T+ M K DPNVA+AVAELRE+SNSWVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 115 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           +LLG+ASFRD+YSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL+RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Carg19113 vs. Swiss-Prot
Match: sp|Q9ZVZ9|PB27B_ARATH (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-06
Identity = 26/98 (26.53%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 68  YVKDTNEVINKVRTTIKMD-KNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRASFRDMY 127
           Y+K   EV+  +R ++K + K++     +    +ES   +++ +R +K++ G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 128 SALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 165
           + + A++  Y   GP+AP+P + K  IL+++  AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of Carg19113 vs. TrEMBL
Match: tr|A0A1S3C1X2|A0A1S3C1X2_CUCME (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 119/169 (70.41%), Postives = 130/169 (76.92%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQ-PLIXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLAAPWVLLPPAP 60
           MAS TL+TPCTSKSQ P I                           SVLA  +VL P +P
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  AQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGR 120
           A A++D+EYVKDTNEVI KVRTTI MD+NDPNVA AVA+LRESSNSWVAKYRKEK+LLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           ASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Carg19113 vs. TrEMBL
Match: tr|A0A0A0K1S2|A0A0A0K1S2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 118/169 (69.82%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 1   MASRTLLTPCTSKSQ-PLIXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLAAPWVLLPPAP 60
           MAS TL+TPCTSKSQ P I                           SVLA  +VL P +P
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  AQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGR 120
           A A++D+EYVKDTNEVI KVRTTI MD+NDPNVA AVA+LRESSN WVAKYRKEK+LLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           ASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Carg19113 vs. TrEMBL
Match: tr|A0A2C9VEZ3|A0A2C9VEZ3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G098700 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.8e-47
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 53  VLLPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRK 112
           +L P APA A++DEEYVKDT  VINKVRTT+ MD+NDPNVAEAVA+LRE+SNSWVAKYR+
Sbjct: 58  LLSPVAPAHAASDEEYVKDTEVVINKVRTTVNMDRNDPNVAEAVADLRETSNSWVAKYRR 117

Query: 113 EKSLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           EKSLLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 118 EKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 173

[Close]

BLAST of Carg19113 vs. TrEMBL
Match: tr|A0A1J3GIL5|A0A1J3GIL5_NOCCA (Photosystem II repair protein PSB27-H1, chloroplastic (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR10462_c0_g1_i1_g.35064 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.0e-47
Identity = 99/114 (86.84%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 55  LPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 114
           L PAPA A+ DEEYVKDT+EVI+KVRTT+ M+K DPNVA+AVAELRE+SNSWVAKYRKEK
Sbjct: 87  LAPAPASAAEDEEYVKDTSEVISKVRTTLSMEKTDPNVADAVAELREASNSWVAKYRKEK 146

Query: 115 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           +LLG+ASFRD+YSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Sbjct: 147 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 200

[Close]

BLAST of Carg19113 vs. TrEMBL
Match: tr|A0A1J3DSR2|A0A1J3DSR2_NOCCA (Photosystem II repair protein PSB27-H1, chloroplastic OS=Noccaea caerulescens OX=107243 GN=GA_TR12432_c0_g1_i1_g.39825 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.0e-47
Identity = 99/114 (86.84%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 55  LPPAPAQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEK 114
           L PAPA A+ DEEYVKDT+EVI+KVRTT+ M+K DPNVA+AVAELRE+SNSWVAKYRKEK
Sbjct: 60  LAPAPASAAEDEEYVKDTSEVISKVRTTLSMEKTDPNVADAVAELREASNSWVAKYRKEK 119

Query: 115 SLLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 169
           +LLG+ASFRD+YSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR
Sbjct: 120 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 173

The following BLAST results are available for this feature:

BLAST of Carg19113 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529218.1	1.5e-66	83.33	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp...	[more]
XP_022930794.1	2.5e-66	83.33	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022988975.1	2.1e-65	82.14	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022952622.1	2.6e-55	83.72	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ...	[more]
XP_023554625.1	3.4e-55	83.82	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp...	[more]

BLAST of Carg19113 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03600.1	2.9e-48	82.46	photosystem II family protein	[more]
AT1G05385.1	5.5e-07	26.53	photosystem II 11 kDa protein-related	[more]

BLAST of Carg19113 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LR64\|PB27A_ARATH	5.2e-47	82.46	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
sp\|Q9ZVZ9\|PB27B_ARATH	9.8e-06	26.53	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of Carg19113 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1X2\|A0A1S3C1X2_CUCME	2.1e-53	70.41	photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0K1S2\|A0A0A0K1S2_CUCSA	1.0e-52	69.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1	[more]
tr\|A0A2C9VEZ3\|A0A2C9VEZ3_MANES	3.8e-47	85.34	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G098700 PE=3 SV=...	[more]
tr\|A0A1J3GIL5\|A0A1J3GIL5_NOCCA	5.0e-47	86.84	Photosystem II repair protein PSB27-H1, chloroplastic (Fragment) OS=Noccaea caer...	[more]
tr\|A0A1J3DSR2\|A0A1J3DSR2_NOCCA	5.0e-47	86.84	Photosystem II repair protein PSB27-H1, chloroplastic OS=Noccaea caerulescens OX...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010207	photosystem II assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR038450	PSII_Pbs27_sf
IPR025585	PSII_Pbs27

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19113-RA	Carg19113-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 63..164 e-value: 3.4E-33 score: 114.9
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	FAMILY NOT NAMED	coord: 1..168
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 35..164 score: 23.225
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	G3DSA:1.20.58.810		coord: 60..168 e-value: 5.3E-40 score: 137.9
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..168

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19113	Cla007741	Watermelon (97103) v1	carwmB0718
Carg19113	Csa7G047350	Cucumber (Chinese Long) v2	carcuB0739
Carg19113	MELO3C018748	Melon (DHL92) v3.5.1	carmeB0715
Carg19113	ClCG02G001140	Watermelon (Charleston Gray)	carwcgB0696
Carg19113	CSPI07G04480	Wild cucumber (PI 183967)	carcpiB0755
Carg19113	Cucsa.147810	Cucumber (Gy14) v1	carcgyB0810
Carg19113	CmaCh19G009790	Cucurbita maxima (Rimu)	carcmaB1008
Carg19113	CmaCh11G018680	Cucurbita maxima (Rimu)	carcmaB1006
Carg19113	CmoCh19G010120	Cucurbita moschata (Rifu)	carcmoB0981
Carg19113	CmoCh11G019450	Cucurbita moschata (Rifu)	carcmoB0979
Carg19113	Lsi11G015360	Bottle gourd (USVL1VR-Ls)	carlsiB659
Carg19113	Cp4.1LG15g07890	Cucurbita pepo (Zucchini)	carcpeB1013
Carg19113	Cp4.1LG04g03180	Cucurbita pepo (Zucchini)	carcpeB1015
Carg19113	CsGy7G004090	Cucumber (Gy14) v2	carcgybB0717
Carg19113	MELO3C018748.2	Melon (DHL92) v3.6.1	carmedB0728
Carg19113	CsaV3_7G004300	Cucumber (Chinese Long) v3	carcucB0758
Carg19113	Cla97C02G027560	Watermelon (97103) v2	carwmbB0752
Carg19113	Bhi05G001594	Wax gourd	carwgoB0847

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19113	Carg19227	Silver-seed gourd	carcarB590

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19113	Silver-seed gourd	carcarB035
Carg19113	Silver-seed gourd	carcarB176
Carg19113	Cucumber (Gy14) v1	carcgyB0809
Carg19113	Cucurbita maxima (Rimu)	carcmaB1007
Carg19113	Cucurbita maxima (Rimu)	carcmaB1010
Carg19113	Cucurbita moschata (Rifu)	carcmoB0980
Carg19113	Cucurbita moschata (Rifu)	carcmoB0983
Carg19113	Cucurbita pepo (Zucchini)	carcpeB1012
Carg19113	Cucurbita pepo (Zucchini)	carcpeB1016
Carg19113	Bottle gourd (USVL1VR-Ls)	carlsiB657
Carg19113	Watermelon (Charleston Gray)	carwcgB0695
Carg19113	Watermelon (97103) v1	carwmB0719
Carg19113	Watermelon (97103) v2	carwmbB0751
Carg19113	Wax gourd	carwgoB0849