Cla97C02G027560 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G027560
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	photosystem II repair protein PSB27-H1, chloroplastic
Location	Cla97Chr02 : 1277794 .. 1278303 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Homology

[Close]

BLAST of Cla97C02G027560 vs. NCBI nr
Match: XP_008455335.1 (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo])

HSP 1 Score: 300.1 bits (767), Expect = 4.9e-78
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cla97C02G027560 vs. NCBI nr
Match: XP_004136817.1 (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_7G047350 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 2.4e-77
Identity = 156/169 (92.31%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRR+FLSLTASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cla97C02G027560 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 140/172 (81.40%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKS---TISAAASTTIVRRRDFLSLTASVLAPSLVLFP 60
           MASPTLITP TSKSQ    PLKPKS                  FLSLTASVLAPS VLFP
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLFP 60

Query: 61  QSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKAL 120
            +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+L
Sbjct: 61  PAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSL 120

Query: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]

BLAST of Cla97C02G027560 vs. NCBI nr
Match: XP_023554625.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 2.6e-63
Identity = 140/173 (80.92%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKS----TISAAASTTIVRRRDFLSLTASVLAPSLVLF 60
           MASPTLITP TSKSQ    PLKPKS                   FLSLTASVLAPS VLF
Sbjct: 1   MASPTLITPSTSKSQPLIVPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60

Query: 61  PQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKA 120
           P +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAVAELRE+SNSWVAKYRKEK+
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]

BLAST of Cla97C02G027560 vs. NCBI nr
Match: XP_023529218.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.6 bits (636), Expect = 7.6e-63
Identity = 137/169 (81.07%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MAS TL+TPCTSKSQ    P KPKSTISAAA     RRR+ LSLTASVLA   VL P +P
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKSTISAAA-VHHPRRRELLSLTASVLAAPWVLLPPAP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           A A++DEEYVKDT+EVI KVRTTI MD+NDPNVA AVAELRE+SNSWVAKYRKEK+LLGR
Sbjct: 61  AQASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Sbjct: 121 ASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]

BLAST of Cla97C02G027560 vs. TrEMBL
Match: tr|A0A1S3C1X2|A0A1S3C1X2_CUCME (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.2e-78
Identity = 157/169 (92.90%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cla97C02G027560 vs. TrEMBL
Match: tr|A0A0A0K1S2|A0A0A0K1S2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.6e-77
Identity = 156/169 (92.31%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRR+FLSLTASVLAPS VLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           ALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRE+SN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Cla97C02G027560 vs. TrEMBL
Match: tr|A0A2I4HIC5|A0A2I4HIC5_9ROSI (photosystem II repair protein PSB27-H1, chloroplastic OS=Juglans regia OX=51240 GN=LOC109018206 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 130/174 (74.71%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPK--STISAAASTTI--VRRRDFLSLTASVLAPS-LVL 60
           MASPTLITP TSK  +   P+KPK  +TI+A  ST     RRR+FLSL  ++L+P+ L +
Sbjct: 1   MASPTLITP-TSKLTSQLSPIKPKFTTTITATNSTNAHQPRRREFLSLATTILSPAWLSV 60

Query: 61  FPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEK 120
               PALAASDEEYVK+T EVI KVRTTI MD+NDPNVA+AVA+LRETSNSWVAKYR+EK
Sbjct: 61  VSTRPALAASDEEYVKETEEVINKVRTTIQMDKNDPNVASAVADLRETSNSWVAKYRREK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
            LL R SFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 VLLARVSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 173

[Close]

BLAST of Cla97C02G027560 vs. TrEMBL
Match: tr|W9R838|W9R838_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022156 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.7e-56
Identity = 126/177 (71.19%), Postives = 140/177 (79.10%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAA--------ASTTIVRRRDFLSLTASVLAPS 60
           MASPTL+TP  +    P  P KPK T +A         A T++ RRR+FLSL A V    
Sbjct: 1   MASPTLLTP--TSQPKPLSPFKPKFTATALNANASANDAGTSMTRRREFLSLAAVVTLSP 60

Query: 61  LVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYR 120
             L P  PA+AA DEEYVK+T+EVI KVRTTI MD+NDPNVAAAV++LRETSNSWVAKYR
Sbjct: 61  AWLLPVRPAMAAEDEEYVKETAEVINKVRTTINMDKNDPNVAAAVSDLRETSNSWVAKYR 120

Query: 121 KEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           +EKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEE+DTAEKAL RGR
Sbjct: 121 REKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEVDTAEKALSRGR 175

[Close]

BLAST of Cla97C02G027560 vs. TrEMBL
Match: tr|K4CFX4|K4CFX4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54
Identity = 117/169 (69.23%), Postives = 139/169 (82.25%), Query Frame = 0


Query: 1   MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSP 60
           MASPTLITP TS  ++   P++ K   S   +T  +RRR+FLSL+A +L+PSL+L P + 
Sbjct: 30  MASPTLITPSTSTPKSLITPIRSKLITSVTTTTITLRRREFLSLSAGILSPSLLL-PATS 89

Query: 61  ALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGR 120
           A AA+DEEYVK+ SEVI KVR+T+ MD+ DPN+A +VAELRE SN WVAKYR+EKALLGR
Sbjct: 90  AFAATDEEYVKEASEVIQKVRSTLNMDKGDPNIADSVAELREASNYWVAKYRREKALLGR 149

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEKAL RGR
Sbjct: 150 ASFRDIYSALNAVSGHYVSFGPTTPIPAKRKVRILEEMDTAEKALKRGR 197

[Close]

BLAST of Cla97C02G027560 vs. Swiss-Prot
Match: sp|Q9LR64|PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.5e-49
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 38  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAA 97
           RRDFLSL  T+++L  S+     +P  AA DEEY+KDTS VI KVR+T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]

BLAST of Cla97C02G027560 vs. Swiss-Prot
Match: sp|Q9ZVZ9|PB27B_ARATH (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 23/98 (23.47%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 69  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  + +++     +    +E+   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of Cla97C02G027560 vs. TAIR10
Match: AT1G03600.1 (photosystem II family protein)

HSP 1 Score: 194.5 bits (493), Expect = 5.2e-50
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 38  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAA 97
           RRDFLSL  T+++L  S+     +P  AA DEEY+KDTS VI KVR+T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]

BLAST of Cla97C02G027560 vs. TAIR10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 23/98 (23.47%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 69  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  + +++     +    +E+   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:

BLAST of Cla97C02G027560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455335.1	4.9e-78	92.90	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo]	[more]
XP_004136817.1	2.4e-77	92.31	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativu...	[more]
XP_022952622.1	1.5e-63	81.40	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ...	[more]
XP_023554625.1	2.6e-63	80.92	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp...	[more]
XP_023529218.1	7.6e-63	81.07	photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp...	[more]

BLAST of Cla97C02G027560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1X2\|A0A1S3C1X2_CUCME	3.2e-78	92.90	photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0K1S2\|A0A0A0K1S2_CUCSA	1.6e-77	92.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1	[more]
tr\|A0A2I4HIC5\|A0A2I4HIC5_9ROSI	1.2e-56	74.71	photosystem II repair protein PSB27-H1, chloroplastic OS=Juglans regia OX=51240 ...	[more]
tr\|W9R838\|W9R838_9ROSA	2.7e-56	71.19	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022156 PE=3 SV=1	[more]
tr\|K4CFX4\|K4CFX4_SOLLC	1.9e-54	69.23	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]

BLAST of Cla97C02G027560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LR64\|PB27A_ARATH	9.5e-49	75.37	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
sp\|Q9ZVZ9\|PB27B_ARATH	1.9e-04	23.47	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]

BLAST of Cla97C02G027560 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03600.1	5.2e-50	75.37	photosystem II family protein	[more]
AT1G05385.1	1.0e-05	23.47	photosystem II 11 kDa protein-related	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010207	photosystem II assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR025585	PSII_Pbs27
IPR038450	PSII_Pbs27_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0009657	plastid organization
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0071484	cellular response to light intensity
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G027560.1	Cla97C02G027560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	G3DSA:1.20.58.810		coord: 62..169 e-value: 2.0E-38 score: 132.8
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 64..165 e-value: 1.2E-31 score: 109.9
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	FAMILY NOT NAMED	coord: 1..169
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 43..165 score: 24.029
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..169

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G027560	Cla007741	Watermelon (97103) v1	wmwmbB324
Cla97C02G027560	Csa7G047350	Cucumber (Chinese Long) v2	cuwmbB529
Cla97C02G027560	MELO3C018748	Melon (DHL92) v3.5.1	mewmbB178
Cla97C02G027560	ClCG02G001140	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G027560	CSPI07G04480	Wild cucumber (PI 183967)	cpiwmbB553
Cla97C02G027560	Cucsa.147810	Cucumber (Gy14) v1	cgywmbB248
Cla97C02G027560	CmaCh19G009790	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G027560	CmaCh11G018680	Cucurbita maxima (Rimu)	cmawmbB105
Cla97C02G027560	CmoCh11G019450	Cucurbita moschata (Rifu)	cmowmbB094
Cla97C02G027560	CmoCh19G010120	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G027560	Lsi11G015360	Bottle gourd (USVL1VR-Ls)	lsiwmbB086
Cla97C02G027560	CsGy7G004090	Cucumber (Gy14) v2	cgybwmbB502
Cla97C02G027560	MELO3C018748.2	Melon (DHL92) v3.6.1	medwmbB164
Cla97C02G027560	Carg19113	Silver-seed gourd	carwmbB0752
Cla97C02G027560	Carg19227	Silver-seed gourd	carwmbB0915
Cla97C02G027560	CsaV3_7G004300	Cucumber (Chinese Long) v3	cucwmbB549
Cla97C02G027560	Bhi05G001594	Wax gourd	wgowmbB251

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G027560	Watermelon (97103) v2	wmbwmbB090
Cla97C02G027560	Silver-seed gourd	carwmbB0027
Cla97C02G027560	Silver-seed gourd	carwmbB0348
Cla97C02G027560	Cucumber (Gy14) v2	cgybwmbB115
Cla97C02G027560	Cucumber (Gy14) v1	cgywmbB442
Cla97C02G027560	Cucurbita maxima (Rimu)	cmawmbB618
Cla97C02G027560	Cucurbita moschata (Rifu)	cmowmbB546
Cla97C02G027560	Cucurbita moschata (Rifu)	cmowmbB552
Cla97C02G027560	Cucurbita moschata (Rifu)	cmowmbB593
Cla97C02G027560	Wild cucumber (PI 183967)	cpiwmbB122
Cla97C02G027560	Cucumber (Chinese Long) v3	cucwmbB124
Cla97C02G027560	Cucumber (Chinese Long) v2	cuwmbB120
Cla97C02G027560	Bottle gourd (USVL1VR-Ls)	lsiwmbB053
Cla97C02G027560	Bottle gourd (USVL1VR-Ls)	lsiwmbB060
Cla97C02G027560	Melon (DHL92) v3.6.1	medwmbB089
Cla97C02G027560	Melon (DHL92) v3.5.1	mewmbB096
Cla97C02G027560	Watermelon (Charleston Gray)	wcgwmbB146
Cla97C02G027560	Watermelon (97103) v1	wmwmbB332
Cla97C02G027560	Wax gourd	wgowmbB365