CSPI07G04480 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G04480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionphotosystem II family protein
LocationChr7 : 3361816 .. 3362730 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTCCATCCCTCATCCATAAGTCCAACAAATAAGATAAGACGATAAGCACACGTGGCAATCACCCAATTCCTCCAATTTTTTTCTAACTAAACAATCCATCTTCACATTTCATTTCCCCTTCTCCTCTTCCAAAACTCCAATTTCCCCAAAATCATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCTCCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGAAAATTTATGTGAGGCTTTTTCATTCTTTTTCTCTTTGTATTTTTATTTATTTTTTTCTTCCCAAGTATTGGAGTTTAACGTTTATGGGTTATGTAAGTATAGAATTTGGGGATTCACAATTTGTGAATTTACAAGAGGAAAATATTCTAAATTTATCTAAGATTAATAGAGACCGGACTTTATGTCTTGATTAGTTGGATGGATTTAGTAAATTATGCATGAGATAATAATGTTACATGTTTTAGCTCAT

mRNA sequence

ATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCTCCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCTCCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA
Homology
[Close]
BLAST of CSPI07G04480 vs. Swiss-Prot
Match: PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.1e-47
Identity = 105/174 (60.34%), Postives = 128/174 (73.56%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSL--TASVLAPSFVL 60
           MAS +        +  P  P    SS+S  +  P    + RR+FLSL  T+++L  S   
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQF 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120
              +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SN WVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of CSPI07G04480 vs. Swiss-Prot
Match: PSB27_THEEB (Photosystem II lipoprotein Psb27 OS=Thermosynechococcus elongatus (strain BP-1) GN=psb27 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-12
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 1 

Query: 38  RREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV 97
           +R +  + A  L+ S +L   +         + +DT  +I  +R  I +  NDPN  AA 
Sbjct: 2   KRFWAMVCALFLSVSLLLTSCANVPTGLTGNFREDTLALISSLREAIALPENDPNKKAAQ 61

Query: 98  ADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEE 157
           A+ R+  N + A YR++ +L   +SF  M +ALN+++GHY S+ P  P+P K KAR+ +E
Sbjct: 62  AEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY-PNRPLPEKLKARLEQE 121

Query: 158 MDTAEKALLR 168
               E AL R
Sbjct: 122 FKQVELALDR 130

[Close]
BLAST of CSPI07G04480 vs. Swiss-Prot
Match: PSB27_SYNY3 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=psb27 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 1 

Query: 69  YVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGRASFRDMYS 128
           Y +DT  VI  +R  I + ++ PN        R   N ++++YR++    G  SF  M +
Sbjct: 35  YSQDTLTVIATLREAIDLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQT 94

Query: 129 ALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRG 169
           ALN+++G+Y S+G   PIP K K R+  E   AE+++ RG
Sbjct: 95  ALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAERSIERG 133

[Close]
BLAST of CSPI07G04480 vs. TrEMBL
Match: A0A0A0K1S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.3e-85
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CSPI07G04480 vs. TrEMBL
Match: A0A0S3SHI7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G095400 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 127/175 (72.57%), Postives = 146/175 (83.43%), Query Frame = 1 

Query: 1   MASPTLITPC-TSKSQSPFIPLKPKSSISAAVTTPTV-----RRREFLSLTASVLAPSFV 60
           MASPTLITP  T KS +P  P KP + +SA +T  T      RRREFLSLTAS+++    
Sbjct: 1   MASPTLITPTSTPKSLTPVKP-KPTTVVSATITPTTATATHPRRREFLSLTASLVSS--- 60

Query: 61  LFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE 120
           + P +PA+AASD+EYVK+T +VI KVRTTI++D+NDPNVA AVADLRESSN WVAKYR+E
Sbjct: 61  VVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRRE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]
BLAST of CSPI07G04480 vs. TrEMBL
Match: A0A0L9UMC1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g150800 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 127/175 (72.57%), Postives = 146/175 (83.43%), Query Frame = 1 

Query: 1   MASPTLITPC-TSKSQSPFIPLKPKSSISAAVTTPTV-----RRREFLSLTASVLAPSFV 60
           MASPTLITP  T KS +P  P KP + +SA +T  T      RRREFLSLTAS+++    
Sbjct: 1   MASPTLITPTSTPKSLTPVKP-KPTTVVSATITPTTATATHPRRREFLSLTASLVSS--- 60

Query: 61  LFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE 120
           + P +PA+AASD+EYVK+T +VI KVRTTI++D+NDPNVA AVADLRESSN WVAKYR+E
Sbjct: 61  VVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRRE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]
BLAST of CSPI07G04480 vs. TrEMBL
Match: A0A0V0H2G6_SOLCH (Putative photosystem II repair protein PSB27-H1, chloroplastic-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-56
Identity = 117/169 (69.23%), Postives = 141/169 (83.43%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITP TS  +S   P++ K   S   TT T+RRREFLSL+A +L+PS +L P + 
Sbjct: 1   MASPTLITPSTSTPKSLITPIRSKLISSVTTTTTTLRRREFLSLSAGILSPSLLL-PATS 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           A AA+D+EYVK+ +EVI KVR+T+ MD+ DPN+A +VA+LRE+SN+WVAKYR+EKALLGR
Sbjct: 61  AFAATDEEYVKEASEVIQKVRSTLNMDKGDPNIADSVAELREASNYWVAKYRREKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEKAL RGR
Sbjct: 121 ASFRDIYSALNAVSGHYVSFGPTTPIPAKRKVRILEEMDTAEKALQRGR 168

[Close]
BLAST of CSPI07G04480 vs. TrEMBL
Match: K4CFX4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-56
Identity = 117/169 (69.23%), Postives = 141/169 (83.43%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITP TS  +S   P++ K   S   TT T+RRREFLSL+A +L+PS +L P + 
Sbjct: 30  MASPTLITPSTSTPKSLITPIRSKLITSVTTTTITLRRREFLSLSAGILSPSLLL-PATS 89

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           A AA+D+EYVK+ +EVI KVR+T+ MD+ DPN+A +VA+LRE+SN+WVAKYR+EKALLGR
Sbjct: 90  AFAATDEEYVKEASEVIQKVRSTLNMDKGDPNIADSVAELREASNYWVAKYRREKALLGR 149

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEKAL RGR
Sbjct: 150 ASFRDIYSALNAVSGHYVSFGPTTPIPAKRKVRILEEMDTAEKALKRGR 197

[Close]
BLAST of CSPI07G04480 vs. TAIR10
Match: AT1G03600.1 (AT1G03600.1 photosystem II family protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.9e-48
Identity = 105/174 (60.34%), Postives = 128/174 (73.56%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSL--TASVLAPSFVL 60
           MAS +        +  P  P    SS+S  +  P    + RR+FLSL  T+++L  S   
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQF 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120
              +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SN WVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of CSPI07G04480 vs. TAIR10
Match: AT1G05385.1 (AT1G05385.1 photosystem II 11 kDa protein-related)

HSP 1 Score: 50.8 bits (120), Expect = 9.4e-07
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 1 

Query: 69  YVKDTNEVIGKVRTTITMDRNDPNVAAAVADL-RESSNFWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]
BLAST of CSPI07G04480 vs. NCBI nr
Match: gi|449438078|ref|XP_004136817.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 4.8e-85
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CSPI07G04480 vs. NCBI nr
Match: gi|659110645|ref|XP_008455335.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 2.6e-83
Identity = 165/169 (97.63%), Postives = 168/169 (99.41%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of CSPI07G04480 vs. NCBI nr
Match: gi|951072472|ref|XP_014491724.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 124/174 (71.26%), Postives = 143/174 (82.18%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTV-----RRREFLSLTASVLAPSFVL 60
           MASPTLITP ++      I  KP + +SA +T  T      RRREFLSLTAS+++    +
Sbjct: 1   MASPTLITPTSTPKSLTTIKPKPTTVVSATLTPTTATATHPRRREFLSLTASLVSS---V 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120
            P +PALAASD+EYVK+T +VI KVRTTIT+D+NDPNVA AVADLRE+SN WVAKYR+EK
Sbjct: 61  VPLAPALAASDEEYVKETEDVINKVRTTITLDKNDPNVATAVADLRETSNSWVAKYRREK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]
BLAST of CSPI07G04480 vs. NCBI nr
Match: gi|920700678|gb|KOM43903.1| (hypothetical protein LR48_Vigan05g150800 [Vigna angularis])

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 127/175 (72.57%), Postives = 146/175 (83.43%), Query Frame = 1 

Query: 1   MASPTLITPC-TSKSQSPFIPLKPKSSISAAVTTPTV-----RRREFLSLTASVLAPSFV 60
           MASPTLITP  T KS +P  P KP + +SA +T  T      RRREFLSLTAS+++    
Sbjct: 1   MASPTLITPTSTPKSLTPVKP-KPTTVVSATITPTTATATHPRRREFLSLTASLVSS--- 60

Query: 61  LFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE 120
           + P +PA+AASD+EYVK+T +VI KVRTTI++D+NDPNVA AVADLRESSN WVAKYR+E
Sbjct: 61  VVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRRE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]
BLAST of CSPI07G04480 vs. NCBI nr
Match: gi|723715182|ref|XP_004243333.2| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Solanum lycopersicum])

HSP 1 Score: 226.5 bits (576), Expect = 3.6e-56
Identity = 117/169 (69.23%), Postives = 141/169 (83.43%), Query Frame = 1 

Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITP TS  +S   P++ K   S   TT T+RRREFLSL+A +L+PS +L P + 
Sbjct: 1   MASPTLITPSTSTPKSLITPIRSKLITSVTTTTITLRRREFLSLSAGILSPSLLL-PATS 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           A AA+D+EYVK+ +EVI KVR+T+ MD+ DPN+A +VA+LRE+SN+WVAKYR+EKALLGR
Sbjct: 61  AFAATDEEYVKEASEVIQKVRSTLNMDKGDPNIADSVAELREASNYWVAKYRREKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEKAL RGR
Sbjct: 121 ASFRDIYSALNAVSGHYVSFGPTTPIPAKRKVRILEEMDTAEKALKRGR 168

The following BLAST results are available for this feature:
BLAST of CSPI07G04480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PB27A_ARATH5.1e-4760.34Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN... [more]
PSB27_THEEB3.1e-1234.62Photosystem II lipoprotein Psb27 OS=Thermosynechococcus elongatus (strain BP-1) ... [more]
PSB27_SYNY31.2e-0835.00Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)... [more]
BLAST of CSPI07G04480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1S2_CUCSA3.3e-8599.41Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047350 PE=3 SV=1[more]
A0A0S3SHI7_PHAAN1.1e-5672.57Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G095400 PE=... [more]
A0A0L9UMC1_PHAAN1.1e-5672.57Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g150800 PE=3 SV=1[more]
A0A0V0H2G6_SOLCH1.9e-5669.23Putative photosystem II repair protein PSB27-H1, chloroplastic-like OS=Solanum c... [more]
K4CFX4_SOLLC2.5e-5669.23Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1[more]
BLAST of CSPI07G04480 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03600.12.9e-4860.34 photosystem II family protein[more]
AT1G05385.19.4e-0727.55 photosystem II 11 kDa protein-related[more]
BLAST of CSPI07G04480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438078|ref|XP_004136817.1|4.8e-8599.41PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativu... [more]
gi|659110645|ref|XP_008455335.1|2.6e-8397.63PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo][more]
gi|951072472|ref|XP_014491724.1|1.6e-5671.26PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Vigna radiata ... [more]
gi|920700678|gb|KOM43903.1|1.6e-5672.57hypothetical protein LR48_Vigan05g150800 [Vigna angularis][more]
gi|723715182|ref|XP_004243333.2|3.6e-5669.23PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Solanum lycope... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025585PSII_Pbs27
Vocabulary: Biological Process
TermDefinition
GO:0010207photosystem II assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
biological_process GO:0009657 plastid organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006364 rRNA processing
biological_process GO:0044267 cellular protein metabolic process
biological_process GO:0071484 cellular response to light intensity
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005575 cellular_component
cellular_component GO:0009543 chloroplast thylakoid lumen
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G04480.1CSPI07G04480.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 43..165
score: 23
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 64..165
score: 6.7
NoneNo IPR availablePANTHERPTHR34041FAMILY NOT NAMEDcoord: 1..169
score: 9.9
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..169
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G04480Cla007741Watermelon (97103) v1cpiwmB614
CSPI07G04480Csa7G047350Cucumber (Chinese Long) v2cpicuB354
CSPI07G04480MELO3C018748Melon (DHL92) v3.5.1cpimeB538
CSPI07G04480ClCG02G001140Watermelon (Charleston Gray)cpiwcgB574
CSPI07G04480Lsi11G015360Bottle gourd (USVL1VR-Ls)cpilsiB505
CSPI07G04480MELO3C018748.2Melon (DHL92) v3.6.1cpimedB523
CSPI07G04480CsaV3_7G004300Cucumber (Chinese Long) v3cpicucB415
CSPI07G04480Cla97C02G027560Watermelon (97103) v2cpiwmbB553
CSPI07G04480Bhi05G001594Wax gourdcpiwgoB673
CSPI07G04480Cucsa.147810Cucumber (Gy14) v1cgycpiB220
CSPI07G04480CmaCh19G009790Cucurbita maxima (Rimu)cmacpiB533
CSPI07G04480CmaCh11G018680Cucurbita maxima (Rimu)cmacpiB144
CSPI07G04480CmoCh11G019450Cucurbita moschata (Rifu)cmocpiB131
CSPI07G04480CmoCh19G010120Cucurbita moschata (Rifu)cmocpiB524
CSPI07G04480Cp4.1LG04g03180Cucurbita pepo (Zucchini)cpecpiB692
CSPI07G04480Cp4.1LG15g07890Cucurbita pepo (Zucchini)cpecpiB257
CSPI07G04480CsGy7G004090Cucumber (Gy14) v2cgybcpiB332
CSPI07G04480Carg19227Silver-seed gourdcarcpiB0911
CSPI07G04480Carg19113Silver-seed gourdcarcpiB0755
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G04480Silver-seed gourdcarcpiB0034
CSPI07G04480Silver-seed gourdcarcpiB0176
CSPI07G04480Cucumber (Chinese Long) v3cpicucB409
CSPI07G04480Watermelon (97103) v2cpiwmbB539
CSPI07G04480Watermelon (97103) v2cpiwmbB547
CSPI07G04480Wax gourdcpiwgoB694
CSPI07G04480Wild cucumber (PI 183967)cpicpiB188
CSPI07G04480Cucumber (Gy14) v1cgycpiB029
CSPI07G04480Cucumber (Gy14) v1cgycpiB176
CSPI07G04480Cucurbita maxima (Rimu)cmacpiB429
CSPI07G04480Cucurbita maxima (Rimu)cmacpiB650
CSPI07G04480Cucurbita moschata (Rifu)cmocpiB419
CSPI07G04480Cucurbita moschata (Rifu)cmocpiB568
CSPI07G04480Cucurbita moschata (Rifu)cmocpiB643
CSPI07G04480Melon (DHL92) v3.5.1cpimeB575
CSPI07G04480Watermelon (Charleston Gray)cpiwcgB566
CSPI07G04480Watermelon (Charleston Gray)cpiwcgB569
CSPI07G04480Watermelon (97103) v1cpiwmB612
CSPI07G04480Watermelon (97103) v1cpiwmB616
CSPI07G04480Cucurbita pepo (Zucchini)cpecpiB301
CSPI07G04480Cucurbita pepo (Zucchini)cpecpiB768
CSPI07G04480Bottle gourd (USVL1VR-Ls)cpilsiB500
CSPI07G04480Bottle gourd (USVL1VR-Ls)cpilsiB516
CSPI07G04480Melon (DHL92) v3.6.1cpimedB560