CSPI07G04480.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G04480.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	photosystem II family protein
Location	Chr7 : 3361816 .. 3362730 (+)
Sequence length	510

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTCCATCCCTCATCCATAAGTCCAACAAATAAGATAAGACGATAAGCACACGTGGCAATCACCCAATTCCTCCAATTTTTTTCTAACTAAACAATCCATCTTCACATTTCATTTCCCCTTCTCCTCTTCCAAAACTCCAATTTCCCCAAAATCATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCTCCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGAAAATTTATGTGAGGCTTTTTCATTCTTTTTCTCTTTGTATTTTTATTTATTTTTTTCTTCCCAAGTATTGGAGTTTAACGTTTATGGGTTATGTAAGTATAGAATTTGGGGATTCACAATTTGTGAATTTACAAGAGGAAAATATTCTAAATTTATCTAAGATTAATAGAGACCGGACTTTATGTCTTGATTAGTTGGATGGATTTAGTAAATTATGCATGAGATAATAATGTTACATGTTTTAGCTCAT

mRNA sequence

ATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCTCCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCCTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAGAGCCCTTTCATACCTCTCAAACCCAAATCCTCCATTTCCGCTGCCGTAACAACCCCCACCGTCCGCCGCCGCGAGTTCCTTTCTTTGACCGCCTCTGTTCTAGCGCCGTCGTTCGTTCTGTTCCCTCAATCTCCGGCACTGGCGGCTTCGGACGACGAGTACGTGAAGGATACCAATGAGGTGATTGGTAAGGTGAGAACGACGATCACAATGGACAGAAATGACCCGAATGTGGCAGCAGCGGTGGCGGATCTTCGAGAAAGTTCGAATTTTTGGGTGGCTAAGTATAGGAAGGAGAAAGCTCTATTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAACGCTGTGTCGGGGCATTATATTAGCTTCGGACCGACTGCGCCGATACCGGCAAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Homology

[Close]

BLAST of CSPI07G04480.1 vs. Swiss-Prot
Match: PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.1e-47
Identity = 105/174 (60.34%), Postives = 128/174 (73.56%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSL--TASVLAPSFVL 60
           MAS +        +  P  P    SS+S  +  P    + RR+FLSL  T+++L  S   
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQF 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120
              +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SN WVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of CSPI07G04480.1 vs. Swiss-Prot
Match: PSB27_THEEB (Photosystem II lipoprotein Psb27 OS=Thermosynechococcus elongatus (strain BP-1) GN=psb27 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-12
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 1


Query: 38  RREFLSLTASVLAPSFVLFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAV 97
           +R +  + A  L+ S +L   +         + +DT  +I  +R  I +  NDPN  AA 
Sbjct: 2   KRFWAMVCALFLSVSLLLTSCANVPTGLTGNFREDTLALISSLREAIALPENDPNKKAAQ 61

Query: 98  ADLRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEE 157
           A+ R+  N + A YR++ +L   +SF  M +ALN+++GHY S+ P  P+P K KAR+ +E
Sbjct: 62  AEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY-PNRPLPEKLKARLEQE 121

Query: 158 MDTAEKALLR 168
               E AL R
Sbjct: 122 FKQVELALDR 130

[Close]

BLAST of CSPI07G04480.1 vs. Swiss-Prot
Match: PSB27_SYNY3 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=psb27 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 1


Query: 69  YVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGRASFRDMYS 128
           Y +DT  VI  +R  I + ++ PN        R   N ++++YR++    G  SF  M +
Sbjct: 35  YSQDTLTVIATLREAIDLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQT 94

Query: 129 ALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRG 169
           ALN+++G+Y S+G   PIP K K R+  E   AE+++ RG
Sbjct: 95  ALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAERSIERG 133

[Close]

BLAST of CSPI07G04480.1 vs. TrEMBL
Match: A0A0A0K1S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.3e-85
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CSPI07G04480.1 vs. TrEMBL
Match: A0A0S3SHI7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G095400 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 127/175 (72.57%), Postives = 146/175 (83.43%), Query Frame = 1


Query: 1   MASPTLITPC-TSKSQSPFIPLKPKSSISAAVTTPTV-----RRREFLSLTASVLAPSFV 60
           MASPTLITP  T KS +P  P KP + +SA +T  T      RRREFLSLTAS+++    
Sbjct: 1   MASPTLITPTSTPKSLTPVKP-KPTTVVSATITPTTATATHPRRREFLSLTASLVSS--- 60

Query: 61  LFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE 120
           + P +PA+AASD+EYVK+T +VI KVRTTI++D+NDPNVA AVADLRESSN WVAKYR+E
Sbjct: 61  VVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRRE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]

BLAST of CSPI07G04480.1 vs. TrEMBL
Match: A0A0L9UMC1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g150800 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 127/175 (72.57%), Postives = 146/175 (83.43%), Query Frame = 1


Query: 1   MASPTLITPC-TSKSQSPFIPLKPKSSISAAVTTPTV-----RRREFLSLTASVLAPSFV 60
           MASPTLITP  T KS +P  P KP + +SA +T  T      RRREFLSLTAS+++    
Sbjct: 1   MASPTLITPTSTPKSLTPVKP-KPTTVVSATITPTTATATHPRRREFLSLTASLVSS--- 60

Query: 61  LFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE 120
           + P +PA+AASD+EYVK+T +VI KVRTTI++D+NDPNVA AVADLRESSN WVAKYR+E
Sbjct: 61  VVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRRE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]

BLAST of CSPI07G04480.1 vs. TrEMBL
Match: A0A0V0H2G6_SOLCH (Putative photosystem II repair protein PSB27-H1, chloroplastic-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-56
Identity = 117/169 (69.23%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITP TS  +S   P++ K   S   TT T+RRREFLSL+A +L+PS +L P + 
Sbjct: 1   MASPTLITPSTSTPKSLITPIRSKLISSVTTTTTTLRRREFLSLSAGILSPSLLL-PATS 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           A AA+D+EYVK+ +EVI KVR+T+ MD+ DPN+A +VA+LRE+SN+WVAKYR+EKALLGR
Sbjct: 61  AFAATDEEYVKEASEVIQKVRSTLNMDKGDPNIADSVAELREASNYWVAKYRREKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEKAL RGR
Sbjct: 121 ASFRDIYSALNAVSGHYVSFGPTTPIPAKRKVRILEEMDTAEKALQRGR 168

[Close]

BLAST of CSPI07G04480.1 vs. TrEMBL
Match: K4CFX4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-56
Identity = 117/169 (69.23%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITP TS  +S   P++ K   S   TT T+RRREFLSL+A +L+PS +L P + 
Sbjct: 30  MASPTLITPSTSTPKSLITPIRSKLITSVTTTTITLRRREFLSLSAGILSPSLLL-PATS 89

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           A AA+D+EYVK+ +EVI KVR+T+ MD+ DPN+A +VA+LRE+SN+WVAKYR+EKALLGR
Sbjct: 90  AFAATDEEYVKEASEVIQKVRSTLNMDKGDPNIADSVAELREASNYWVAKYRREKALLGR 149

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEKAL RGR
Sbjct: 150 ASFRDIYSALNAVSGHYVSFGPTTPIPAKRKVRILEEMDTAEKALKRGR 197

[Close]

BLAST of CSPI07G04480.1 vs. TAIR10
Match: AT1G03600.1 (AT1G03600.1 photosystem II family protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.9e-48
Identity = 105/174 (60.34%), Postives = 128/174 (73.56%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPT---VRRREFLSL--TASVLAPSFVL 60
           MAS +        +  P  P    SS+S  +  P    + RR+FLSL  T+++L  S   
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPPLPPPRRNHLLRRDFLSLAATSTLLTQSIQF 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120
              +P  AA D+EY+KDT+ VI KVR+T++M + DPNVA AVA+LRE+SN WVAKYRKEK
Sbjct: 61  LAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Sbjct: 121 ALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of CSPI07G04480.1 vs. TAIR10
Match: AT1G05385.1 (AT1G05385.1 photosystem II 11 kDa protein-related)

HSP 1 Score: 50.8 bits (120), Expect = 9.4e-07
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 1


Query: 69  YVKDTNEVIGKVRTTITMDRNDPNVAAAVADL-RESSNFWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  +  D       AD  +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of CSPI07G04480.1 vs. NCBI nr
Match: gi|449438078|ref|XP_004136817.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 4.8e-85
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CSPI07G04480.1 vs. NCBI nr
Match: gi|659110645|ref|XP_008455335.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 2.6e-83
Identity = 165/169 (97.63%), Postives = 168/169 (99.41%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKS+ISAAVTTPTVRRR+FLSL+ASVLAPSFVLFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of CSPI07G04480.1 vs. NCBI nr
Match: gi|951072472|ref|XP_014491724.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 124/174 (71.26%), Postives = 143/174 (82.18%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTV-----RRREFLSLTASVLAPSFVL 60
           MASPTLITP ++      I  KP + +SA +T  T      RRREFLSLTAS+++    +
Sbjct: 1   MASPTLITPTSTPKSLTTIKPKPTTVVSATLTPTTATATHPRRREFLSLTASLVSS---V 60

Query: 61  FPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEK 120
            P +PALAASD+EYVK+T +VI KVRTTIT+D+NDPNVA AVADLRE+SN WVAKYR+EK
Sbjct: 61  VPLAPALAASDEEYVKETEDVINKVRTTITLDKNDPNVATAVADLRETSNSWVAKYRREK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]

BLAST of CSPI07G04480.1 vs. NCBI nr
Match: gi|920700678|gb|KOM43903.1| (hypothetical protein LR48_Vigan05g150800 [Vigna angularis])

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 127/175 (72.57%), Postives = 146/175 (83.43%), Query Frame = 1


Query: 1   MASPTLITPC-TSKSQSPFIPLKPKSSISAAVTTPTV-----RRREFLSLTASVLAPSFV 60
           MASPTLITP  T KS +P  P KP + +SA +T  T      RRREFLSLTAS+++    
Sbjct: 1   MASPTLITPTSTPKSLTPVKP-KPTTVVSATITPTTATATHPRRREFLSLTASLVSS--- 60

Query: 61  LFPQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKE 120
           + P +PA+AASD+EYVK+T +VI KVRTTI++D+NDPNVA AVADLRESSN WVAKYR+E
Sbjct: 61  VVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRRE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]

BLAST of CSPI07G04480.1 vs. NCBI nr
Match: gi|723715182|ref|XP_004243333.2| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Solanum lycopersicum])

HSP 1 Score: 226.5 bits (576), Expect = 3.6e-56
Identity = 117/169 (69.23%), Postives = 141/169 (83.43%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSSISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60
           MASPTLITP TS  +S   P++ K   S   TT T+RRREFLSL+A +L+PS +L P + 
Sbjct: 1   MASPTLITPSTSTPKSLITPIRSKLITSVTTTTITLRRREFLSLSAGILSPSLLL-PATS 60

Query: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120
           A AA+D+EYVK+ +EVI KVR+T+ MD+ DPN+A +VA+LRE+SN+WVAKYR+EKALLGR
Sbjct: 61  AFAATDEEYVKEASEVIQKVRSTLNMDKGDPNIADSVAELREASNYWVAKYRREKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEKAL RGR
Sbjct: 121 ASFRDIYSALNAVSGHYVSFGPTTPIPAKRKVRILEEMDTAEKALKRGR 168

The following BLAST results are available for this feature:

BLAST of CSPI07G04480.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PB27A_ARATH	5.1e-47	60.34	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN...	[more]
PSB27_THEEB	3.1e-12	34.62	Photosystem II lipoprotein Psb27 OS=Thermosynechococcus elongatus (strain BP-1) ...	[more]
PSB27_SYNY3	1.2e-08	35.00	Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]

BLAST of CSPI07G04480.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1S2_CUCSA	3.3e-85	99.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047350 PE=3 SV=1	[more]
A0A0S3SHI7_PHAAN	1.1e-56	72.57	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G095400 PE=...	[more]
A0A0L9UMC1_PHAAN	1.1e-56	72.57	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g150800 PE=3 SV=1	[more]
A0A0V0H2G6_SOLCH	1.9e-56	69.23	Putative photosystem II repair protein PSB27-H1, chloroplastic-like OS=Solanum c...	[more]
K4CFX4_SOLLC	2.5e-56	69.23	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]

BLAST of CSPI07G04480.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03600.1	2.9e-48	60.34	photosystem II family protein	[more]
AT1G05385.1	9.4e-07	27.55	photosystem II 11 kDa protein-related	[more]

BLAST of CSPI07G04480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438078\|ref\|XP_004136817.1\|	4.8e-85	99.41	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativu...	[more]
gi\|659110645\|ref\|XP_008455335.1\|	2.6e-83	97.63	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo]	[more]
gi\|951072472\|ref\|XP_014491724.1\|	1.6e-56	71.26	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Vigna radiata ...	[more]
gi\|920700678\|gb\|KOM43903.1\|	1.6e-56	72.57	hypothetical protein LR48_Vigan05g150800 [Vigna angularis]	[more]
gi\|723715182\|ref\|XP_004243333.2\|	3.6e-56	69.23	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Solanum lycope...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025585	PSII_Pbs27

Vocabulary: **Biological Process**
Term	Definition
GO:0010207	photosystem II assembly

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0009657	plastid organization
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G04480	CSPI07G04480	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G04480.1	CSPI07G04480.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G04480.1.utr5p1	CSPI07G04480.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G04480.1.cds1	CSPI07G04480.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G04480.1.utr3p1	CSPI07G04480.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 43..165 score: 23
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 64..165 score: 6.7
None	No IPR available	PANTHER	PTHR34041	FAMILY NOT NAMED	coord: 1..169 score: 9.9
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..169 score: 9.9