Carg19227 (gene) Silver-seed gourd

Overview
NameCarg19227
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPhotosystem II lipoprotein Psb27
LocationCucurbita_argyrosperma_scaffold_099 : 350791 .. 351312 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

mRNA sequence

ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCTTCCCCGACACTGATAACCCCATCTACTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCTCCATTACCGCCGCTGCAACAACCACCACCACCCACCATTACTCCCGCCGCCGCGAGTTCCTGTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGTTCTGTTCCCTCCAGCTCCGGCACTAGCGTCGTCTGACGAGGAGTACGTGAAGGACACAACCGAGGTGATAGGAAAGGTGAGAACGACGATCACCATGGATAAAAACGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCCAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGTCGCTGTTGGGACGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCCGGACATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCCAAGAGGAAGGCCAGAATCTTGGAAGAGATGGCCACCGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLITPSTSKSQPLIIPLKPKSSITAAATTTTTHHYSRRREFLSLTASVLAPSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Homology
[Close]
BLAST of Carg19227 vs. NCBI nr
Match: XP_023554625.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.6 bits (727), Expect = 2.2e-73
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60
           MASPTLITPSTSKSQPLI+PLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF
Sbjct: 1   MASPTLITPSTSKSQPLIVPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 173

[Close]
BLAST of Carg19227 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 280.8 bits (717), Expect = 3.1e-72
Identity = 172/173 (99.42%), Postives = 172/173 (99.42%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60
           MASPTLITPSTSKSQPLIIPLKPKS XXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF
Sbjct: 1   MASPTLITPSTSKSQPLIIPLKPKS-XXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of Carg19227 vs. NCBI nr
Match: XP_008455335.1 (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 139/173 (80.35%), Postives = 147/173 (84.97%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS                   FLSL+ASVLAPS+VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKS----TISAAVTTPTVRRRDFLSLSASVLAPSFVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSNSWVAKYRKEK+
Sbjct: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of Carg19227 vs. NCBI nr
Match: XP_004136817.1 (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus] >KGN43600.1 hypothetical protein Csa_7G047350 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 139/173 (80.35%), Postives = 146/173 (84.39%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS                   FLSLTASVLAPS+VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKS----TISAAVTTPTVRRREFLSLTASVLAPSFVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+
Sbjct: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of Carg19227 vs. NCBI nr
Match: XP_022930794.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 137/173 (79.19%), Postives = 140/173 (80.92%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60
           MAS TL+TP TSKSQPLIIP KPKS                    LSLTASVLA  WVL 
Sbjct: 1   MASRTLLTPCTSKSQPLIIPPKPKS-----TISAAAIHHPRRRELLSLTASVLAAPWVLL 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           PPAPA AS+DEEYVKDT EVI KVRTTI MDKNDPNVA AVAELRESSNSWVAKYRKEKS
Sbjct: 61  PPAPAQASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKS 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]
BLAST of Carg19227 vs. TAIR10
Match: AT1G03600.1 (photosystem II family protein)

HSP 1 Score: 184.5 bits (467), Expect = 5.6e-47
Identity = 108/180 (60.00%), Postives = 126/180 (70.00%), Query Frame = 0 

Query: 2   ASPTLITPSTSKSQPLII------PLKPKSXXXXXXXXXXXXXXXXXXXFLSL--TASVL 61
           A+ TL+ P+    +P II      PL P                     FLSL  T+++L
Sbjct: 6   ATATLLKPNLPPHKPTIIASSVSPPLPP-----------PRRNHLLRRDFLSLAATSTLL 65

Query: 62  APSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVA 121
             S     PAP  A+ DEEY+KDT+ VI KVR+T++M K DPNVA AVAELRE+SNSWVA
Sbjct: 66  TQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVA 125

Query: 122 KYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           KYRKEK+LLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 126 KYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of Carg19227 vs. TAIR10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related)

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-06
Identity = 30/115 (26.09%), Postives = 61/115 (53.04%), Query Frame = 0 

Query: 59  LFPPAPALASSDE---EYVKDTTEVIGKVRTTITMD-KNDPNVAAAVAELRESSNSWVAK 118
           LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ 
Sbjct: 85  LFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSN 144

Query: 119 YRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKAL 170
           +R +K++ G  S+ ++ + + A++  Y   GP+AP+P + K  IL+++  AE+ L
Sbjct: 145 WRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]
BLAST of Carg19227 vs. Swiss-Prot
Match: sp|Q9LR64|PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-45
Identity = 108/180 (60.00%), Postives = 126/180 (70.00%), Query Frame = 0 

Query: 2   ASPTLITPSTSKSQPLII------PLKPKSXXXXXXXXXXXXXXXXXXXFLSL--TASVL 61
           A+ TL+ P+    +P II      PL P                     FLSL  T+++L
Sbjct: 6   ATATLLKPNLPPHKPTIIASSVSPPLPP-----------PRRNHLLRRDFLSLAATSTLL 65

Query: 62  APSWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVA 121
             S     PAP  A+ DEEY+KDT+ VI KVR+T++M K DPNVA AVAELRE+SNSWVA
Sbjct: 66  TQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVA 125

Query: 122 KYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           KYRKEK+LLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM TAEKAL RGR
Sbjct: 126 KYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of Carg19227 vs. Swiss-Prot
Match: sp|Q9ZVZ9|PB27B_ARATH (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 30/115 (26.09%), Postives = 61/115 (53.04%), Query Frame = 0 

Query: 59  LFPPAPALASSDE---EYVKDTTEVIGKVRTTITMD-KNDPNVAAAVAELRESSNSWVAK 118
           LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ 
Sbjct: 85  LFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSN 144

Query: 119 YRKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKAL 170
           +R +K++ G  S+ ++ + + A++  Y   GP+AP+P + K  IL+++  AE+ L
Sbjct: 145 WRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]
BLAST of Carg19227 vs. TrEMBL
Match: tr|A0A1S3C1X2|A0A1S3C1X2_CUCME (photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495525 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.0e-63
Identity = 139/173 (80.35%), Postives = 147/173 (84.97%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS                   FLSL+ASVLAPS+VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKS----TISAAVTTPTVRRRDFLSLSASVLAPSFVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSNSWVAKYRKEK+
Sbjct: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of Carg19227 vs. TrEMBL
Match: tr|A0A0A0K1S2|A0A0A0K1S2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.8e-63
Identity = 139/173 (80.35%), Postives = 146/173 (84.39%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVLF 60
           MASPTLITP TSKSQ   IPLKPKS                   FLSLTASVLAPS+VLF
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKS----TISAAVTTPTVRRREFLSLTASVLAPSFVLF 60

Query: 61  PPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKS 120
           P +PALA+SD+EYVKDT EVIGKVRTTITMD+NDPNVAAAVA+LRESSN WVAKYRKEK+
Sbjct: 61  PQSPALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKA 120

Query: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of Carg19227 vs. TrEMBL
Match: tr|A0A2I4HIC5|A0A2I4HIC5_9ROSI (photosystem II repair protein PSB27-H1, chloroplastic OS=Juglans regia OX=51240 GN=LOC109018206 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.4e-52
Identity = 120/174 (68.97%), Postives = 134/174 (77.01%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWV-L 60
           MASPTLITP TSK    + P+KPK                    FLSL  ++L+P+W+ +
Sbjct: 1   MASPTLITP-TSKLTSQLSPIKPKFTTTITATNSTNAHQPRRREFLSLATTILSPAWLSV 60

Query: 61  FPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
               PALA+SDEEYVK+T EVI KVRTTI MDKNDPNVA+AVA+LRE+SNSWVAKYR+EK
Sbjct: 61  VSTRPALAASDEEYVKETEEVINKVRTTIQMDKNDPNVASAVADLRETSNSWVAKYRREK 120

Query: 121 SLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
            LL R SFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Sbjct: 121 VLLARVSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 173

[Close]
BLAST of Carg19227 vs. TrEMBL
Match: tr|W9R838|W9R838_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022156 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.0e-50
Identity = 122/178 (68.54%), Postives = 138/178 (77.53%), Query Frame = 0 

Query: 1   MASPTLITPSTSKSQPLIIPLKPK----SXXXXXXXXXXXXXXXXXXXFLSLTASV-LAP 60
           MASPTL+TP TS+ +PL  P KPK    +                   FLSL A V L+P
Sbjct: 1   MASPTLLTP-TSQPKPL-SPFKPKFTATALNANASANDAGTSMTRRREFLSLAAVVTLSP 60

Query: 61  SWVLFPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKY 120
           +W+L P  PA+A+ DEEYVK+T EVI KVRTTI MDKNDPNVAAAV++LRE+SNSWVAKY
Sbjct: 61  AWLL-PVRPAMAAEDEEYVKETAEVINKVRTTINMDKNDPNVAAAVSDLRETSNSWVAKY 120

Query: 121 RKEKSLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           R+EK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEE+ TAEKAL RGR
Sbjct: 121 RREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEVDTAEKALSRGR 175

[Close]
BLAST of Carg19227 vs. TrEMBL
Match: tr|A0A1S3TD87|A0A1S3TD87_VIGRR (photosystem II repair protein PSB27-H1, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106754237 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.8e-50
Identity = 134/174 (77.01%), Postives = 148/174 (85.06%), Query Frame = 0 

Query: 1   MASPTLITP-STSKSQPLIIPLKPKSXXXXXXXXXXXXXXXXXXXFLSLTASVLAPSWVL 60
           MASPTLITP ST KS   I P     XXXXXXXXXXXXXXX    FLSLTAS+++    +
Sbjct: 1   MASPTLITPTSTPKSLTTIKPKPTXXXXXXXXXXXXXXXXXRRREFLSLTASLVSS---V 60

Query: 61  FPPAPALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEK 120
            P APALA+SDEEYVK+T +VI KVRTTIT+DKNDPNVA AVA+LRE+SNSWVAKYR+EK
Sbjct: 61  VPLAPALAASDEEYVKETEDVINKVRTTITLDKNDPNVATAVADLRETSNSWVAKYRREK 120

Query: 121 SLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 174
           +LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+ TAEKALLRGR
Sbjct: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

The following BLAST results are available for this feature:
BLAST of Carg19227 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023554625.12.2e-7399.42photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp... [more]
XP_022952622.13.1e-7299.42photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ... [more]
XP_008455335.11.6e-6380.35PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo][more]
XP_004136817.12.7e-6380.35PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativu... [more]
XP_022930794.11.1e-6179.19photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata][more]
BLAST of Carg19227 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03600.15.6e-4760.00photosystem II family protein[more]
AT1G05385.16.2e-0626.09photosystem II 11 kDa protein-related[more]
BLAST of Carg19227 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LR64|PB27A_ARATH1.0e-4560.00Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX... [more]
sp|Q9ZVZ9|PB27B_ARATH1.1e-0426.09Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid... [more]
BLAST of Carg19227 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C1X2|A0A1S3C1X2_CUCME1.0e-6380.35photosystem II repair protein PSB27-H1, chloroplastic OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0K1S2|A0A0A0K1S2_CUCSA1.8e-6380.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1[more]
tr|A0A2I4HIC5|A0A2I4HIC5_9ROSI1.4e-5268.97photosystem II repair protein PSB27-H1, chloroplastic OS=Juglans regia OX=51240 ... [more]
tr|W9R838|W9R838_9ROSA1.0e-5068.54Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022156 PE=3 SV=1[more]
tr|A0A1S3TD87|A0A1S3TD87_VIGRR3.8e-5077.01photosystem II repair protein PSB27-H1, chloroplastic OS=Vigna radiata var. radi... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0010207photosystem II assembly
Vocabulary: INTERPRO
TermDefinition
IPR038450PSII_Pbs27_sf
IPR025585PSII_Pbs27
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19227-RACarg19227-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 39..169
e-value: 1.5E-32
score: 112.8
IPR025585Photosystem II Pbs27PANTHERPTHR34041FAMILY NOT NAMEDcoord: 1..173
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 47..169
score: 23.929
IPR038450Photosystem II Pbs27 superfamilyGENE3DG3DSA:1.20.58.810coord: 66..173
e-value: 1.2E-38
score: 133.5
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..173

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19227Cla007741Watermelon (97103) v1carwmB0880
Carg19227Csa7G047350Cucumber (Chinese Long) v2carcuB0891
Carg19227MELO3C018748Melon (DHL92) v3.5.1carmeB0865
Carg19227ClCG02G001140Watermelon (Charleston Gray)carwcgB0851
Carg19227CSPI07G04480Wild cucumber (PI 183967)carcpiB0911
Carg19227Cucsa.147810Cucumber (Gy14) v1carcgyB0997
Carg19227CmaCh19G009790Cucurbita maxima (Rimu)carcmaB1214
Carg19227CmaCh11G018680Cucurbita maxima (Rimu)carcmaB1211
Carg19227CmoCh11G019450Cucurbita moschata (Rifu)carcmoB1179
Carg19227CmoCh19G010120Cucurbita moschata (Rifu)carcmoB1183
Carg19227Lsi11G015360Bottle gourd (USVL1VR-Ls)carlsiB795
Carg19227Cp4.1LG15g07890Cucurbita pepo (Zucchini)carcpeB1220
Carg19227CsGy7G004090Cucumber (Gy14) v2carcgybB0864
Carg19227MELO3C018748.2Melon (DHL92) v3.6.1carmedB0874
Carg19227CsaV3_7G004300Cucumber (Chinese Long) v3carcucB0915
Carg19227Cla97C02G027560Watermelon (97103) v2carwmbB0915
Carg19227Bhi05G001594Wax gourdcarwgoB1021
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19227Carg19113Silver-seed gourdcarcarB590
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19227Silver-seed gourdcarcarB036
Carg19227Silver-seed gourdcarcarB178
Carg19227Silver-seed gourdcarcarB364
Carg19227Cucurbita maxima (Rimu)carcmaB1213
Carg19227Cucurbita maxima (Rimu)carcmaB1216
Carg19227Cucurbita moschata (Rifu)carcmoB1181
Carg19227Cucurbita moschata (Rifu)carcmoB1182
Carg19227Cucurbita moschata (Rifu)carcmoB1184
Carg19227Cucurbita moschata (Rifu)carcmoB1185
Carg19227Cucurbita pepo (Zucchini)carcpeB1218
Carg19227Cucurbita pepo (Zucchini)carcpeB1222
Carg19227Cucurbita pepo (Zucchini)carcpeB1223
Carg19227Cucurbita pepo (Zucchini)carcpeB1225
Carg19227Bottle gourd (USVL1VR-Ls)carlsiB794
Carg19227Watermelon (Charleston Gray)carwcgB0850
Carg19227Watermelon (97103) v1carwmB0882
Carg19227Watermelon (97103) v2carwmbB0912
Carg19227Watermelon (97103) v2carwmbB0913
Carg19227Wax gourdcarwgoB1025