Lsi11G015360 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G015360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Photosystem 2 family protein
Location	chr11 : 23698892 .. 23699401 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCCAACACTCATAACTCCCTGTACTTCCAAATCTCAGAGCCCCTTCATCCCCCTCAAACCCAAATCCACCATTTCCGCCGCCGCAACAACCACCACTGTCCGCCGCCGCGAGTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGCTCTGTTCCCTCAATCGCCGGCACTGGCGTCTTCGGACGACGAGTACGTGAAGGACACAAGCGAGGTGATAGGGAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCAAATGTGGCAGCGGCGGTGGCGGAGCTTCGAGAAAGTTCTAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGTCCGACAGCGCCGATTCCAGCGAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

ATGGCCTCTCCAACACTCATAACTCCCTGTACTTCCAAATCTCAGAGCCCCTTCATCCCCCTCAAACCCAAATCCACCATTTCCGCCGCCGCAACAACCACCACTGTCCGCCGCCGCGAGTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGCTCTGTTCCCTCAATCGCCGGCACTGGCGTCTTCGGACGACGAGTACGTGAAGGACACAAGCGAGGTGATAGGGAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCAAATGTGGCAGCGGCGGTGGCGGAGCTTCGAGAAAGTTCTAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGTCCGACAGCGCCGATTCCAGCGAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Coding sequence (CDS)

ATGGCCTCTCCAACACTCATAACTCCCTGTACTTCCAAATCTCAGAGCCCCTTCATCCCCCTCAAACCCAAATCCACCATTTCCGCCGCCGCAACAACCACCACTGTCCGCCGCCGCGAGTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGCTCTGTTCCCTCAATCGCCGGCACTGGCGTCTTCGGACGACGAGTACGTGAAGGACACAAGCGAGGTGATAGGGAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCAAATGTGGCAGCGGCGGTGGCGGAGCTTCGAGAAAGTTCTAATTCTTGGGTGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGTCCGACAGCGCCGATTCCAGCGAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

Protein sequence

MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Homology

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BLAST of Lsi11G015360 vs. Swiss-Prot
Match: PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.3e-47
Identity = 98/134 (73.13%), Postives = 115/134 (85.82%), Query Frame = 1


Query: 38  RREFLSL--TASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAA 97
           RR+FLSL  T+++L  S      +P  A+ D+EY+KDTS VI KVR+T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]

BLAST of Lsi11G015360 vs. Swiss-Prot
Match: PSB27_THEEB (Photosystem II lipoprotein Psb27 OS=Thermosynechococcus elongatus (strain BP-1) GN=psb27 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 1


Query: 42  LSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELR 101
           L L+ S+L  S A  P           + +DT  +I  +R  I +  NDPN  AA AE R
Sbjct: 11  LFLSVSLLLTSCANVP-----TGLTGNFREDTLALISSLREAIALPENDPNKKAAQAEAR 70

Query: 102 ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTA 161
           +  N + A YR++ +L   +SF  M +ALN+++GHY S+ P  P+P K KAR+ +E    
Sbjct: 71  KKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY-PNRPLPEKLKARLEQEFKQV 130

Query: 162 EKALLR 168
           E AL R
Sbjct: 131 ELALDR 130

[Close]

BLAST of Lsi11G015360 vs. Swiss-Prot
Match: PSB27_SYNY3 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=psb27 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 1


Query: 69  YVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYS 128
           Y +DT  VI  +R  I + ++ PN        R   N ++++YR++    G  SF  M +
Sbjct: 35  YSQDTLTVIATLREAIDLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQT 94

Query: 129 ALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRG 169
           ALN+++G+Y S+G   PIP K K R+  E   AE+++ RG
Sbjct: 95  ALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAERSIERG 133

[Close]

BLAST of Lsi11G015360 vs. TrEMBL
Match: A0A0A0K1S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 5.4e-80
Identity = 161/169 (95.27%), Postives = 165/169 (97.63%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAA TT TVRRREFLSLTASVLAPS+ LFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGR 120
           ALA+SDDEYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Lsi11G015360 vs. TrEMBL
Match: I1LUF0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G202500 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 129/178 (72.47%), Postives = 144/178 (80.90%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTV---------RRREFLSLTASVLAP 60
           MASPTLITP + KS +P  P KP +TI+A  T  T          RRREFLS+   + A 
Sbjct: 1   MASPTLITPKSVKSLTPIKP-KPTTTIAATLTPPTTTSTAAATHPRRREFLSI---ITAT 60

Query: 61  SWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKY 120
           +W L P SPALASSD+EY+K+T EVI KVRTTI MD+NDPNVA AVAELRE+SNSWVAKY
Sbjct: 61  TW-LVPLSPALASSDEEYMKETEEVINKVRTTIVMDKNDPNVATAVAELRETSNSWVAKY 120

Query: 121 RKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           R+EKALLGR SFRDMYSALNAVSGHYISFGPTAPIPAKR+ARILEE+DTAEKALLRGR
Sbjct: 121 RREKALLGRVSFRDMYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKALLRGR 173

[Close]

BLAST of Lsi11G015360 vs. TrEMBL
Match: I1M3V1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G299200 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-56
Identity = 128/174 (73.56%), Postives = 142/174 (81.61%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAAT-----TTTVRRREFLSLTASVLAPSWAL 60
           MASPTLITP + KS SP  P    +T + AAT     TT  RRRE LS    ++  +W L
Sbjct: 1   MASPTLITPKSVKSLSPIKPKATTTTTTIAATLTPSTTTHPRRRELLS----IITTTW-L 60

Query: 61  FPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEK 120
            P SPALASSD+EYVK+T EVI KVRTTI MD+NDPNVA AVAELRE+SNSWVAKYR+EK
Sbjct: 61  LPLSPALASSDEEYVKETEEVINKVRTTIVMDKNDPNVATAVAELRETSNSWVAKYRREK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLGRASFRD+YSALNAVSGHYISFGPTAPIPAKR+ARILEE+DTAEKALLRGR
Sbjct: 121 ALLGRASFRDIYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKALLRGR 169

[Close]

BLAST of Lsi11G015360 vs. TrEMBL
Match: A0A0L9UMC1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g150800 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-56
Identity = 127/175 (72.57%), Postives = 148/175 (84.57%), Query Frame = 1


Query: 1   MASPTLITPC-TSKSQSPFIPLKPKSTISAAATTTTV-----RRREFLSLTASVLAPSWA 60
           MASPTLITP  T KS +P  P KP + +SA  T TT      RRREFLSLTAS+++   +
Sbjct: 1   MASPTLITPTSTPKSLTPVKP-KPTTVVSATITPTTATATHPRRREFLSLTASLVS---S 60

Query: 61  LFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKE 120
           + P +PA+A+SD+EYVK+T +VI KVRTTI++D+NDPNVA AVA+LRESSNSWVAKYR+E
Sbjct: 61  VVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRRE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]

BLAST of Lsi11G015360 vs. TrEMBL
Match: A0A0S3SHI7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G095400 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-56
Identity = 127/175 (72.57%), Postives = 148/175 (84.57%), Query Frame = 1


Query: 1   MASPTLITPC-TSKSQSPFIPLKPKSTISAAATTTTV-----RRREFLSLTASVLAPSWA 60
           MASPTLITP  T KS +P  P KP + +SA  T TT      RRREFLSLTAS+++   +
Sbjct: 1   MASPTLITPTSTPKSLTPVKP-KPTTVVSATITPTTATATHPRRREFLSLTASLVS---S 60

Query: 61  LFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKE 120
           + P +PA+A+SD+EYVK+T +VI KVRTTI++D+NDPNVA AVA+LRESSNSWVAKYR+E
Sbjct: 61  VVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRRE 120

Query: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 KALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]

BLAST of Lsi11G015360 vs. TAIR10
Match: AT1G03600.1 (AT1G03600.1 photosystem II family protein)

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-48
Identity = 98/134 (73.13%), Postives = 115/134 (85.82%), Query Frame = 1


Query: 38  RREFLSL--TASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAA 97
           RR+FLSL  T+++L  S      +P  A+ D+EY+KDTS VI KVR+T++M + DPNVA 
Sbjct: 41  RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVAD 100

Query: 98  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARIL 157
           AVAELRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARIL
Sbjct: 101 AVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARIL 160

Query: 158 EEMDTAEKALLRGR 170
           EEM+TAEKAL RGR
Sbjct: 161 EEMETAEKALTRGR 174

[Close]

BLAST of Lsi11G015360 vs. TAIR10
Match: AT1G05385.1 (AT1G05385.1 photosystem II 11 kDa protein-related)

HSP 1 Score: 48.1 bits (113), Expect = 6.1e-06
Identity = 26/98 (26.53%), Postives = 55/98 (56.12%), Query Frame = 1


Query: 69  YVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL-RESSNSWVAKYRKEKALLGRASFRDMY 128
           Y+K   EV+  +R ++  +  D       A+  +ES   +++ +R +K + G  S+ ++ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELE 161

Query: 129 SALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL 166
           + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Sbjct: 162 NVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of Lsi11G015360 vs. NCBI nr
Match: gi|449438078|ref|XP_004136817.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 7.8e-80
Identity = 161/169 (95.27%), Postives = 165/169 (97.63%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAA TT TVRRREFLSLTASVLAPS+ LFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSP 60

Query: 61  ALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGR 120
           ALA+SDDEYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRESSN WVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Lsi11G015360 vs. NCBI nr
Match: gi|659110645|ref|XP_008455335.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79
Identity = 160/169 (94.67%), Postives = 166/169 (98.22%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSP 60
           MASPTLITPCTSKSQSPFIPLKPKSTISAA TT TVRRR+FLSL+ASVLAPS+ LFPQSP
Sbjct: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRRDFLSLSASVLAPSFVLFPQSP 60

Query: 61  ALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGR 120
           ALA+SDDEYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+LRESSNSWVAKYRKEKALLGR
Sbjct: 61  ALAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNSWVAKYRKEKALLGR 120

Query: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Sbjct: 121 ASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]

BLAST of Lsi11G015360 vs. NCBI nr
Match: gi|747092095|ref|XP_011093799.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Sesamum indicum])

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 128/176 (72.73%), Postives = 145/176 (82.39%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQS-PFIPLKPKSTISAAATTTTVR------RREFLSLTASVLAPSW 60
           MASPTLITP T+ + S PFIP++ K T++ A +TT         RR+FLSL+A  L+   
Sbjct: 1   MASPTLITPTTTTTTSKPFIPVRSKVTVATATSTTASAVSLLPSRRDFLSLSALTLS--- 60

Query: 61  ALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRK 120
            L P S ALA+SD+EYVK+T EVI KVRTTIT+D+NDPNVA AVAELRE+SNSWVAKYR+
Sbjct: 61  -LSPVSSALAASDEEYVKETEEVINKVRTTITLDKNDPNVATAVAELRETSNSWVAKYRR 120

Query: 121 EKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           EK LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRK RILEEMDTAEKALLRGR
Sbjct: 121 EKTLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKQRILEEMDTAEKALLRGR 172

[Close]

BLAST of Lsi11G015360 vs. NCBI nr
Match: gi|951072472|ref|XP_014491724.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 227.3 bits (578), Expect = 2.1e-56
Identity = 124/174 (71.26%), Postives = 145/174 (83.33%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTV-----RRREFLSLTASVLAPSWAL 60
           MASPTLITP ++      I  KP + +SA  T TT      RRREFLSLTAS+++   ++
Sbjct: 1   MASPTLITPTSTPKSLTTIKPKPTTVVSATLTPTTATATHPRRREFLSLTASLVS---SV 60

Query: 61  FPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEK 120
            P +PALA+SD+EYVK+T +VI KVRTTIT+D+NDPNVA AVA+LRE+SNSWVAKYR+EK
Sbjct: 61  VPLAPALAASDEEYVKETEDVINKVRTTITLDKNDPNVATAVADLRETSNSWVAKYRREK 120

Query: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKR+ RILEE+DTAEKALLRGR
Sbjct: 121 ALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171

[Close]

BLAST of Lsi11G015360 vs. NCBI nr
Match: gi|356543813|ref|XP_003540354.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic-like [Glycine max])

HSP 1 Score: 227.3 bits (578), Expect = 2.1e-56
Identity = 129/178 (72.47%), Postives = 144/178 (80.90%), Query Frame = 1


Query: 1   MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTV---------RRREFLSLTASVLAP 60
           MASPTLITP + KS +P  P KP +TI+A  T  T          RRREFLS+   + A 
Sbjct: 1   MASPTLITPKSVKSLTPIKP-KPTTTIAATLTPPTTTSTAAATHPRRREFLSI---ITAT 60

Query: 61  SWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKY 120
           +W L P SPALASSD+EY+K+T EVI KVRTTI MD+NDPNVA AVAELRE+SNSWVAKY
Sbjct: 61  TW-LVPLSPALASSDEEYMKETEEVINKVRTTIVMDKNDPNVATAVAELRETSNSWVAKY 120

Query: 121 RKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 170
           R+EKALLGR SFRDMYSALNAVSGHYISFGPTAPIPAKR+ARILEE+DTAEKALLRGR
Sbjct: 121 RREKALLGRVSFRDMYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKALLRGR 173

The following BLAST results are available for this feature:

BLAST of Lsi11G015360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PB27A_ARATH	2.3e-47	73.13	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN...	[more]
PSB27_THEEB	1.8e-12	38.10	Photosystem II lipoprotein Psb27 OS=Thermosynechococcus elongatus (strain BP-1) ...	[more]
PSB27_SYNY3	1.6e-08	35.00	Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]

BLAST of Lsi11G015360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1S2_CUCSA	5.4e-80	95.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047350 PE=3 SV=1	[more]
I1LUF0_SOYBN	1.4e-56	72.47	Uncharacterized protein OS=Glycine max GN=GLYMA_12G202500 PE=3 SV=1	[more]
I1M3V1_SOYBN	1.9e-56	73.56	Uncharacterized protein OS=Glycine max GN=GLYMA_13G299200 PE=3 SV=1	[more]
A0A0L9UMC1_PHAAN	2.5e-56	72.57	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g150800 PE=3 SV=1	[more]
A0A0S3SHI7_PHAAN	2.5e-56	72.57	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G095400 PE=...	[more]

BLAST of Lsi11G015360 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03600.1	1.3e-48	73.13	photosystem II family protein	[more]
AT1G05385.1	6.1e-06	26.53	photosystem II 11 kDa protein-related	[more]

BLAST of Lsi11G015360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438078\|ref\|XP_004136817.1\|	7.8e-80	95.27	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativu...	[more]
gi\|659110645\|ref\|XP_008455335.1\|	1.0e-79	94.67	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo]	[more]
gi\|747092095\|ref\|XP_011093799.1\|	1.2e-56	72.73	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Sesamum indicu...	[more]
gi\|951072472\|ref\|XP_014491724.1\|	2.1e-56	71.26	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Vigna radiata ...	[more]
gi\|356543813\|ref\|XP_003540354.1\|	2.1e-56	72.47	PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic-like [Glycine m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010207	photosystem II assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR025585	PSII_Pbs27

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0009657	plastid organization
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0071484	cellular response to light intensity
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015360.1	Lsi11G015360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 39..165 score: 23
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 46..165 score: 4.6
None	No IPR available	PANTHER	PTHR34041	FAMILY NOT NAMED	coord: 1..169 score: 6.6
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 1..169 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G015360	Csa7G047350	Cucumber (Chinese Long) v2	culsiB494
Lsi11G015360	CSPI07G04480	Wild cucumber (PI 183967)	cpilsiB505
Lsi11G015360	Cucsa.147810	Cucumber (Gy14) v1	cgylsiB237
Lsi11G015360	CmaCh11G018680	Cucurbita maxima (Rimu)	cmalsiB091
Lsi11G015360	CmaCh19G009790	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G015360	CmoCh19G010120	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G015360	CmoCh11G019450	Cucurbita moschata (Rifu)	cmolsiB080
Lsi11G015360	Cla007741	Watermelon (97103) v1	lsiwmB100
Lsi11G015360	MELO3C018748	Melon (DHL92) v3.5.1	lsimeB095
Lsi11G015360	ClCG02G001140	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G015360	MELO3C018748.2	Melon (DHL92) v3.6.1	lsimedB101
Lsi11G015360	Cla97C02G027560	Watermelon (97103) v2	lsiwmbB086
Lsi11G015360	Bhi05G001594	Wax gourd	lsiwgoB116
Lsi11G015360	Cp4.1LG04g03180	Cucurbita pepo (Zucchini)	cpelsiB526
Lsi11G015360	Cp4.1LG15g07890	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G015360	CsGy7G004090	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G015360	Carg19113	Silver-seed gourd	carlsiB659
Lsi11G015360	Carg19227	Silver-seed gourd	carlsiB795
Lsi11G015360	CsaV3_7G004300	Cucumber (Chinese Long) v3	cuclsiB529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G015360	Bottle gourd (USVL1VR-Ls)	lsilsiB024
Lsi11G015360	Bottle gourd (USVL1VR-Ls)	lsilsiB048
Lsi11G015360	Cucumber (Gy14) v1	cgylsiB021
Lsi11G015360	Cucurbita maxima (Rimu)	cmalsiB198
Lsi11G015360	Cucurbita maxima (Rimu)	cmalsiB561
Lsi11G015360	Cucurbita moschata (Rifu)	cmolsiB188
Lsi11G015360	Cucurbita moschata (Rifu)	cmolsiB544
Lsi11G015360	Cucurbita pepo (Zucchini)	cpelsiB606
Lsi11G015360	Wild cucumber (PI 183967)	cpilsiB430
Lsi11G015360	Melon (DHL92) v3.5.1	lsimeB119
Lsi11G015360	Watermelon (Charleston Gray)	lsiwcgB089
Lsi11G015360	Watermelon (Charleston Gray)	lsiwcgB092
Lsi11G015360	Watermelon (97103) v1	lsiwmB099
Lsi11G015360	Watermelon (97103) v1	lsiwmB103
Lsi11G015360	Melon (DHL92) v3.6.1	lsimedB126
Lsi11G015360	Silver-seed gourd	carlsiB028
Lsi11G015360	Cucumber (Chinese Long) v3	cuclsiB453
Lsi11G015360	Watermelon (97103) v2	lsiwmbB073
Lsi11G015360	Watermelon (97103) v2	lsiwmbB083
Lsi11G015360	Wax gourd	lsiwgoB129