Carg18040 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS
BLAST of Carg18040 vs. NCBI nr
Match: XP_022930822.1 (uncharacterized protein LOC111437190 [Cucurbita moschata]) HSP 1 Score: 232.3 bits (591), Expect = 1.6e-57 Identity = 194/213 (91.08%), Postives = 194/213 (91.08%), Query Frame = 0
BLAST of Carg18040 vs. NCBI nr
Match: XP_023531071.1 (uncharacterized protein LOC111793433 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39 Identity = 183/222 (82.43%), Postives = 183/222 (82.43%), Query Frame = 0
BLAST of Carg18040 vs. NCBI nr
Match: XP_008455486.1 (PREDICTED: translation initiation factor IF-2 isoform X1 [Cucumis melo] >XP_008455487.1 PREDICTED: translation initiation factor IF-2 isoform X2 [Cucumis melo]) HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35 Identity = 142/229 (62.01%), Postives = 145/229 (63.32%), Query Frame = 0
BLAST of Carg18040 vs. NCBI nr
Match: XP_022988942.1 (uncharacterized protein LOC111486146 [Cucurbita maxima]) HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35 Identity = 182/220 (82.73%), Postives = 182/220 (82.73%), Query Frame = 0
BLAST of Carg18040 vs. NCBI nr
Match: XP_022952342.1 (uncharacterized protein LOC111455051 isoform X2 [Cucurbita moschata]) HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34 Identity = 128/229 (55.90%), Postives = 137/229 (59.83%), Query Frame = 0
BLAST of Carg18040 vs. TAIR10
Match: AT3G54680.1 (proteophosphoglycan-related) HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09 Identity = 42/91 (46.15%), Postives = 50/91 (54.95%), Query Frame = 0
BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A1S3C160|A0A1S3C160_CUCME (translation initiation factor IF-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495638 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 8.6e-36 Identity = 142/229 (62.01%), Postives = 145/229 (63.32%), Query Frame = 0
BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A0A0K3D7|A0A0A0K3D7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039270 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 8.6e-20 Identity = 59/89 (66.29%), Postives = 61/89 (68.54%), Query Frame = 0
BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A2P5E7N8|A0A2P5E7N8_9ROSA (Proteophosphoglycan-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_225970 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15 Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 0
BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A2I4DQA3|A0A2I4DQA3_9ROSI (uncharacterized protein LOC108982412 isoform X2 OS=Juglans regia OX=51240 GN=LOC108982412 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14 Identity = 79/219 (36.07%), Postives = 94/219 (42.92%), Query Frame = 0
BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A2I4DQA2|A0A2I4DQA2_9ROSI (uncharacterized protein LOC108982412 isoform X1 OS=Juglans regia OX=51240 GN=LOC108982412 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14 Identity = 79/219 (36.07%), Postives = 94/219 (42.92%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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