CmoCh19G009130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G009130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Proteophosphoglycan-related, putative
Location	Cmo_Chr19 : 8546416 .. 8548780 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTTTTGGCATGTGAGCTGCACTGGCCTGCCCTCAATCCATGATCTTCCTTCGACGACACCTCAAAACGGTGTTGTCTTCAACAATCCCCCCAATGCCAAGCAATCCATTATAAAATCCTCTCTTTCTCCTTCTGTTTCTTCTTCCTCCAGATCCTCTCGACGTTCATAATTCTTCTGTAATTCCAACAGCTTTAAGGATCCACATTGGCGGTGGTGGATGGCAAAAACCAACAAATACACCTCCATCAATTACAATCACATCTACGACAAGGATCTCTCCCCCAATTCCAAAACTGGCAACAATCCCTCCAAAAACCCATCATCTTCTTCTTCTTCCTCCTCCTCTTTCGCTTCTGCAACTTATTCTTCCATTTCTTCCGCTAACAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCCACTCCCAAACCCATCTCTTCGCCGCCGGTCCTGTCCCCTCAGCCTCAATCTCGATCCCCATCTGCCGATCCTCGTCCTGTTGCGGATCAGACCCGTCCGCAATGCGAATCCGATTCGATCTCGCTTCGCCCTCTCGGTCGGACAGGTACGGGCGCGATCGCGCCGTCTCCGATTCCGAACTTGGAGAAGGACAAGGAGATTCCTCCTCCGACTGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCTCACCTCAGGGCGGGCTTCGTCGGGAAGGAGGAGAGACCTGTGAGCGTTGGGATCCGATCTAGGGAGGCGAATCAGAGGCAGTATGGGAATTACGGGTCTCCGGGTCGGTACGGTGAAGATGGGCGGCCGAAATCCGGCGGTGCATATGAGAGAATGAACGGGGCGGGAGAGGCAGATCAGGGGGCGATGGTGAATCGACCAAGATCCAGTGGGAATCGCCCGAATTCTAGTGGATGGTATGTTTCTCTCAAATACCATCAATACAATTGAAAACTAATTTTGGCCCTGCATTTTGGGTATGGAATTGCCTTCTGTGGATGCCCTGTTACCATTGAACTGAGATGCTGTTGTGGCTTTTTGAGTTTATTACGAGATTCTCTTGATGTAGTTGACTGTCTAAAGATGAATCAATTCATTTTATAATCTCGTGAGTAAATTATAGAGTAGATGGCTCCTTTTGTCTCAATGAATTGGGATTAGGACACTGCATTATAGGTATGAAATTGCCTTATTTGGATGCCCTTTTACCATGACACTGCTACACCCTTGTTTATGAGTTTGATTTTTATGAGATTCTCTTGATTTTGAAAGGCTCTGTGAAGATGAATCAACCCATTTCATGGCTCCTTTTTTGGGTCTCTGTAGTTAGACTGCTAAGTGTTGGCCTATAAGGTGTAAAAAGTTTCTTAGGATAGTTTGAAGGTTTGACTTGTTAGAGATGAACACGACTTTCCACAATAGCATGATATTGTCCACTTTGAGCATAAGCTCTCATAGGTTTGTCTTGGGCTTCCCCAAAAGGTCTCAATGGAGATAGTATTCCTGACTTATAAACCCATGATCATTCTCTAAATTAGCGGATGTGGGTAGAAAAAATGTAGAAAAAATGTAGAAGCCTCCAAAAGAATGCCCAAATAGACCATCTTGGTCAAACATCTTGCATATCTCCCAACACAGACATCTCATTTTCAGACTTCTTGATTGTATGCTACACGCAATCTCCCAAATCTAAATAACATCACATCATATTCTATTCCTTTGATGACACGACGCAAGGAAAACAATCAAACACAGCCCCAAAAGTTCATCTTGCTTTTGCTTTACTTGTTTGTGTTCATATCATTAATGTCCTGTTGTAAACATTGCTTTCATTCAATTTGTTTTCTCACTGAATTTATGTTGGCGACGAATAGCGCTTCAACGGATTCATTCTGAAGTTGGATACTTTTCCAAGGATGAAGATGGATCACGTCGTCGAATTTTTTACTTTTTAGAATTGTTTGCCATGGAAGATAAACGGATACCACCAAGGTGACAGGATCTCAACAATGAAGTGACGTACTTCAGATTCAGATTGTTATACCTCAAGGAAATTATGTTTCTTTGGCTTCTTCACCCTTCTTCTGCATTTCTGGAGAGGGATGGAAGGTCGTTTTGGAATGTAGAACTGACCGGCGTTATGTATTGTCGTCATTTTCGTCGTCGTCGTCGTTTAACTGCTTTTAGATCAGGGTTAGCATCTTGTGTGGAGGATGCTGCTGTGTTTTTCATTTTCCATCTCACAGTTTGTAAAACAAAGTTTCTTCTGGTGTGCGAGAATATTAGGTTTCTTTGAGCTTGTTGTGGTCTATCAGTACATTTCATTGTTGAATTCTTTCTAGAGATGATTAATGAAATGGCCATTCTAATGCAA

mRNA sequence

GGGTTTTGGCATGTGAGCTGCACTGGCCTGCCCTCAATCCATGATCTTCCTTCGACGACACCTCAAAACGGTGTTGTCTTCAACAATCCCCCCAATGCCAAGCAATCCATTATAAAATCCTCTCTTTCTCCTTCTGTTTCTTCTTCCTCCAGATCCTCTCGACGTTCATAATTCTTCTGTAATTCCAACAGCTTTAAGGATCCACATTGGCGGTGGTGGATGGCAAAAACCAACAAATACACCTCCATCAATTACAATCACATCTACGACAAGGATCTCTCCCCCAATTCCAAAACTGGCAACAATCCCTCCAAAAACCCATCATCTTCTTCTTCTTCCTCCTCCTCTTTCGCTTCTGCAACTTATTCTTCCATTTCTTCCGCTAACAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCCACTCCCAAACCCATCTCTTCGCCGCCGGTCCTGTCCCCTCAGCCTCAATCTCGATCCCCATCTGCCGATCCTCGTCCTGTTGCGGATCAGACCCGTCCGCAATGCGAATCCGATTCGATCTCGCTTCGCCCTCTCGGTCGGACAGGTACGGGCGCGATCGCGCCGTCTCCGATTCCGAACTTGGAGAAGGACAAGGAGATTCCTCCTCCGACTGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCTCACCTCAGGGCGGGCTTCGTCGGGAAGGAGGAGAGACCTGTGAGCGTTGGGATCCGATCTAGGGAGGCGAATCAGAGGCAGTATGGGAATTACGGGTCTCCGGGTCGGTACGGTGAAGATGGGCGGCCGAAATCCGGCGGTGCATATGAGAGAATGAACGGGGCGGGAGAGGCAGATCAGGGGGCGATGGTGAATCGACCAAGATCCAGTGGGAATCGCCCGAATTCTAGTGGATGAGTAGATGGCTCCTTTTGTCTCAATGAATTGGGATTAGGACACTGCATTATAGCGCTTCAACGGATTCATTCTGAAGTTGGATACTTTTCCAAGGATGAAGATGGATCACGTCGTCGAATTTTTTACTTTTTAGAATTGTTTGCCATGGAAGATAAACGGATACCACCAAGGTGACAGGATCTCAACAATGAAGTGACGTACTTCAGATTCAGATTGTTATACCTCAAGGAAATTATGTTTCTTTGGCTTCTTCACCCTTCTTCTGCATTTCTGGAGAGGGATGGAAGGTCGTTTTGGAATGTAGAACTGACCGGCGTTATGTATTGTCGTCATTTTCGTCGTCGTCGTCGTTTAACTGCTTTTAGATCAGGGTTAGCATCTTGTGTGGAGGATGCTGCTGTGTTTTTCATTTTCCATCTCACAGTTTGTAAAACAAAGTTTCTTCTGGTGTGCGAGAATATTAGGTTTCTTTGAGCTTGTTGTGGTCTATCAGTACATTTCATTGTTGAATTCTTTCTAGAGATGATTAATGAAATGGCCATTCTAATGCAA

Coding sequence (CDS)

ATGGCAAAAACCAACAAATACACCTCCATCAATTACAATCACATCTACGACAAGGATCTCTCCCCCAATTCCAAAACTGGCAACAATCCCTCCAAAAACCCATCATCTTCTTCTTCTTCCTCCTCCTCTTTCGCTTCTGCAACTTATTCTTCCATTTCTTCCGCTAACAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCCACTCCCAAACCCATCTCTTCGCCGCCGGTCCTGTCCCCTCAGCCTCAATCTCGATCCCCATCTGCCGATCCTCGTCCTGTTGCGGATCAGACCCGTCCGCAATGCGAATCCGATTCGATCTCGCTTCGCCCTCTCGGTCGGACAGGTACGGGCGCGATCGCGCCGTCTCCGATTCCGAACTTGGAGAAGGACAAGGAGATTCCTCCTCCGACTGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCTCACCTCAGGGCGGGCTTCGTCGGGAAGGAGGAGAGACCTGTGAGCGTTGGGATCCGATCTAGGGAGGCGAATCAGAGGCAGTATGGGAATTACGGGTCTCCGGGTCGGTACGGTGAAGATGGGCGGCCGAAATCCGGCGGTGCATATGAGAGAATGAACGGGGCGGGAGAGGCAGATCAGGGGGCGATGGTGAATCGACCAAGATCCAGTGGGAATCGCCCGAATTCTAGTGGATGA

Homology

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BLAST of CmoCh19G009130 vs. TrEMBL
Match: A0A0A0K3D7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G039270 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.3e-96
Identity = 195/229 (85.15%), Postives = 205/229 (89.52%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSANKSHG 60
           MAKTNKYTSIN+NHIYDK+LS NSKTGNNPS N + SSSSSSSFA+ATYSSISS NKSHG
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGNNPSSNKNPSSSSSSSFATATYSSISSPNKSHG 60

Query: 61  RMLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLRPLGRTGTGA 120
           RMLVLTRPTP+PI+SP  LSPQPQSR  SAD RPV D  RPQ +SDSISLRPLGRTGTGA
Sbjct: 61  RMLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGA 120

Query: 121 IAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQYG 180
           IAPSPIP LEKD+EI PP VTLHKPEKFVPPHLRAGFVGKEERPV+VGIRSRE NQRQYG
Sbjct: 121 IAPSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYG 180

Query: 181 NYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 230
           NYGS GRYGEDGRPKSGG YERM   GEAD GAMVNRPRSSGNRP+SSG
Sbjct: 181 NYGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 229

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BLAST of CmoCh19G009130 vs. TrEMBL
Match: A0A061E3D2_THECC (Proteophosphoglycan-related, putative OS=Theobroma cacao GN=TCM_008243 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.7e-45
Identity = 127/236 (53.81%), Postives = 168/236 (71.19%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLS--PNSKTGNNPSKNPSSSSSSSSSFASATYSSISSANKS 60
           MA+TNKYTSIN+NH+ +K+L+  PNS    NP  +  +   S SS++S + ++ ++A K+
Sbjct: 1   MARTNKYTSINFNHVLEKNLTSPPNSTKTKNPQSHHPNQPPSFSSYSSISAAAAANA-KT 60

Query: 61  HGRMLVLTRPTPKPISSPPVLSPQP--QSRSPSADPR--PVADQTRPQCES-DSISLRPL 120
           HGRMLVLTRP+P PIS+PP++SP P  QS+     PR  P  DQT P   + D ISLRPL
Sbjct: 61  HGRMLVLTRPSPMPISTPPLVSPTPPKQSQPHQLQPRSAPAPDQTLPPDPAPDQISLRPL 120

Query: 121 GRTGTGAIAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSRE 180
           GRTG+G      IP  E++KE+ P +V+  KP++FVPPHLR GFVG+EERP     R RE
Sbjct: 121 GRTGSGI----SIPVQEREKEVVPVSVS-PKPDRFVPPHLRPGFVGREERPGPQVFRGRE 180

Query: 181 ANQRQYGNYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 230
            +Q+   ++GSPGRYGEDGRPK+GG YE+M   GE+D G + +RPRSSGNRP+SSG
Sbjct: 181 QSQK---HFGSPGRYGEDGRPKTGG-YEKMRRGGESDLG-LTDRPRSSGNRPSSSG 225

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BLAST of CmoCh19G009130 vs. TrEMBL
Match: U5FWS2_POPTR (Proteophosphoglycan-related family protein OS=Populus trichocarpa GN=POPTR_0013s06930g PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 126/241 (52.28%), Postives = 158/241 (65.56%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSK---TGNNPSKNPSSSSS----SSSSFASATYSSI- 60
           MA+ NKY S+N+NH+YDK++S +S    T NNPSK+PSS+S     SS +  +  Y S  
Sbjct: 1   MARANKYASVNFNHVYDKNISNSSSSNNTNNNPSKHPSSTSFYSTISSPNSPNNLYKSHL 60

Query: 61  -SSANKSHGRMLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVAD--QTRPQCESDSIS 120
            SS+ ++HGRMLVLTRPTPKPIS+       P  ++P   P  V    QT  + E D IS
Sbjct: 61  PSSSPRTHGRMLVLTRPTPKPISTIQTTPLTPSPKTPPGHPAQVQIPVQTGAEPEQDRIS 120

Query: 121 LRPLGRTGTGAIAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGI 180
           LRPLGRTG G+I  SP+   EK KE+   ++   KP+KFVPPHLR GF G+EERP     
Sbjct: 121 LRPLGRTGVGSIVSSPVRGQEKQKEVGA-SLGSPKPDKFVPPHLRPGFAGREERPGPEVF 180

Query: 181 RSREANQRQYGN-YGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSS 230
           R +E  QRQ    +GSPGR+GEDGRPKSGG YE M    E++ G +  RPRSSGNRP+SS
Sbjct: 181 RGKEVGQRQQQQFFGSPGRFGEDGRPKSGG-YETMRRGDESNLGFV--RPRSSGNRPSSS 237

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BLAST of CmoCh19G009130 vs. TrEMBL
Match: W9R312_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010540 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 124/222 (55.86%), Postives = 148/222 (66.67%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSANKSH- 60
           MAKTNKYTSIN+NHIY+K L  NS + +NP+    SSSSSS+SF   +YS+ISS+NK+H 
Sbjct: 1   MAKTNKYTSINFNHIYEKTLPANSTSNSNPNLKTPSSSSSSTSF---SYSAISSSNKTHG 60

Query: 61  GRMLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLRPLGRTGTG 120
           GRMLVLTRPTPKPIS P    PQPQ+        PV D  R +  SD ISLRPLGRTG G
Sbjct: 61  GRMLVLTRPTPKPISIP---QPQPQA--------PVRDPARAEPGSDLISLRPLGRTGGG 120

Query: 121 AIAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQY 180
               SP+ + E++  +P   V   KP+KFVPPHLR GFVG+EERP           QR  
Sbjct: 121 ----SPVVSQEREAPVP---VAPPKPDKFVPPHLRPGFVGREERP-----GPEVTGQR-- 180

Query: 181 GNYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSS 222
            N+GSPGRYGE+ RPKSGG +ERM   G+    A +NRP SS
Sbjct: 181 -NFGSPGRYGEERRPKSGGGHERMRKGGDHSDLATMNRPNSS 193

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BLAST of CmoCh19G009130 vs. TrEMBL
Match: B9RVR9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1171530 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.6e-42
Identity = 127/244 (52.05%), Postives = 161/244 (65.98%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSK---TGNNPSKNPS---SSSSSSSSFASATYSSISS 60
           MA+TNKYTSIN+NH+YDK+L+ N+K   +  +PSK PS   S+ SS +++ +   SS SS
Sbjct: 1   MARTNKYTSINFNHVYDKNLTTNNKNSASNTDPSKQPSGLYSTVSSPNTYKNHLSSSSSS 60

Query: 61  ANKSHGRMLVLTRPTPKPIS---SPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLR 120
           +++SHGRMLVLTRPTPKPIS   + P LSP PQ +S  +    + DQ R + +S+ ISLR
Sbjct: 61  SSRSHGRMLVLTRPTPKPISNIATTPPLSPSPQIKSTQSP--DIQDQDRSEPDSNLISLR 120

Query: 121 PLGRTGTGAIAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRS 180
           P GRTG+     + I       +IP   V      KFVPPHLR GFVG+EERP    +R 
Sbjct: 121 PSGRTGSSLCVSAQI-------QIPEKEV---GAGKFVPPHLRPGFVGREERPGPEVVRG 180

Query: 181 REANQRQ----YGNY--GSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRP 230
           ++A  RQ    Y  Y  GSP +YGEDGRPKSGG Y+RM   GE+D    +NRPRSSGNRP
Sbjct: 181 KDAAHRQQPQGYSGYGSGSPVQYGEDGRPKSGGGYDRMTRGGESDLN-FINRPRSSGNRP 231

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BLAST of CmoCh19G009130 vs. TAIR10
Match: AT3G54680.1 (AT3G54680.1 proteophosphoglycan-related)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-25
Identity = 101/237 (42.62%), Postives = 131/237 (55.27%), Query Frame = 1


Query: 5   NKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSANKSHGRMLV 64
           NKYTSIN+NHI  KD              P SSSSSSSS   A+YSS++   +S+GRMLV
Sbjct: 7   NKYTSINFNHILHKD--------------PPSSSSSSSS---ASYSSVA---RSNGRMLV 66

Query: 65  LTRPTPKPISSPPVLSPQPQSRSP-SADPRPVADQTRPQCESDSISLRPLGRTGTGAIAP 124
           LT+ +PKP+ SP        +  P S  PR  ++Q     +   ISLRPLG TG+ +   
Sbjct: 67  LTKSSPKPLRSPSAAPTTTTTAPPISTAPRIPSNQAISDPDPSQISLRPLGHTGSSSSLS 126

Query: 125 SPI--PNLEKDKEIPPPT-VTLH-KPEKFVPPHLRAGFVGKEERPVSVGIRSREAN---Q 184
            PI  P + K  E+  PT V+L  KP++FVPPHLR GFV K+E+P     R R+ N    
Sbjct: 127 FPIRTPEINKAPEVNAPTPVSLSPKPDRFVPPHLRPGFVRKDEKPGLNSSRVRDPNPNLN 186

Query: 185 RQYGNYGSPGR----YGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 230
           ++  N   P +    YG+ GRPKSGG YER+              PR +GNRP +SG
Sbjct: 187 QRLPNQEQPRQEYFGYGQPGRPKSGG-YERIR-----------TDPRITGNRPGTSG 211

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BLAST of CmoCh19G009130 vs. NCBI nr
Match: gi|659110930|ref|XP_008455486.1| (PREDICTED: uncharacterized protein LOC103495638 isoform X1 [Cucumis melo])

HSP 1 Score: 361.3 bits (926), Expect = 1.2e-96
Identity = 196/229 (85.59%), Postives = 206/229 (89.96%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSANKSHG 60
           MAKTNKYTSIN+NHIYDK+LS NSKTGNNPS N + SSSSSSSFA+ATYSSISS NKSHG
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGNNPSSNKNPSSSSSSSFATATYSSISSPNKSHG 60

Query: 61  RMLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLRPLGRTGTGA 120
           RMLVLTRPTPKPI+SP VLSPQPQSR  SAD RPV DQ RPQ +SDSISLRPLGRTGTGA
Sbjct: 61  RMLVLTRPTPKPITSPQVLSPQPQSRPSSADHRPVPDQPRPQSDSDSISLRPLGRTGTGA 120

Query: 121 IAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQYG 180
           IAPSPI  LEK++EI PP VTLHKPEKFVPPHLRAGFVGKEERPV+VGIRSRE NQRQYG
Sbjct: 121 IAPSPITGLEKNREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYG 180

Query: 181 NYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 230
           NYGS  RYGEDGRPKSGG YERM G GEAD GAMVNRPRSSGNRP+SSG
Sbjct: 181 NYGSSSRYGEDGRPKSGGGYERMKGVGEADLGAMVNRPRSSGNRPSSSG 229

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BLAST of CmoCh19G009130 vs. NCBI nr
Match: gi|449453547|ref|XP_004144518.1| (PREDICTED: uncharacterized protein LOC101206223 isoform X1 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 6.2e-96
Identity = 195/229 (85.15%), Postives = 205/229 (89.52%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSANKSHG 60
           MAKTNKYTSIN+NHIYDK+LS NSKTGNNPS N + SSSSSSSFA+ATYSSISS NKSHG
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGNNPSSNKNPSSSSSSSFATATYSSISSPNKSHG 60

Query: 61  RMLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLRPLGRTGTGA 120
           RMLVLTRPTP+PI+SP  LSPQPQSR  SAD RPV D  RPQ +SDSISLRPLGRTGTGA
Sbjct: 61  RMLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGA 120

Query: 121 IAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQYG 180
           IAPSPIP LEKD+EI PP VTLHKPEKFVPPHLRAGFVGKEERPV+VGIRSRE NQRQYG
Sbjct: 121 IAPSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYG 180

Query: 181 NYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 230
           NYGS GRYGEDGRPKSGG YERM   GEAD GAMVNRPRSSGNRP+SSG
Sbjct: 181 NYGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 229

[Close]

BLAST of CmoCh19G009130 vs. NCBI nr
Match: gi|700188246|gb|KGN43479.1| (hypothetical protein Csa_7G039270 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 6.2e-96
Identity = 195/229 (85.15%), Postives = 205/229 (89.52%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSANKSHG 60
           MAKTNKYTSIN+NHIYDK+LS NSKTGNNPS N + SSSSSSSFA+ATYSSISS NKSHG
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGNNPSSNKNPSSSSSSSFATATYSSISSPNKSHG 60

Query: 61  RMLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLRPLGRTGTGA 120
           RMLVLTRPTP+PI+SP  LSPQPQSR  SAD RPV D  RPQ +SDSISLRPLGRTGTGA
Sbjct: 61  RMLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGA 120

Query: 121 IAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQYG 180
           IAPSPIP LEKD+EI PP VTLHKPEKFVPPHLRAGFVGKEERPV+VGIRSRE NQRQYG
Sbjct: 121 IAPSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYG 180

Query: 181 NYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 230
           NYGS GRYGEDGRPKSGG YERM   GEAD GAMVNRPRSSGNRP+SSG
Sbjct: 181 NYGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 229

[Close]

BLAST of CmoCh19G009130 vs. NCBI nr
Match: gi|1009128535|ref|XP_015881282.1| (PREDICTED: uncharacterized protein LOC107417199 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 201.1 bits (510), Expect = 2.2e-48
Identity = 137/232 (59.05%), Postives = 162/232 (69.83%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSA-NKSH 60
           MAKTN+YT+IN+NHIYDK+L PN+   NN S    +SSSSSSS AS +YS+IS+  NK H
Sbjct: 1   MAKTNRYTTINFNHIYDKNL-PNNSNPNNASNPIKTSSSSSSSLASLSYSAISAPNNKPH 60

Query: 61  GRMLVLTRPTPKPISSPPVLSPQPQSRSP-SADPRPVADQTRPQCESDSISLRPLGRTGT 120
           GRMLVLTRPT KPIS PP LSPQPQS+S        V DQ R +  SD+ISLRPLGRTG 
Sbjct: 61  GRMLVLTRPTHKPISIPPPLSPQPQSQSSHQPQQNKVPDQDRSEQGSDTISLRPLGRTGV 120

Query: 121 GAIAPSPIPNLEKDKEIPPPTVTLH-KPEKFVPPHLRAGFVGKEERPVSVGIRSREANQR 180
           G+   S     EK+K      + +  K +KFVPPHLR GFVG+EERP    IR+REA Q+
Sbjct: 121 GSPILSSALGQEKEKHKEHSLLVVSAKTDKFVPPHLRPGFVGREERPGPEVIRTREAGQK 180

Query: 181 QYGNYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 230
              +  SPGRY +  RPKSGG YERM  AGE+D G +  RPRSSGNRP+SSG
Sbjct: 181 ---HIVSPGRYDDLDRPKSGGGYERMKRAGESDLG-IAGRPRSSGNRPSSSG 227

[Close]

BLAST of CmoCh19G009130 vs. NCBI nr
Match: gi|1009128533|ref|XP_015881281.1| (PREDICTED: uncharacterized protein LOC107417199 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 201.1 bits (510), Expect = 2.2e-48
Identity = 137/232 (59.05%), Postives = 162/232 (69.83%), Query Frame = 1


Query: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSA-NKSH 60
           MAKTN+YT+IN+NHIYDK+L PN+   NN S    +SSSSSSS AS +YS+IS+  NK H
Sbjct: 1   MAKTNRYTTINFNHIYDKNL-PNNSNPNNASNPIKTSSSSSSSLASLSYSAISAPNNKPH 60

Query: 61  GRMLVLTRPTPKPISSPPVLSPQPQSRSP-SADPRPVADQTRPQCESDSISLRPLGRTGT 120
           GRMLVLTRPT KPIS PP LSPQPQS+S        V DQ R +  SD+ISLRPLGRTG 
Sbjct: 61  GRMLVLTRPTHKPISIPPPLSPQPQSQSSHQPQQNKVPDQDRSEQGSDTISLRPLGRTGV 120

Query: 121 GAIAPSPIPNLEKDKEIPPPTVTLH-KPEKFVPPHLRAGFVGKEERPVSVGIRSREANQR 180
           G+   S     EK+K      + +  K +KFVPPHLR GFVG+EERP    IR+REA Q+
Sbjct: 121 GSPILSSALGQEKEKHKEHSLLVVSAKTDKFVPPHLRPGFVGREERPGPEVIRTREAGQK 180

Query: 181 QYGNYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 230
              +  SPGRY +  RPKSGG YERM  AGE+D G +  RPRSSGNRP+SSG
Sbjct: 181 ---HIVSPGRYDDLDRPKSGGGYERMKRAGESDLG-IAGRPRSSGNRPSSSG 227

The following BLAST results are available for this feature:

BLAST of CmoCh19G009130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G009130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3D7_CUCSA	4.3e-96	85.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G039270 PE=4 SV=1	[more]
A0A061E3D2_THECC	7.7e-45	53.81	Proteophosphoglycan-related, putative OS=Theobroma cacao GN=TCM_008243 PE=4 SV=1	[more]
U5FWS2_POPTR	1.2e-42	52.28	Proteophosphoglycan-related family protein OS=Populus trichocarpa GN=POPTR_0013s...	[more]
W9R312_9ROSA	1.2e-42	55.86	Uncharacterized protein OS=Morus notabilis GN=L484_010540 PE=4 SV=1	[more]
B9RVR9_RICCO	3.6e-42	52.05	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1171530 PE=4 SV=1	[more]

BLAST of CmoCh19G009130 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54680.1	4.6e-25	42.62	proteophosphoglycan-related	[more]

BLAST of CmoCh19G009130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110930\|ref\|XP_008455486.1\|	1.2e-96	85.59	PREDICTED: uncharacterized protein LOC103495638 isoform X1 [Cucumis melo]	[more]
gi\|449453547\|ref\|XP_004144518.1\|	6.2e-96	85.15	PREDICTED: uncharacterized protein LOC101206223 isoform X1 [Cucumis sativus]	[more]
gi\|700188246\|gb\|KGN43479.1\|	6.2e-96	85.15	hypothetical protein Csa_7G039270 [Cucumis sativus]	[more]
gi\|1009128535\|ref\|XP_015881282.1\|	2.2e-48	59.05	PREDICTED: uncharacterized protein LOC107417199 isoform X2 [Ziziphus jujuba]	[more]
gi\|1009128533\|ref\|XP_015881281.1\|	2.2e-48	59.05	PREDICTED: uncharacterized protein LOC107417199 isoform X1 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G009130.1	CmoCh19G009130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G009130	Cucsa.181230	Cucumber (Gy14) v1	cgycmoB0516
CmoCh19G009130	CmaCh19G008960	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G009130	Cla015634	Watermelon (97103) v1	cmowmB496
CmoCh19G009130	Csa7G039270	Cucumber (Chinese Long) v2	cmocuB518
CmoCh19G009130	MELO3C018861	Melon (DHL92) v3.5.1	cmomeB452
CmoCh19G009130	ClCG02G002280	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G009130	CSPI07G03280	Wild cucumber (PI 183967)	cmocpiB524
CmoCh19G009130	Lsi11G014020	Bottle gourd (USVL1VR-Ls)	cmolsiB457
CmoCh19G009130	Cp4.1LG15g07170	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G009130	Cp4.1LG04g03760	Cucurbita pepo (Zucchini)	cmocpeB492
CmoCh19G009130	MELO3C018861.2	Melon (DHL92) v3.6.1	cmomedB521
CmoCh19G009130	CsaV3_7G003160	Cucumber (Chinese Long) v3	cmocucB0622
CmoCh19G009130	Cla97C02G028710	Watermelon (97103) v2	cmowmbB512
CmoCh19G009130	Bhi05G001226	Wax gourd	cmowgoB0653
CmoCh19G009130	CsGy7G002920	Cucumber (Gy14) v2	cgybcmoB927
CmoCh19G009130	Carg18040	Silver-seed gourd	carcmoB1430
CmoCh19G009130	Carg04179	Silver-seed gourd	carcmoB0286

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh19G009130	CmoCh11G018770	Cucurbita moschata (Rifu)	cmocmoB108

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G009130	Cucumber (Chinese Long) v2	cmocuB493
CmoCh19G009130	Melon (DHL92) v3.5.1	cmomeB443
CmoCh19G009130	Cucurbita pepo (Zucchini)	cmocpeB483
CmoCh19G009130	Cucumber (Gy14) v2	cgybcmoB204
CmoCh19G009130	Melon (DHL92) v3.6.1	cmomedB513
CmoCh19G009130	Cucumber (Chinese Long) v3	cmocucB0592
CmoCh19G009130	Wax gourd	cmowgoB0663
CmoCh19G009130	Cucurbita moschata (Rifu)	cmocmoB381
CmoCh19G009130	Cucurbita maxima (Rimu)	cmacmoB142
CmoCh19G009130	Cucurbita maxima (Rimu)	cmacmoB547
CmoCh19G009130	Wild cucumber (PI 183967)	cmocpiB501