Carg18040 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18040
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	translation initiation factor IF-2 isoform X1
Location	Cucurbita_argyrosperma_scaffold_095 : 37322 .. 37963 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA

mRNA sequence

ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA

Coding sequence (CDS)

ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA

Protein sequence

MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS

Homology

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: XP_022930822.1 (uncharacterized protein LOC111437190 [Cucurbita moschata])

HSP 1 Score: 232.3 bits (591), Expect = 1.6e-57
Identity = 194/213 (91.08%), Postives = 194/213 (91.08%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKTNKYTSINFNHIYDKNLSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXITLPPVLCPQPQSRPSSADHRELPDRPRSQXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXITLPPVL PQPQSRPSSADHRELPDRPRSQ                XXXXXXXXXXX
Sbjct: 61  XXXITLPPVLSPQPQSRPSSADHRELPDRPRSQPGSDSISLRPLGRTGTXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
           XXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR 
Sbjct: 121 XXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRY 180

Query: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 214
           AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS
Sbjct: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 212

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: XP_023531071.1 (uncharacterized protein LOC111793433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39
Identity = 183/222 (82.43%), Postives = 183/222 (82.43%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKTNKYTSINFNHIYDKNLSS       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSS-----NSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXITLPPVLCPQPQSRPSSADHRELPDRP--RSQXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXX                 ADHRELPDRP     XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXADHRELPDRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPN 180
           XXXXXXXXXXXXX  LHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPN
Sbjct: 121 XXXXXXXXXXXXXXXLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPN 180

Query: 181 RCAEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           R AEDGRPKSGGGYERMR       GTVVNRPRSSGNRPSSS
Sbjct: 181 RYAEDGRPKSGGGYERMRGAGEARLGTVVNRPRSSGNRPSSS 217

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: XP_008455486.1 (PREDICTED: translation initiation factor IF-2 isoform X1 [Cucumis melo] >XP_008455487.1 PREDICTED: translation initiation factor IF-2 isoform X2 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 142/229 (62.01%), Postives = 145/229 (63.32%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSS---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKTNKYTSINFNHIYDKNLSS         XXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHG 60

Query: 61  XXXXXXXXXXXXITLPPVLCPQPQSRPSSADHRELPDRPRSQXXXXXXXXXXXXXXXXXX 120
                       IT P VL PQ    PSSADH          XXXXXXXXXX        
Sbjct: 61  RMLVLTRPTPKPITSPQVLSPQXXXXPSSADH-XXXXXXXXXXXXXXXXXXXPLGRTGTG 120

Query: 121 XXXXXXXXXXXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQY 180
                               VTLHKPEKFVPPHLRAGFVGKEERPVNVGIR RE NQRQY
Sbjct: 121 AIAPSPITGLEKNREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQY 180

Query: 181 GNYGSPNRCAEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           GNYGS +   EDGRPKSGGGYERM+       G +VNRPRSSGNRPSSS
Sbjct: 181 GNYGSSSXXXEDGRPKSGGGYERMKGVGEADLGAMVNRPRSSGNRPSSS 228

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: XP_022988942.1 (uncharacterized protein LOC111486146 [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 182/220 (82.73%), Postives = 182/220 (82.73%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKTNKYTSINFNHIYDKNLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXITLPPVLCPQPQSRPSSADHRELPDRPRSQXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXX                              XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
           XXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR 
Sbjct: 121 XXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRY 180

Query: 181 AEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           AEDGRPKSGGGYERMR       GTVVNRPRSSGNRPSSS
Sbjct: 181 AEDGRPKSGGGYERMRGAGEARLGTVVNRPRSSGNRPSSS 220

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: XP_022952342.1 (uncharacterized protein LOC111455051 isoform X2 [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 128/229 (55.90%), Postives = 137/229 (59.83%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLS---------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKTNKYTSIN+NHIYDK+LS          XXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHG 60

Query: 61  XXXXXXXXXXXXITLPPVLCPQPQSRPSSADHRELPDRPRSQXXXXXXXXXXXXXXXXXX 120
                       I+ PPVL PQPQSR   AD R + D+ R Q                  
Sbjct: 61  RMLVLTRPTPKPISSPPVLSPQPQSRXXXADPRPVADQTRPQ-CESDSISLRPLGRTGTG 120

Query: 121 XXXXXXXXXXXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQY 180
                               VTLHKPEKFVPPHLRAGFVGKEERPV+VGIR RE NQRQY
Sbjct: 121 AIAPSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQY 180

Query: 181 GNYGSPNRCAEDGRPKSGGGYERM-------RGTVVNRPRSSGNRPSSS 214
           GNYGSP       RPKSGG YERM       +G +VNRPRSSGNRP+SS
Sbjct: 181 GNYGSPXXXXXXXRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSS 228

[Close]

BLAST of Carg18040 vs. TAIR10
Match: AT3G54680.1 (proteophosphoglycan-related)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 42/91 (46.15%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 136 KPEKFVPPHLRAGFVGKEERP---------VNVGIRPREVNQRQ----YGNYGSPNRCAE 195
           KP++FVPPHLR GFV K+E+P          N  +  R  NQ Q    Y  YG P     
Sbjct: 131 KPDRFVPPHLRPGFVRKDEKPGLNSSRVRDPNPNLNQRLPNQEQPRQEYFGYGQP----- 190

Query: 196 DGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 214
            GRPKS GGYER+R      PR +GNRP +S
Sbjct: 191 -GRPKS-GGYERIR----TDPRITGNRPGTS 210

[Close]

BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A1S3C160|A0A1S3C160_CUCME (translation initiation factor IF-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495638 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.6e-36
Identity = 142/229 (62.01%), Postives = 145/229 (63.32%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSS---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKTNKYTSINFNHIYDKNLSS         XXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHG 60

Query: 61  XXXXXXXXXXXXITLPPVLCPQPQSRPSSADHRELPDRPRSQXXXXXXXXXXXXXXXXXX 120
                       IT P VL PQ    PSSADH          XXXXXXXXXX        
Sbjct: 61  RMLVLTRPTPKPITSPQVLSPQXXXXPSSADH-XXXXXXXXXXXXXXXXXXXPLGRTGTG 120

Query: 121 XXXXXXXXXXXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQY 180
                               VTLHKPEKFVPPHLRAGFVGKEERPVNVGIR RE NQRQY
Sbjct: 121 AIAPSPITGLEKNREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQY 180

Query: 181 GNYGSPNRCAEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           GNYGS +   EDGRPKSGGGYERM+       G +VNRPRSSGNRPSSS
Sbjct: 181 GNYGSSSXXXEDGRPKSGGGYERMKGVGEADLGAMVNRPRSSGNRPSSS 228

[Close]

BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A0A0K3D7|A0A0A0K3D7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039270 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.6e-20
Identity = 59/89 (66.29%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 132 VTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGG 191
           VTLHKPEKFVPPHLRAGFVGKEERPVNVGIR RE NQ                  KSGGG
Sbjct: 140 VTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQXXXXXXXXXXXXXXXXXXKSGGG 199

Query: 192 YERMR-------GTVVNRPRSSGNRPSSS 214
           YERM+       G +VNRPRSSGNRPSSS
Sbjct: 200 YERMKEVGEADLGAMVNRPRSSGNRPSSS 228

[Close]

BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A2P5E7N8|A0A2P5E7N8_9ROSA (Proteophosphoglycan-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_225970 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 53/84 (63.10%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 137 PEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAED-GRPKSGGGYERM 196
           P+KFVPPHLR GF G+EERP    IR RE+ QR    +GSP R  ED GRPKSGGG+ERM
Sbjct: 146 PDKFVPPHLRPGFAGREERPGPEVIRNREMGQRY---FGSPGRYGEDGGRPKSGGGHERM 205

Query: 197 RG------TVVNRPRSSGNRPSSS 214
           R        ++NRPRSSGNRPSSS
Sbjct: 206 RRGGESDLAILNRPRSSGNRPSSS 226

[Close]

BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A2I4DQA3|A0A2I4DQA3_9ROSI (uncharacterized protein LOC108982412 isoform X2 OS=Juglans regia OX=51240 GN=LOC108982412 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 79/219 (36.07%), Postives = 94/219 (42.92%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKTNKYT+INFNHIYDK+L +               XXXXXXX                
Sbjct: 1   MAKTNKYTTINFNHIYDKSLFANPSPSSNNTSKPTKNXXXXXXXYSSISSPKAHGRMLVL 60

Query: 61  XXXITLPPVLCPQPQSRPSSADHRELPDRPRSQXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                 P                +  PD+ RSQ                           
Sbjct: 61  TRPTPKPXXXXXXXXXXSQLQPSQSFPDQARSQ--PNSDHISLRPLGRTGTGSPIFSPVP 120

Query: 121 XXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
                      VT  KP+KFVPPHLR GF G+EERP   G+   +  +    N+ SP + 
Sbjct: 121 SLEKEKDVAIPVTSSKPDKFVPPHLRPGFEGREERP---GLELGKRRELSRNNFRSPGQY 180

Query: 181 AEDGRPKSGGGYERMRG------TVVNRPRSSGNRPSSS 214
            ED RPKSGGGYERM G       +V++PRSSG RPSSS
Sbjct: 181 GEDQRPKSGGGYERMTGGGDSDLGMVSQPRSSGYRPSSS 214

[Close]

BLAST of Carg18040 vs. TrEMBL
Match: tr|A0A2I4DQA2|A0A2I4DQA2_9ROSI (uncharacterized protein LOC108982412 isoform X1 OS=Juglans regia OX=51240 GN=LOC108982412 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 79/219 (36.07%), Postives = 94/219 (42.92%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAKTNKYT+INFNHIYDK+L +               XXXXXXX                
Sbjct: 1   MAKTNKYTTINFNHIYDKSLFANPSPSSNNTSKPTKNXXXXXXXYSSISSPKAHGRMLVL 60

Query: 61  XXXITLPPVLCPQPQSRPSSADHRELPDRPRSQXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                 P                +  PD+ RSQ                           
Sbjct: 61  TRPTPKPXXXXXXXXXXSQLQPSQSFPDQARSQ--PNSDHISLRPLGRTGTGSPIFSPVP 120

Query: 121 XXXXXXXXXXXVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
                      VT  KP+KFVPPHLR GF G+EERP   G+   +  +    N+ SP + 
Sbjct: 121 SLEKEKDVAIPVTSSKPDKFVPPHLRPGFEGREERP---GLELGKRRELSRNNFRSPGQY 180

Query: 181 AEDGRPKSGGGYERMRG------TVVNRPRSSGNRPSSS 214
            ED RPKSGGGYERM G       +V++PRSSG RPSSS
Sbjct: 181 GEDQRPKSGGGYERMTGGGDSDLGMVSQPRSSGYRPSSS 214

The following BLAST results are available for this feature:

BLAST of Carg18040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930822.1	1.6e-57	91.08	uncharacterized protein LOC111437190 [Cucurbita moschata]	[more]
XP_023531071.1	3.3e-39	82.43	uncharacterized protein LOC111793433 [Cucurbita pepo subsp. pepo]	[more]
XP_008455486.1	1.3e-35	62.01	PREDICTED: translation initiation factor IF-2 isoform X1 [Cucumis melo] >XP_0084...	[more]
XP_022988942.1	1.7e-35	82.73	uncharacterized protein LOC111486146 [Cucurbita maxima]	[more]
XP_022952342.1	1.4e-34	55.90	uncharacterized protein LOC111455051 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg18040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54680.1	3.3e-09	46.15	proteophosphoglycan-related	[more]

BLAST of Carg18040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C160\|A0A1S3C160_CUCME	8.6e-36	62.01	translation initiation factor IF-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0K3D7\|A0A0A0K3D7_CUCSA	8.6e-20	66.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039270 PE=4 SV=1	[more]
tr\|A0A2P5E7N8\|A0A2P5E7N8_9ROSA	1.3e-15	63.10	Proteophosphoglycan-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_2259...	[more]
tr\|A0A2I4DQA3\|A0A2I4DQA3_9ROSI	1.1e-14	36.07	uncharacterized protein LOC108982412 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4DQA2\|A0A2I4DQA2_9ROSI	1.1e-14	36.07	uncharacterized protein LOC108982412 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18040-RA	Carg18040-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..213

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18040	Cla015634	Watermelon (97103) v1	carwmB1066
Carg18040	Csa7G039270	Cucumber (Chinese Long) v2	carcuB1081
Carg18040	MELO3C018861	Melon (DHL92) v3.5.1	carmeB1033
Carg18040	ClCG02G002280	Watermelon (Charleston Gray)	carwcgB1037
Carg18040	CSPI07G03280	Wild cucumber (PI 183967)	carcpiB1103
Carg18040	Cucsa.181230	Cucumber (Gy14) v1	carcgyB1185
Carg18040	CmaCh19G008960	Cucurbita maxima (Rimu)	carcmaB1474
Carg18040	CmoCh11G018770	Cucurbita moschata (Rifu)	carcmoB1428
Carg18040	CmoCh19G009130	Cucurbita moschata (Rifu)	carcmoB1430
Carg18040	Lsi11G014020	Bottle gourd (USVL1VR-Ls)	carlsiB974
Carg18040	Cp4.1LG04g03760	Cucurbita pepo (Zucchini)	carcpeB1483
Carg18040	Cp4.1LG15g07170	Cucurbita pepo (Zucchini)	carcpeB1481
Carg18040	CsGy7G002920	Cucumber (Gy14) v2	carcgybB1049
Carg18040	MELO3C018861.2	Melon (DHL92) v3.6.1	carmedB1047
Carg18040	CsaV3_7G003160	Cucumber (Chinese Long) v3	carcucB1114
Carg18040	Cla97C02G028710	Watermelon (97103) v2	carwmbB1124
Carg18040	Bhi05G001226	Wax gourd	carwgoB1253

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18040	Carg04179	Silver-seed gourd	carcarB242

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18040	Cucurbita maxima (Rimu)	carcmaB1472