CsaV3_1G013900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCystatin Hv-CPI6
Locationchr1 : 9252718 .. 9253547 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACAGTGTATTATCATCGATCCCTCGTTTTAGTTCACAACCTTTAAGTCCAAACACAAGATTCCTAGAATATATATTAAACCACACACAACTATATAAATACCAAACTCGTAATTAAAGTATTCATAAACAAATCATAGAATTAAAAGTATTACTACATACACAATATGGGTAGAGCAGAACCAATTAAGGATGTGAATGACTCAGAAGTGAAATTTGCTGCAGGGCAAGCAGTTAAAATCCATAACGATCAAAAACACGATACATTGGTTTTCATTCGTGTAGTGAATGGTCTGAAGCAGGAAGTTGATACTGCCAAGCTGTATTCTCTTCTGATAGAAGCTACAAATGGTGATGGAACTCATTGGGGATATATCGCTAAGATTAAGTTGTGGCCTAAGGCCCCAAGTCATTATGATCCATATTCCCATACCTTTGAGCTCATATCTTGGGAAGATCCCCTCAAATTCTGGAACTAAGTATTCCAATGTTATCTTTTTACATCTTTACATCTTTACATCTTTACATCATAATAATATGTCCTTCTCTATATATAGAGAGAGGGCATTATTGTCTTCCAACTACTATATGAAAATGGTATAGCCTTGATTAAATAGTGATACACATAATCTATTTCTATATAGTATATGTGTGTCCATATATATATGTTTAACTTTTTCTCTTCTCTCTCCCATCTATGTTCTATGTATGTAAAGAGTTTAAATAAGACTAAATCATTAAATAGTCAATTTTACTTTATAATTTGTCGTTTACTGTTTTAAACTGATTATTTCGTTTTATTTATGACATGGGTAACTTAAGGTGTGTTT

mRNA sequence

ATGGGTAGAGCAGAACCAATTAAGGATGTGAATGACTCAGAAGTGAAATTTGCTGCAGGGCAAGCAGTTAAAATCCATAACGATCAAAAACACGATACATTGGTTTTCATTCGTGTAGTGAATGGTCTGAAGCAGGAAGTTGATACTGCCAAGCTGTATTCTCTTCTGATAGAAGCTACAAATGGTGATGGAACTCATTGGGGATATATCGCTAAGATTAAGTTGTGGCCTAAGGCCCCAAGTCATTATGATCCATATTCCCATACCTTTGAGCTCATATCTTGGGAAGATCCCCTCAAATTCTGGAACTAA

Coding sequence (CDS)

ATGGGTAGAGCAGAACCAATTAAGGATGTGAATGACTCAGAAGTGAAATTTGCTGCAGGGCAAGCAGTTAAAATCCATAACGATCAAAAACACGATACATTGGTTTTCATTCGTGTAGTGAATGGTCTGAAGCAGGAAGTTGATACTGCCAAGCTGTATTCTCTTCTGATAGAAGCTACAAATGGTGATGGAACTCATTGGGGATATATCGCTAAGATTAAGTTGTGGCCTAAGGCCCCAAGTCATTATGATCCATATTCCCATACCTTTGAGCTCATATCTTGGGAAGATCCCCTCAAATTCTGGAACTAA

Protein sequence

MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEATNGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN
Homology
[Close]
BLAST of CsaV3_1G013900 vs. NCBI nr
Match: KGN64832.1 (Cystatin Hv-CPI6 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 8.0e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT
Sbjct: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60

Query: 61  NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 104
           NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN
Sbjct: 61  NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 103

[Close]
BLAST of CsaV3_1G013900 vs. NCBI nr
Match: XP_022926153.1 (uncharacterized protein LOC111433340 [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 0 

Query: 6   PIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDT---AKLYSLLIEATNG 65
           PIKDVN  +V+ AA  AV+  N   H  L++ RVVNGL    D+    + Y L+IEA N 
Sbjct: 13  PIKDVNRRKVQEAARFAVEWKNKGGH-RLIYKRVVNGLSDNTDSHAHHQYYILVIEAIND 72

Query: 66  DGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLK 101
           DG  W YIAK+K       H+        + S ED LK
Sbjct: 73  DGIPWSYIAKVK-------HFGGNGKEPHVFSVEDVLK 102

[Close]
BLAST of CsaV3_1G013900 vs. NCBI nr
Match: XP_010449778.1 (PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa])

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G A+PIKDV+D  V   A  A++ HN Q  + LVF++VV G  Q V   K Y L I A 
Sbjct: 26  LGGAKPIKDVSDPNVVAIANYAIEEHNKQSKENLVFVKVVEGTTQVVSGTK-YDLKIAAK 85

Query: 61  NGDGTHWGYIAKI--KLWPKAPS 82
           NG G    Y A +  KLW ++ S
Sbjct: 86  NGGGQIKNYEAVVVEKLWLRSKS 107

[Close]
BLAST of CsaV3_1G013900 vs. NCBI nr
Match: XP_022926152.1 (uncharacterized protein LOC111433339 isoform X3 [Cucurbita moschata])

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 0 

Query: 6   PIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDT---AKLYSLLIEATNG 65
           PIKDVN  +V+ AA  AV+  N   H  L++ RVVNGL    D+    + Y L+IEA N 
Sbjct: 13  PIKDVNCRKVQEAARFAVEWKNKGGH-RLIYKRVVNGLSDNTDSHAHHQYYILVIEAIND 72

Query: 66  DGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLK 101
           DG  W YIAK+K       H+        + S ED LK
Sbjct: 73  DGIPWSYIAKVK-------HFGGNGKEPHVFSVEDVLK 102

[Close]
BLAST of CsaV3_1G013900 vs. NCBI nr
Match: XP_022926149.1 (uncharacterized protein LOC111433339 isoform X1 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 0 

Query: 7   IKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGL---KQEVDTAKLYSLLIEATNGD 66
           I+ +N  +V+ AA  A+K  N+++   LV+ RV+NGL   K   + ++ Y+L+IEA N D
Sbjct: 14  IRGINHKKVQEAAEAAIKWKNEREKRCLVYKRVINGLSDSKCNHEDSQHYALVIEAINDD 73

Query: 67  GTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLK 101
           G  W YIAK+K       H+        + S ED LK
Sbjct: 74  GIPWSYIAKVK-------HFGGNGKEPHVFSVEDVLK 103

[Close]
BLAST of CsaV3_1G013900 vs. TAIR10
Match: AT4G16500.1 (Cystatin/monellin superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G  +PIK+V+D +V   A  A++ HN +  + LVF++VV G  Q V   K Y L I A 
Sbjct: 29  LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTK-YDLKIAAK 88

Query: 61  NGDGTHWGYIAKI--KLW 77
           +G G    Y A +  KLW
Sbjct: 89  DGGGKIKNYEAVVVEKLW 105

[Close]
BLAST of CsaV3_1G013900 vs. Swiss-Prot
Match: sp|Q84WT8|CYT4_ARATH (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 4.7e-06
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G  +PIK+V+D +V   A  A++ HN +  + LVF++VV G  Q V   K Y L I A 
Sbjct: 29  LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTK-YDLKIAAK 88

Query: 61  NGDGTHWGYIAKI--KLW 77
           +G G    Y A +  KLW
Sbjct: 89  DGGGKIKNYEAVVVEKLW 105

[Close]
BLAST of CsaV3_1G013900 vs. TrEMBL
Match: tr|A0A0A0LVH4|A0A0A0LVH4_CUCSA (Cystatin Hv-CPI6 OS=Cucumis sativus OX=3659 GN=Csa_1G123470 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.3e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT
Sbjct: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60

Query: 61  NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 104
           NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN
Sbjct: 61  NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 103

[Close]
BLAST of CsaV3_1G013900 vs. TrEMBL
Match: tr|V4MRH3|V4MRH3_EUTSA (Cysteine proteinase inhibitor OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026611mg PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-05
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 1  MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
          +G  +PIKDV+D  V+  A  A++ HN Q    LVF +VV G K++V + K Y L+I A 
Sbjct: 23 LGGWKPIKDVSDPNVEAIAKYAIEEHNKQSKANLVFEKVVRG-KEQVVSGKKYDLIIAAK 82

Query: 61 NGDGTHWGYIAKI--KLW 77
          NG G    Y A +  +LW
Sbjct: 83 NGGGATKNYEAVVVERLW 99

[Close]
BLAST of CsaV3_1G013900 vs. TrEMBL
Match: tr|D7M9U3|D7M9U3_ARALL (Cysteine proteinase inhibitor OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_493227 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G  +PIK+V+D +V   A  A+  HN Q  + LVF++VV G  Q V   K Y L I A 
Sbjct: 28  LGTRKPIKNVSDPDVVAVAKYAIDEHNKQSKEHLVFVKVVEGTTQVVSGTK-YDLKIAAK 87

Query: 61  NGDGTHWGYIAKI--KLW 77
           +G G    Y A +  KLW
Sbjct: 88  DGSGKIKNYEAVVVEKLW 104

[Close]
BLAST of CsaV3_1G013900 vs. TrEMBL
Match: tr|A0A178V035|A0A178V035_ARATH (Cysteine proteinase inhibitor OS=Arabidopsis thaliana OX=3702 GN=AXX17_At4g19360 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-04
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G  +PIK+V+D +V   A  A++ HN +  + LVF++VV G  Q V   K Y L I A 
Sbjct: 29  LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTK-YDLKIAAR 88

Query: 61  NGDGTHWGYIAKI--KLW 77
           +G G    Y A +  KLW
Sbjct: 89  DGGGKIKNYEAVVVEKLW 105

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64832.18.0e-55100.00Cystatin Hv-CPI6 [Cucumis sativus][more]
XP_022926153.14.0e-0641.84uncharacterized protein LOC111433340 [Cucurbita moschata][more]
XP_010449778.15.2e-0643.37PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa][more]
XP_022926152.15.2e-0641.84uncharacterized protein LOC111433339 isoform X3 [Cucurbita moschata][more]
XP_022926149.11.5e-0537.11uncharacterized protein LOC111433339 isoform X1 [Cucurbita moschata][more]
BLAST of CsaV3_1G013900 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16500.12.6e-0739.74Cystatin/monellin superfamily protein[more]
BLAST of CsaV3_1G013900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84WT8|CYT4_ARATH4.7e-0639.74Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=... [more]
BLAST of CsaV3_1G013900 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVH4|A0A0A0LVH4_CUCSA5.3e-55100.00Cystatin Hv-CPI6 OS=Cucumis sativus OX=3659 GN=Csa_1G123470 PE=4 SV=1[more]
tr|V4MRH3|V4MRH3_EUTSA6.5e-0542.31Cysteine proteinase inhibitor OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026611... [more]
tr|D7M9U3|D7M9U3_ARALL7.2e-0441.03Cysteine proteinase inhibitor OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=AR... [more]
tr|A0A178V035|A0A178V035_ARATH9.4e-0439.74Cysteine proteinase inhibitor OS=Arabidopsis thaliana OX=3702 GN=AXX17_At4g19360... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004869cysteine-type endopeptidase inhibitor activity
Vocabulary: INTERPRO
TermDefinition
IPR000010Cystatin_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010951 negative regulation of endopeptidase activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013900.1CsaV3_1G013900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 1..100
e-value: 5.8E-14
score: 53.9
NoneNo IPR availableSUPERFAMILYSSF54403Cystatin/monellincoord: 4..66
IPR000010Cystatin domainPFAMPF16845SQAPIcoord: 7..72
e-value: 5.1E-12
score: 45.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013900CSPI01G13680Wild cucumber (PI 183967)cpicucB001
CsaV3_1G013900Cucsa.206990Cucumber (Gy14) v1cgycucB331
CsaV3_1G013900CsGy1G013700Cucumber (Gy14) v2cgybcucB002
CsaV3_1G013900MELO3C004914Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G013900MELO3C004914.2Melon (DHL92) v3.6.1cucmedB009
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013900Cucumber (Chinese Long) v3cuccucB021
CsaV3_1G013900Silver-seed gourdcarcucB0192
CsaV3_1G013900Silver-seed gourdcarcucB0363
CsaV3_1G013900Silver-seed gourdcarcucB0474
CsaV3_1G013900Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013900Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013900Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013900Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013900Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013900Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013900Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G013900Bottle gourd (USVL1VR-Ls)cuclsiB054
CsaV3_1G013900Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013900Watermelon (97103) v1cucwmB015
CsaV3_1G013900Watermelon (97103) v2cucwmbB032
CsaV3_1G013900Wax gourdcucwgoB017
CsaV3_1G013900Wax gourdcucwgoB051