MELO3C004914 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004914
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCysteine proteinase inhibitor (Cystatin)
Locationchr12 : 7020947 .. 7021258 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGTGCCGAACCAATTAAGGATGTCAATGACTCAGAAGTAAAATTTGCTGCAGGGGAAGCAGTTAAAATCCATAACGATAAAAAGGACGACGATTTGGTTTTCATCCGCGTAGTGAATGGTGTGAAGCAGCAAGTTGATTATGGCAAGCAGTATTCTCTGCTCATAGAAGCTAGAAATGGTGATGGAACTCATTGGGGATATTGCGCTAAGATTAAGTTGCTGCGTAAGCCCGTAAGTCATCATGATCCATATCCGCATAGCTATGTGCTCATATCTTGGGAAGATCCTTTCAAATTCTACGACTAG

mRNA sequence

ATGAGTGGTGCCGAACCAATTAAGGATGTCAATGACTCAGAAGTAAAATTTGCTGCAGGGGAAGCAGTTAAAATCCATAACGATAAAAAGGACGACGATTTGGTTTTCATCCGCGTAGTGAATGGTGTGAAGCAGCAAGTTGATTATGGCAAGCAGTATTCTCTGCTCATAGAAGCTAGAAATGGTGATGGAACTCATTGGGGATATTGCGCTAAGATTAAGTTGCTGCGTAAGCCCGTAAGTCATCATGATCCATATCCGCATAGCTATGTGCTCATATCTTGGGAAGATCCTTTCAAATTCTACGACTAG

Coding sequence (CDS)

ATGAGTGGTGCCGAACCAATTAAGGATGTCAATGACTCAGAAGTAAAATTTGCTGCAGGGGAAGCAGTTAAAATCCATAACGATAAAAAGGACGACGATTTGGTTTTCATCCGCGTAGTGAATGGTGTGAAGCAGCAAGTTGATTATGGCAAGCAGTATTCTCTGCTCATAGAAGCTAGAAATGGTGATGGAACTCATTGGGGATATTGCGCTAAGATTAAGTTGCTGCGTAAGCCCGTAAGTCATCATGATCCATATCCGCATAGCTATGTGCTCATATCTTGGGAAGATCCTTTCAAATTCTACGACTAG

Protein sequence

MSGAEPIKDVNDSEVKFAAGEAVKIHNDKKDDDLVFIRVVNGVKQQVDYGKQYSLLIEARNGDGTHWGYCAKIKLLRKPVSHHDPYPHSYVLISWEDPFKFYD*
Homology
[Close]
BLAST of MELO3C004914 vs. TrEMBL
Match: A0A0A0LVH4_CUCSA (Cystatin Hv-CPI6 OS=Cucumis sativus GN=Csa_1G123470 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-37
Identity = 78/103 (75.73%), Postives = 87/103 (84.47%), Query Frame = 1 

Query: 1   MSGAEPIKDVNDSEVKFAAGEAVKIHNDKKDDDLVFIRVVNGVKQQVDYGKQYSLLIEAR 60
           M  AEPIKDVNDSEVKFAAG+AVKIHND+K D LVFIRVVNG+KQ+VD  K YSLLIEA 
Sbjct: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60

Query: 61  NGDGTHWGYCAKIKLLRKPVSHHDPYPHSYVLISWEDPFKFYD 104
           NGDGTHWGY AKIKL  K  SH+DPY H++ LISWEDP KF++
Sbjct: 61  NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 103

[Close]
BLAST of MELO3C004914 vs. TAIR10
Match: AT4G16500.1 (AT4G16500.1 Cystatin/monellin superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 27/73 (36.99%), Postives = 41/73 (56.16%), Query Frame = 1 

Query: 1   MSGAEPIKDVNDSEVKFAAGEAVKIHNDKKDDDLVFIRVVNGVKQQVDYGKQYSLLIEAR 60
           +   +PIK+V+D +V   A  A++ HN +  + LVF++VV G  Q V  G +Y L I A+
Sbjct: 29  LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVS-GTKYDLKIAAK 88

Query: 61  NGDGTHWGYCAKI 74
           +G G    Y A +
Sbjct: 89  DGGGKIKNYEAVV 100

[Close]
BLAST of MELO3C004914 vs. NCBI nr
Match: gi|700209736|gb|KGN64832.1| (Cystatin Hv-CPI6 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 78/103 (75.73%), Postives = 87/103 (84.47%), Query Frame = 1 

Query: 1   MSGAEPIKDVNDSEVKFAAGEAVKIHNDKKDDDLVFIRVVNGVKQQVDYGKQYSLLIEAR 60
           M  AEPIKDVNDSEVKFAAG+AVKIHND+K D LVFIRVVNG+KQ+VD  K YSLLIEA 
Sbjct: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60

Query: 61  NGDGTHWGYCAKIKLLRKPVSHHDPYPHSYVLISWEDPFKFYD 104
           NGDGTHWGY AKIKL  K  SH+DPY H++ LISWEDP KF++
Sbjct: 61  NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 103

The following BLAST results are available for this feature:
BLAST of MELO3C004914 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVH4_CUCSA1.2e-3775.73Cystatin Hv-CPI6 OS=Cucumis sativus GN=Csa_1G123470 PE=4 SV=1[more]
BLAST of MELO3C004914 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16500.12.9e-0636.99 Cystatin/monellin superfamily protein[more]
BLAST of MELO3C004914 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209736|gb|KGN64832.1|1.7e-3775.73Cystatin Hv-CPI6 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020381Proteinase inhibitor I25, cystatin, conserved region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010951 negative regulation of endopeptidase activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004914T1MELO3C004914T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPFAMPF16845SQAPIcoord: 7..72
score: 4.4
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 3..95
score: 1.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 3..66
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C004914Csa1G123470Cucumber (Chinese Long) v2cumeB015
MELO3C004914CSPI01G13680Wild cucumber (PI 183967)cpimeB011
MELO3C004914Cucsa.206990Cucumber (Gy14) v1cgymeB373
MELO3C004914CsGy1G013700Cucumber (Gy14) v2cgybmeB010
MELO3C004914CsaV3_1G013900Cucumber (Chinese Long) v3cucmeB010
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004914Silver-seed gourdcarmeB0171
MELO3C004914Silver-seed gourdcarmeB0449
MELO3C004914Watermelon (97103) v2mewmbB153
MELO3C004914Wax gourdmewgoB174
MELO3C004914Cucurbita maxima (Rimu)cmameB194
MELO3C004914Cucurbita maxima (Rimu)cmameB391
MELO3C004914Cucurbita moschata (Rifu)cmomeB181
MELO3C004914Cucurbita moschata (Rifu)cmomeB382
MELO3C004914Watermelon (Charleston Gray)mewcgB149
MELO3C004914Watermelon (97103) v1mewmB146
MELO3C004914Cucurbita pepo (Zucchini)cpemeB480
MELO3C004914Cucurbita pepo (Zucchini)cpemeB490
MELO3C004914Bottle gourd (USVL1VR-Ls)lsimeB244