CsGy1G013700 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G013700
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Cystatin Hv-CPI6
Location	Chr1 : 9253729 .. 9254040 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGAGCAGAACCAATTAAGGATGTGAATGACTCAGAAGTGAAATTTGCTGCAGGGCAAGCAGTTAAAATCCATAACGATCAAAAACACGATACATTGGTTTTCATTCGTGTAGTGAATGGTCTGAAGCAGGAAGTTGATACTGCCAAGCTGTATTCTCTTCTGATAGAAGCTACAAATGGTGATGGAACTCATTGGGGATATTTCGCTAAGATTAAGTTGTGGCCTAAGGCCCCAAGTCATTATGATCCATATTCCCATACCTTTGAGCTCATATCTTGGGAAGATCCCCTCAAATTCTGGAACTAA

mRNA sequence

ATGGGTAGAGCAGAACCAATTAAGGATGTGAATGACTCAGAAGTGAAATTTGCTGCAGGGCAAGCAGTTAAAATCCATAACGATCAAAAACACGATACATTGGTTTTCATTCGTGTAGTGAATGGTCTGAAGCAGGAAGTTGATACTGCCAAGCTGTATTCTCTTCTGATAGAAGCTACAAATGGTGATGGAACTCATTGGGGATATTTCGCTAAGATTAAGTTGTGGCCTAAGGCCCCAAGTCATTATGATCCATATTCCCATACCTTTGAGCTCATATCTTGGGAAGATCCCCTCAAATTCTGGAACTAA

Coding sequence (CDS)

ATGGGTAGAGCAGAACCAATTAAGGATGTGAATGACTCAGAAGTGAAATTTGCTGCAGGGCAAGCAGTTAAAATCCATAACGATCAAAAACACGATACATTGGTTTTCATTCGTGTAGTGAATGGTCTGAAGCAGGAAGTTGATACTGCCAAGCTGTATTCTCTTCTGATAGAAGCTACAAATGGTGATGGAACTCATTGGGGATATTTCGCTAAGATTAAGTTGTGGCCTAAGGCCCCAAGTCATTATGATCCATATTCCCATACCTTTGAGCTCATATCTTGGGAAGATCCCCTCAAATTCTGGAACTAA

Protein sequence

MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEATNGDGTHWGYFAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN

Homology

[Close]

BLAST of CsGy1G013700 vs. NCBI nr
Match: KGN64832.1 (Cystatin Hv-CPI6 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 5.1e-54
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT
Sbjct: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60

Query: 61  NGDGTHWGYFAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 104
           NGDGTHWGY AKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN
Sbjct: 61  NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 103

[Close]

BLAST of CsGy1G013700 vs. NCBI nr
Match: XP_010449778.1 (PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa])

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G A+PIKDV+D  V   A  A++ HN Q  + LVF++VV G  Q V   K Y L I A 
Sbjct: 26  LGGAKPIKDVSDPNVVAIANYAIEEHNKQSKENLVFVKVVEGTTQVVSGTK-YDLKIAAK 85

Query: 61  NGDGTHWGYFAKI--KLWPKAPS 82
           NG G    Y A +  KLW ++ S
Sbjct: 86  NGGGQIKNYEAVVVEKLWLRSKS 107

[Close]

BLAST of CsGy1G013700 vs. NCBI nr
Match: XP_010434812.1 (PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa])

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G A+PIKD++D  V   A  A++ HN Q  + LVF++VV G  Q V   K Y + I A 
Sbjct: 26  LGGAKPIKDLSDPNVVAVAKYAIEEHNKQSKENLVFVKVVEGTTQVVSGTK-YDMKIAAK 85

Query: 61  NGDGTHWGYFAKI--KLWPKAPS 82
           NG G    Y A +  KLW ++ S
Sbjct: 86  NGGGQIKNYEAVVVEKLWLRSKS 107

[Close]

BLAST of CsGy1G013700 vs. NCBI nr
Match: XP_010440147.1 (PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa])

HSP 1 Score: 57.0 bits (136), Expect = 4.4e-05
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G A PIKD++D  V   A  A+K HN Q  + LVF++VV G  Q V   K Y L I A 
Sbjct: 27  LGGANPIKDLSDPNVVAVAKYAIKEHNKQSKENLVFVKVVEGTTQVVSGTK-YDLKIAAK 86

Query: 61  NGDGTHWGYFAKI--KLWPKAPS 82
           NG      Y A +  KLW ++ S
Sbjct: 87  NGGDQIKNYEAVVVEKLWLRSKS 108

[Close]

BLAST of CsGy1G013700 vs. NCBI nr
Match: XP_006414340.1 (cysteine proteinase inhibitor 4 [Eutrema salsugineum] >ESQ55793.1 hypothetical protein EUTSA_v10026611mg [Eutrema salsugineum])

HSP 1 Score: 55.8 bits (133), Expect = 9.8e-05
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1  MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
          +G  +PIKDV+D  V+  A  A++ HN Q    LVF +VV G K++V + K Y L+I A 
Sbjct: 23 LGGWKPIKDVSDPNVEAIAKYAIEEHNKQSKANLVFEKVVRG-KEQVVSGKKYDLIIAAK 82

Query: 61 NGDGTHWGYFAKI--KLW 77
          NG G    Y A +  +LW
Sbjct: 83 NGGGATKNYEAVVVERLW 99

[Close]

BLAST of CsGy1G013700 vs. TAIR10
Match: AT4G16500.1 (Cystatin/monellin superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G  +PIK+V+D +V   A  A++ HN +  + LVF++VV G  Q V   K Y L I A 
Sbjct: 29  LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTK-YDLKIAAK 88

Query: 61  NGDGTHWGYFAKI--KLW 77
           +G G    Y A +  KLW
Sbjct: 89  DGGGKIKNYEAVVVEKLW 105

[Close]

BLAST of CsGy1G013700 vs. Swiss-Prot
Match: sp|Q84WT8|CYT4_ARATH (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G  +PIK+V+D +V   A  A++ HN +  + LVF++VV G  Q V   K Y L I A 
Sbjct: 29  LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTK-YDLKIAAK 88

Query: 61  NGDGTHWGYFAKI--KLW 77
           +G G    Y A +  KLW
Sbjct: 89  DGGGKIKNYEAVVVEKLW 105

[Close]

BLAST of CsGy1G013700 vs. TrEMBL
Match: tr|A0A0A0LVH4|A0A0A0LVH4_CUCSA (Cystatin Hv-CPI6 OS=Cucumis sativus OX=3659 GN=Csa_1G123470 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.4e-54
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT
Sbjct: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60

Query: 61  NGDGTHWGYFAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 104
           NGDGTHWGY AKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN
Sbjct: 61  NGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFWN 103

[Close]

BLAST of CsGy1G013700 vs. TrEMBL
Match: tr|V4MRH3|V4MRH3_EUTSA (Cysteine proteinase inhibitor OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026611mg PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-05
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1  MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
          +G  +PIKDV+D  V+  A  A++ HN Q    LVF +VV G K++V + K Y L+I A 
Sbjct: 23 LGGWKPIKDVSDPNVEAIAKYAIEEHNKQSKANLVFEKVVRG-KEQVVSGKKYDLIIAAK 82

Query: 61 NGDGTHWGYFAKI--KLW 77
          NG G    Y A +  +LW
Sbjct: 83 NGGGATKNYEAVVVERLW 99

[Close]

BLAST of CsGy1G013700 vs. TrEMBL
Match: tr|D7M9U3|D7M9U3_ARALL (Cysteine proteinase inhibitor OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_493227 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G  +PIK+V+D +V   A  A+  HN Q  + LVF++VV G  Q V   K Y L I A 
Sbjct: 28  LGTRKPIKNVSDPDVVAVAKYAIDEHNKQSKEHLVFVKVVEGTTQVVSGTK-YDLKIAAK 87

Query: 61  NGDGTHWGYFAKI--KLW 77
           +G G    Y A +  KLW
Sbjct: 88  DGSGKIKNYEAVVVEKLW 104

[Close]

BLAST of CsGy1G013700 vs. TrEMBL
Match: tr|A0A178V035|A0A178V035_ARATH (Cysteine proteinase inhibitor OS=Arabidopsis thaliana OX=3702 GN=AXX17_At4g19360 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.3e-04
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 1   MGRAEPIKDVNDSEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVDTAKLYSLLIEAT 60
           +G  +PIK+V+D +V   A  A++ HN +  + LVF++VV G  Q V   K Y L I A 
Sbjct: 29  LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTK-YDLKIAAR 88

Query: 61  NGDGTHWGYFAKI--KLW 77
           +G G    Y A +  KLW
Sbjct: 89  DGGGKIKNYEAVVVEKLW 105

The following BLAST results are available for this feature:

BLAST of CsGy1G013700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64832.1	5.1e-54	99.03	Cystatin Hv-CPI6 [Cucumis sativus]	[more]
XP_010449778.1	5.2e-06	43.37	PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa]	[more]
XP_010434812.1	2.6e-05	40.96	PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa]	[more]
XP_010440147.1	4.4e-05	42.17	PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa]	[more]
XP_006414340.1	9.8e-05	42.31	cysteine proteinase inhibitor 4 [Eutrema salsugineum] >ESQ55793.1 hypothetical p...	[more]

BLAST of CsGy1G013700 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16500.1	2.6e-07	39.74	Cystatin/monellin superfamily protein	[more]

BLAST of CsGy1G013700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84WT8\|CYT4_ARATH	4.6e-06	39.74	Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=...	[more]

BLAST of CsGy1G013700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVH4\|A0A0A0LVH4_CUCSA	3.4e-54	99.03	Cystatin Hv-CPI6 OS=Cucumis sativus OX=3659 GN=Csa_1G123470 PE=4 SV=1	[more]
tr\|V4MRH3\|V4MRH3_EUTSA	6.5e-05	42.31	Cysteine proteinase inhibitor OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026611...	[more]
tr\|D7M9U3\|D7M9U3_ARALL	7.2e-04	41.03	Cysteine proteinase inhibitor OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=AR...	[more]
tr\|A0A178V035\|A0A178V035_ARATH	9.3e-04	39.74	Cysteine proteinase inhibitor OS=Arabidopsis thaliana OX=3702 GN=AXX17_At4g19360...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004869	cysteine-type endopeptidase inhibitor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR000010	Cystatin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010951	negative regulation of endopeptidase activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G013700.1	CsGy1G013700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 7..72 e-value: 5.6E-12 score: 45.7
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 1..100 e-value: 8.5E-14 score: 53.4
None	No IPR available	SUPERFAMILY	SSF54403	Cystatin/monellin	coord: 4..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G013700	Csa1G123470	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G013700	MELO3C004914	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G013700	CSPI01G13680	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G013700	MELO3C004914.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G013700	CsaV3_1G013900	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G013700	Wax gourd	cgybwgoB015
CsGy1G013700	Wax gourd	cgybwgoB046
CsGy1G013700	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G013700	Cucurbita maxima (Rimu)	cgybcmaB110
CsGy1G013700	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G013700	Cucurbita moschata (Rifu)	cgybcmoB104
CsGy1G013700	Cucurbita pepo (Zucchini)	cgybcpeB082
CsGy1G013700	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G013700	Bottle gourd (USVL1VR-Ls)	cgyblsiB041
CsGy1G013700	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G013700	Watermelon (97103) v1	cgybwmB012
CsGy1G013700	Silver-seed gourd	carcgybB0180
CsGy1G013700	Silver-seed gourd	carcgybB0342
CsGy1G013700	Silver-seed gourd	carcgybB0449
CsGy1G013700	Watermelon (97103) v2	cgybwmbB034