CsGy2G002440 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAA ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAA ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAA MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGESSPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS
BLAST of CsGy2G002440 vs. NCBI nr
Match: XP_011650096.1 (PREDICTED: NEDD8-specific protease 1 [Cucumis sativus] >KGN60746.1 hypothetical protein Csa_2G009350 [Cucumis sativus]) HSP 1 Score: 244.2 bits (622), Expect = 3.1e-61 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of CsGy2G002440 vs. NCBI nr
Match: XP_008460859.1 (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]) HSP 1 Score: 187.2 bits (474), Expect = 4.5e-44 Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of CsGy2G002440 vs. NCBI nr
Match: XP_022938304.1 (uncharacterized protein LOC111444439 [Cucurbita moschata]) HSP 1 Score: 133.7 bits (335), Expect = 5.8e-28 Identity = 107/165 (64.85%), Postives = 114/165 (69.09%), Query Frame = 0
BLAST of CsGy2G002440 vs. NCBI nr
Match: XP_022965990.1 (uncharacterized protein LOC111465710 [Cucurbita maxima]) HSP 1 Score: 128.3 bits (321), Expect = 2.5e-26 Identity = 105/164 (64.02%), Postives = 112/164 (68.29%), Query Frame = 0
BLAST of CsGy2G002440 vs. NCBI nr
Match: XP_023536962.1 (uncharacterized protein LOC111798189 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 123.2 bits (308), Expect = 7.9e-25 Identity = 103/165 (62.42%), Postives = 110/165 (66.67%), Query Frame = 0
BLAST of CsGy2G002440 vs. TAIR10
Match: AT5G35090.1 (unknown protein) HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09 Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of CsGy2G002440 vs. TAIR10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)) HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06 Identity = 28/56 (50.00%), Postives = 33/56 (58.93%), Query Frame = 0
BLAST of CsGy2G002440 vs. TAIR10
Match: AT5G14890.1 (NHL domain-containing protein) HSP 1 Score: 47.8 bits (112), Expect = 7.6e-06 Identity = 30/76 (39.47%), Postives = 39/76 (51.32%), Query Frame = 0
BLAST of CsGy2G002440 vs. TAIR10
Match: AT5G11070.1 (unknown protein) HSP 1 Score: 41.2 bits (95), Expect = 7.2e-04 Identity = 24/51 (47.06%), Postives = 29/51 (56.86%), Query Frame = 0
BLAST of CsGy2G002440 vs. TrEMBL
Match: tr|A0A0A0LL60|A0A0A0LL60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009350 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.0e-61 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of CsGy2G002440 vs. TrEMBL
Match: tr|A0A1S3CDF1|A0A1S3CDF1_CUCME (uncharacterized protein LOC103499607 OS=Cucumis melo OX=3656 GN=LOC103499607 PE=4 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 2.9e-44 Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of CsGy2G002440 vs. TrEMBL
Match: tr|A0A1U8AF97|A0A1U8AF97_NELNU (uncharacterized protein LOC104603387 OS=Nelumbo nucifera OX=4432 GN=LOC104603387 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 6.4e-15 Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0
BLAST of CsGy2G002440 vs. TrEMBL
Match: tr|A0A2H3YQ82|A0A2H3YQ82_PHODC (uncharacterized protein LOC103715980 OS=Phoenix dactylifera OX=42345 GN=LOC103715980 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.4e-14 Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 0
BLAST of CsGy2G002440 vs. TrEMBL
Match: tr|A0A2P5BXN0|A0A2P5BXN0_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_305310 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 8.6e-12 Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |