Cla013601 (gene) Watermelon (97103) v1

NameCla013601
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 27675903 .. 27676388 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATTCGAACGAACACAAAGGAAATGCCTCGCCGTCGTCTCTGAAGGAGATGCTCAAATCTACTCTGTGTTTATCTTGTTGCCTCCGTAAGCACCGGAGTGGCCACCACCACGACCACCACCACCACCACCATCACCACAGGCGGATGTCAACTTCCTCCGACGGCGATTCGCCTGGACCGCTTATGAGGTGTTCTTCTGCTAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGATCAAGGATCGACGTCCGCATTTCATTTCGCGACTCGGCCGCCATGGACGCCGCCACTCTGCTTCAGCCGATTTCCGCTACGATGCGCTTAGTTACGCGCTTAATTTCGATGAAGGATACGATGAAGGTCATGTCGATGATGAGTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGCCTTCTCCACCGAAATCTTCGCCGTCTTCATCTAATGCGTCGAGGGAGATGATCACGGCGTTTAGTTAA

mRNA sequence

ATGGACGATTCGAACGAACACAAAGGAAATGCCTCGCCGTCGTCTCTGAAGGAGATGCTCAAATCTACTCTGTGTTTATCTTGTTGCCTCCGTAAGCACCGGAGTGGCCACCACCACGACCACCACCACCACCACCATCACCACAGGCGGATGTCAACTTCCTCCGACGGCGATTCGCCTGGACCGCTTATGAGGTGTTCTTCTGCTAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGATCAAGGATCGACGTCCGCATTTCATTTCGCGACTCGGCCGCCATGGACGCCGCCACTCTGCTTCAGCCGATTTCCGCTACGATGCGCTTAGTTACGCGCTTAATTTCGATGAAGGATACGATGAAGGTCATGTCGATGATGAGTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGCCTTCTCCACCGAAATCTTCGCCGTCTTCATCTAATGCGTCGAGGGAGATGATCACGGCGTTTAGTTAA

Coding sequence (CDS)

ATGGACGATTCGAACGAACACAAAGGAAATGCCTCGCCGTCGTCTCTGAAGGAGATGCTCAAATCTACTCTGTGTTTATCTTGTTGCCTCCGTAAGCACCGGAGTGGCCACCACCACGACCACCACCACCACCACCATCACCACAGGCGGATGTCAACTTCCTCCGACGGCGATTCGCCTGGACCGCTTATGAGGTGTTCTTCTGCTAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGATCAAGGATCGACGTCCGCATTTCATTTCGCGACTCGGCCGCCATGGACGCCGCCACTCTGCTTCAGCCGATTTCCGCTACGATGCGCTTAGTTACGCGCTTAATTTCGATGAAGGATACGATGAAGGTCATGTCGATGATGAGTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGCCTTCTCCACCGAAATCTTCGCCGTCTTCATCTAATGCGTCGAGGGAGATGATCACGGCGTTTAGTTAA

Protein sequence

MDDSNEHKGNASPSSLKEMLKSTLCLSCCLRKHRSGHHHDHHHHHHHHRRMSTSSDGDSPGPLMRCSSAKDKSRSRESPEIKDRRPHFISRLGRHGRRHSASADFRYDALSYALNFDEGYDEGHVDDEFPLRNFSSRLPPSPPKSSPSSSNASREMITAFS
BLAST of Cla013601 vs. Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=INO80 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.3e-06
Identity = 31/84 (36.90%), Postives = 35/84 (41.67%), Query Frame = 1

Query: 31  RKHRSGHHHDHHHHHHHHRRMSTSSDGDSPGPLMRCSSAKDKSR------------SRES 90
           R  R  HHH HHHHHHHHRR     DGD P   +   +A   S             S  S
Sbjct: 26  RDSRPHHHHRHHHHHHHHRR-----DGDLPAGAVAGEAATASSNAGGANAHQHSTFSLRS 85

Query: 91  PEIKDRRPHFISRLGRHGRRHSAS 103
           P+ + R P F S  G +   H+ S
Sbjct: 86  PKPEYRPPPFSSPNGHNHSHHNTS 104

BLAST of Cla013601 vs. TrEMBL
Match: A0A0A0LL60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 8.3e-78
Identity = 143/163 (87.73%), Postives = 152/163 (93.25%), Query Frame = 1

Query: 1   MDDSNEHKGNASPSSLKEMLKSTLCLSCCLRKHRSGHHHDHHHHHHHHRRM-STSSDGDS 60
           MDDSNEHKGN+SPSSLKEMLKS+LCLSCCLRKHR+GHHH HHHHHHHHRRM S SSDG+S
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61  -PGPLMRCSSAKDKSRSRESPEIKDRRPHFISRLGRHGRRHSASADFRYDALSYALNFDE 120
            PGPLMRCSSAKDKSRSRE  +IKDR P FISRLGRHGRRHSASADF YDALSY+LNFDE
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDE 120

Query: 121 GYDEGHVDDEFPLRNFSSRLPPSPPKSSPSSSNASREMITAFS 162
           GYDEGHVDD+FPLRNFSSRLP SPPKSSPS++ ASREMITAFS
Sbjct: 121 GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

BLAST of Cla013601 vs. NCBI nr
Match: gi|659071606|ref|XP_008460859.1| (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 4.8e-79
Identity = 145/165 (87.88%), Postives = 152/165 (92.12%), Query Frame = 1

Query: 1   MDDSNEHKGNASPSSLKEMLKSTLCLSCCLRKHRSGHHHDHHHHHHHH----RRMSTSSD 60
           MDDSNEHKGN+S S+LKEMLKS+LCLSCCLRKHR+GHHH HHHHHHHH    RRMS SSD
Sbjct: 1   MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61  GDSPGPLMRCSSAKDKSRSRESPEIKDRRPHFISRLGRHGRRHSASADFRYDALSYALNF 120
           GDSPGPL RCSSAKDKSRSRE  +IKDR P+FISRLGRHGRRHSASADFRYDALSY+LNF
Sbjct: 61  GDSPGPLTRCSSAKDKSRSRECHDIKDRLPNFISRLGRHGRRHSASADFRYDALSYSLNF 120

Query: 121 DEGYDEGHVDDEFPLRNFSSRLPPSPPKSSPSSSNASREMITAFS 162
           DEGYDEGHVDDEFPLRNFSSRLP SPPKSSPSSS ASREMITAFS
Sbjct: 121 DEGYDEGHVDDEFPLRNFSSRLPASPPKSSPSSSTASREMITAFS 165

BLAST of Cla013601 vs. NCBI nr
Match: gi|778673966|ref|XP_011650096.1| (PREDICTED: NEDD8-specific protease 1 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-77
Identity = 143/163 (87.73%), Postives = 152/163 (93.25%), Query Frame = 1

Query: 1   MDDSNEHKGNASPSSLKEMLKSTLCLSCCLRKHRSGHHHDHHHHHHHHRRM-STSSDGDS 60
           MDDSNEHKGN+SPSSLKEMLKS+LCLSCCLRKHR+GHHH HHHHHHHHRRM S SSDG+S
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61  -PGPLMRCSSAKDKSRSRESPEIKDRRPHFISRLGRHGRRHSASADFRYDALSYALNFDE 120
            PGPLMRCSSAKDKSRSRE  +IKDR P FISRLGRHGRRHSASADF YDALSY+LNFDE
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDE 120

Query: 121 GYDEGHVDDEFPLRNFSSRLPPSPPKSSPSSSNASREMITAFS 162
           GYDEGHVDD+FPLRNFSSRLP SPPKSSPS++ ASREMITAFS
Sbjct: 121 GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

BLAST of Cla013601 vs. NCBI nr
Match: gi|743808138|ref|XP_010928264.1| (PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis])

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-22
Identity = 67/142 (47.18%), Postives = 87/142 (61.27%), Query Frame = 1

Query: 6   EHKGNASPSSLKEMLKSTLCLSCCLRKHRSGHHHDHHHHHHHHRRMSTSSDGDSPGPLMR 65
           E    +SPSSLK+ L+S++C SCC R    G              ++ ++D + P  L+R
Sbjct: 4   ETSSPSSPSSLKQKLRSSICFSCCFRVAPGGEDP-----------VAGAADEERPLSLIR 63

Query: 66  CSSAKDKSRSRESPEIKDRRPHFISRLGRHGRRHSASADFRYDALSYALNFDEGY-DEGH 125
            SS   +S+++E PEIK+R    ISR+GR  R+   S DF YDALSYALNFDEG+ DE  
Sbjct: 64  SSSVWLRSKAQELPEIKNRCRGMISRMGRQRRQ---SGDFGYDALSYALNFDEGFEDEAL 123

Query: 126 VDDEFPLRNFSSRLPPSPPKSS 147
            D+EF  RNFSSRLP SPP  S
Sbjct: 124 ADEEFRYRNFSSRLPASPPPPS 131

BLAST of Cla013601 vs. NCBI nr
Match: gi|720031112|ref|XP_010265711.1| (PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera])

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-21
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 1

Query: 12  SPSSLKEMLKSTLCLSCCLRKHRSGHHHDHHHHHHHHRRMSTSSDGDSPGPLMRCSSAKD 71
           S SSLK  L+S+LCLSCC    R                   + + D    L+R SS+  
Sbjct: 8   SSSSLKHKLRSSLCLSCCFPSGRR-----------------EALEPDEKPRLIRASSSWL 67

Query: 72  KSRSRESPEIKDRRPHFISRLGRHGRRHSASADFRYDALSYALNFDEGYDEGHVDDEFPL 131
           +SR++E PEIK++  + ISR+G+ GRRHS   DFRYD LSY+LNFDEG D+   DD FPL
Sbjct: 68  RSRTQELPEIKEKCRNLISRIGK-GRRHSG--DFRYDPLSYSLNFDEGIDDTQADD-FPL 121

Query: 132 RNFSSRLPPSPPKSS 147
           RNFS+RLP SPP S+
Sbjct: 128 RNFSARLPASPPMST 121

BLAST of Cla013601 vs. NCBI nr
Match: gi|645275604|ref|XP_008242899.1| (PREDICTED: uncharacterized protein LOC103341197 [Prunus mume])

HSP 1 Score: 109.8 bits (273), Expect = 4.6e-21
Identity = 75/174 (43.10%), Postives = 100/174 (57.47%), Query Frame = 1

Query: 1   MDDSNEHKGNASPSSLKEMLKSTLCLSCCLRKHRSGHH--------HDHHHHHHHHRRMS 60
           M+  NEH+   SPSSLK+ L+S+LC+  C  K    HH        H H  +    R  S
Sbjct: 2   MEPLNEHEP-CSPSSLKQKLRSSLCIIPCFPKTTPHHHSITAPTTPHAHSANVSLVRNSS 61

Query: 61  TSSDGDSPGPLMRCSSAKDKSRSRESPEIKDRRPHFISRLGRH--GRRHSASADFRYDAL 120
            SS   S             +   E  E+KD+    I R+GR    RRHSASADF+YDAL
Sbjct: 62  FSSSSKSRSSYHHHHHHGHHNSHYEFTELKDKCKSLIGRMGRSHTARRHSASADFKYDAL 121

Query: 121 SYALNFDEGYDEGHVDDEFPLRNFSSRLPPSPPKSSPSSS---NASREMITAFS 162
           SYALNFD  ++E +++D +P R+FS+RLPPSPP++S  S+   +AS+E ITA S
Sbjct: 122 SYALNFD--HEEANIED-YPFRSFSARLPPSPPRTSQDSAASPSASKE-ITACS 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
INO80_GIBZE9.3e-0636.90Putative DNA helicase INO80 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FG... [more]
Match NameE-valueIdentityDescription
A0A0A0LL60_CUCSA8.3e-7887.73Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659071606|ref|XP_008460859.1|4.8e-7987.88PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo][more]
gi|778673966|ref|XP_011650096.1|1.2e-7787.73PREDICTED: NEDD8-specific protease 1 [Cucumis sativus][more]
gi|743808138|ref|XP_010928264.1|5.4e-2247.18PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis][more]
gi|720031112|ref|XP_010265711.1|3.5e-2148.89PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera][more]
gi|645275604|ref|XP_008242899.1|4.6e-2143.10PREDICTED: uncharacterized protein LOC103341197 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016043 cellular component organization
biological_process GO:0048868 pollen tube development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013601Cla013601.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 4..157
score: 1.8
NoneNo IPR availablePANTHERPTHR33168:SF4SUBFAMILY NOT NAMEDcoord: 4..157
score: 1.8