CmoCh12G011860 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA
BLAST of CmoCh12G011860 vs. TrEMBL
Match: A0A0A0LL60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 5.6e-58 Identity = 126/165 (76.36%), Postives = 136/165 (82.42%), Query Frame = 1
BLAST of CmoCh12G011860 vs. TrEMBL
Match: G7JHT0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g116500 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.9e-14 Identity = 64/142 (45.07%), Postives = 75/142 (52.82%), Query Frame = 1
BLAST of CmoCh12G011860 vs. TrEMBL
Match: A0A068USA7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031261001 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 4.9e-14 Identity = 62/148 (41.89%), Postives = 81/148 (54.73%), Query Frame = 1
BLAST of CmoCh12G011860 vs. TrEMBL
Match: R0F954_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007013mg PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13 Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = 1
BLAST of CmoCh12G011860 vs. TrEMBL
Match: A0A059CM75_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00437 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.7e-12 Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = 1
BLAST of CmoCh12G011860 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein) HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12 Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 1
BLAST of CmoCh12G011860 vs. TAIR10
Match: AT3G01430.1 (AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)) HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06 Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 1
BLAST of CmoCh12G011860 vs. TAIR10
Match: AT5G14890.1 (AT5G14890.1 NHL domain-containing protein) HSP 1 Score: 47.4 bits (111), Expect = 9.9e-06 Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1
BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|659071606|ref|XP_008460859.1| (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]) HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58 Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 1
BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|778673966|ref|XP_011650096.1| (PREDICTED: NEDD8-specific protease 1 [Cucumis sativus]) HSP 1 Score: 231.9 bits (590), Expect = 8.0e-58 Identity = 126/165 (76.36%), Postives = 136/165 (82.42%), Query Frame = 1
BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|743808138|ref|XP_010928264.1| (PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis]) HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17 Identity = 66/139 (47.48%), Postives = 84/139 (60.43%), Query Frame = 1
BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|720031112|ref|XP_010265711.1| (PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera]) HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16 Identity = 67/140 (47.86%), Postives = 81/140 (57.86%), Query Frame = 1
BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|1012002310|ref|XP_015934323.1| (PREDICTED: uncharacterized protein LOC107460476 [Arachis duranensis]) HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15 Identity = 66/150 (44.00%), Postives = 82/150 (54.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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