CmoCh12G011860 (gene) Cucurbita moschata (Rifu)

NameCmoCh12G011860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
LocationCmo_Chr12 : 10712079 .. 10712564 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

mRNA sequence

ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

Coding sequence (CDS)

ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA
BLAST of CmoCh12G011860 vs. TrEMBL
Match: A0A0A0LL60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.6e-58
Identity = 126/165 (76.36%), Postives = 136/165 (82.42%), Query Frame = 1

Query: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQH---QRRMSFSSDGDV 60
           MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL  H H   +R MS SSDG+ 
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61  -PSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNF 120
            P PL RCSSAKDKSRSRE  + K D  P FISRLGRH RRHS AS DFHYDALSY+LNF
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIK-DRLPSFISRLGRHGRRHS-ASADFHYDALSYSLNF 120

Query: 121 DEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 162
           DEGYDEGHVDD FPLRNFSSRLPASPPKS+PS+T  SREM TA+S
Sbjct: 121 DEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

BLAST of CmoCh12G011860 vs. TrEMBL
Match: G7JHT0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g116500 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-14
Identity = 64/142 (45.07%), Postives = 75/142 (52.82%), Query Frame = 1

Query: 12  SPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKS 71
           SP SLK K+KSSLC SCC   HR                      V   + R SS +  +
Sbjct: 11  SPHSLKYKLKSSLCFSCCFSHHR----------------------VKPRIVRSSSLRTHN 70

Query: 72  RSRESPESKTDWRPH-------FISRLGRHSRRHSSASVDFHYDALSYALNF-DEGYDEG 131
           R+  +     D  PH       FISR+  H RRHS+   DFHYDALSYALNF D+  DE 
Sbjct: 71  RNHNNNSRSIDL-PHLKEKCTNFISRIVHHRRRHSA---DFHYDALSYALNFEDDANDEK 123

Query: 132 HVDDAFPLRNFSSRLPASPPKS 146
            VDD   LR+FS+RLPASPP S
Sbjct: 131 SVDD---LRSFSARLPASPPLS 123

BLAST of CmoCh12G011860 vs. TrEMBL
Match: A0A068USA7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031261001 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.9e-14
Identity = 62/148 (41.89%), Postives = 81/148 (54.73%), Query Frame = 1

Query: 11  ASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDK 70
           ASP SLK+KIK SLC  CC RRH +GH         R++  S  G    PL     + DK
Sbjct: 10  ASPHSLKSKIKDSLCFYCCFRRHHHGH---------RQVLDSPTGPPTPPLP----SDDK 69

Query: 71  S-----RSRESPESKTDWRPHFISRLGR-------HSRRHSSASVDFHYDALSYALNFDE 130
                 ++R++ + K D +   +   GR       H +RH SA  +F YD LSY+LNF +
Sbjct: 70  PTLLWLKTRKAHDLKDDIKDKCMMVFGRVGNGINRHHKRHPSA--EFRYDPLSYSLNFAD 129

Query: 131 GYDEGHVDDAFPLRNFSSRLPASPPKSA 147
           G+DE   DD +PLRNFS+RLP S P  A
Sbjct: 130 GFDE---DDEYPLRNFSARLPPSQPVEA 139

BLAST of CmoCh12G011860 vs. TrEMBL
Match: R0F954_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007013mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = 1

Query: 9   ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAK 68
           E+ S  SLK K+KS  C++ C R   + HH +   +     S S+  D  +   R    K
Sbjct: 4   ESMSHLSLKKKLKSRFCMAGCFRTSNHHHHDVPDDRPSSPTSPSAATDKTTQSPRGGGIK 63

Query: 69  DKSRSRESPESKTDWRPH-FISRLG----------RHSRRHSSASVDFHYDALSYALNFD 128
            KS       SK+  +   FI R+G          +H RRH++   DFHYD  SYALNFD
Sbjct: 64  TKSPRLNRTLSKSQEKCRSFIHRMGGGVSGVGGHGKHVRRHTT---DFHYDPSSYALNFD 123

Query: 129 EGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS 154
           +G ++ ++D  FPLRNFS+RLP SPP SA + TE+S
Sbjct: 124 KGDEDDNID-RFPLRNFSARLPRSPPSSAKAGTESS 155

BLAST of CmoCh12G011860 vs. TrEMBL
Match: A0A059CM75_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00437 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-12
Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = 1

Query: 56  DVPSPLT-RCSSAKDKS-RSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYA 115
           D PSPL  R S    +   ++E PE K   + H  SR+GRH RRHS  SVD  YDALSY+
Sbjct: 18  DAPSPLLGRLSLLSPRPMNAQEMPEFKDKAKNHPRSRVGRHKRRHS--SVDLRYDALSYS 77

Query: 116 LNFDEG--YDEGHVDDAFPLRNFSSRLPASPPKSAPSST 151
           +NFDEG   DEG VDD  P RNF SRLPA+P ++  + T
Sbjct: 78  MNFDEGGVVDEGKVDDELPSRNFISRLPATPERTTHAIT 114

BLAST of CmoCh12G011860 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 1

Query: 9   ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAK 68
           E  +  SL+ K+KS  C++ C R   N HHH            +++    SP       K
Sbjct: 4   ETMTNLSLQKKLKSRFCIAGCFRT-TNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTK 63

Query: 69  DKSRSRESPESKTDWRPHFISRLG----------RHSRRHSSASVDFHYDALSYALNFDE 128
               +R   +S    +   I R+G          +H RRH++   DFHYD  SYALNFD+
Sbjct: 64  SPRLTRTLSKSHEKCKS-LIHRMGGGVGGVGGHGKHIRRHTA---DFHYDPSSYALNFDK 123

Query: 129 GYDEGHVDDAFPLRNFSSRLPASPPKSAPSS 150
           G ++ ++ D FPLRNFS+RLP SPP SA ++
Sbjct: 124 GDEDDNI-DRFPLRNFSARLPHSPPSSAKAA 148

BLAST of CmoCh12G011860 vs. TAIR10
Match: AT3G01430.1 (AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1))

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 1

Query: 99  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS 154
           SS    F YD LSY+LNFD+G   GH DD FP R++S R  A    S P ST+ S
Sbjct: 119 SSDQGKFRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAA---PSLPVSTKCS 170

BLAST of CmoCh12G011860 vs. TAIR10
Match: AT5G14890.1 (AT5G14890.1 NHL domain-containing protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.9e-06
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1

Query: 103 VDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS 154
           V F YD+ SY+LNFD+G   GH +D FP R++S R  A    S P ST+ S
Sbjct: 693 VSFRYDSWSYSLNFDDGKQTGHFEDEFPYRDYSMRFAA---PSLPVSTKCS 740

BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|659071606|ref|XP_008460859.1| (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58
Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 1

Query: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQ------RRMSFSSD 60
           MDDSNEHK N+S S+LK  +KSSLCLSCCLR+HRNGHHHL  H H       RRMS SSD
Sbjct: 1   MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61  GDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYAL 120
           GD P PLTRCSSAKDKSRSRE  + K D  P+FISRLGRH RRHS AS DF YDALSY+L
Sbjct: 61  GDSPGPLTRCSSAKDKSRSRECHDIK-DRLPNFISRLGRHGRRHS-ASADFRYDALSYSL 120

Query: 121 NFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 162
           NFDEGYDEGHVDD FPLRNFSSRLPASPPKS+PSS+  SREM TA+S
Sbjct: 121 NFDEGYDEGHVDDEFPLRNFSSRLPASPPKSSPSSSTASREMITAFS 165

BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|778673966|ref|XP_011650096.1| (PREDICTED: NEDD8-specific protease 1 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 8.0e-58
Identity = 126/165 (76.36%), Postives = 136/165 (82.42%), Query Frame = 1

Query: 1   MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQH---QRRMSFSSDGDV 60
           MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL  H H   +R MS SSDG+ 
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61  -PSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNF 120
            P PL RCSSAKDKSRSRE  + K D  P FISRLGRH RRHS AS DFHYDALSY+LNF
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIK-DRLPSFISRLGRHGRRHS-ASADFHYDALSYSLNF 120

Query: 121 DEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS 162
           DEGYDEGHVDD FPLRNFSSRLPASPPKS+PS+T  SREM TA+S
Sbjct: 121 DEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|743808138|ref|XP_010928264.1| (PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis])

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 66/139 (47.48%), Postives = 84/139 (60.43%), Query Frame = 1

Query: 6   EHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCS 65
           E    +SPSSLK K++SS+C SCC R    G         +  ++ ++D + P  L R S
Sbjct: 4   ETSSPSSPSSLKQKLRSSICFSCCFRVAPGG---------EDPVAGAADEERPLSLIRSS 63

Query: 66  SAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGY-DEGH 125
           S   +S+++E PE K   R   ISR+GR  R+    S DF YDALSYALNFDEG+ DE  
Sbjct: 64  SVWLRSKAQELPEIKNRCRG-MISRMGRQRRQ----SGDFGYDALSYALNFDEGFEDEAL 123

Query: 126 VDDAFPLRNFSSRLPASPP 144
            D+ F  RNFSSRLPASPP
Sbjct: 124 ADEEFRYRNFSSRLPASPP 128

BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|720031112|ref|XP_010265711.1| (PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera])

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 67/140 (47.86%), Postives = 81/140 (57.86%), Query Frame = 1

Query: 6   EHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCS 65
           E     S SSLK K++SSLCLSCC    R                 + + D    L R S
Sbjct: 2   EDDHRNSSSSLKHKLRSSLCLSCCFPSGRRE---------------ALEPDEKPRLIRAS 61

Query: 66  SAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGYDEGHV 125
           S+  +SR++E PE K   R + ISR+G+  RRHS    DF YD LSY+LNFDEG D+   
Sbjct: 62  SSWLRSRTQELPEIKEKCR-NLISRIGK-GRRHSG---DFRYDPLSYSLNFDEGIDDTQA 120

Query: 126 DDAFPLRNFSSRLPASPPKS 146
           DD FPLRNFS+RLPASPP S
Sbjct: 122 DD-FPLRNFSARLPASPPMS 120

BLAST of CmoCh12G011860 vs. NCBI nr
Match: gi|1012002310|ref|XP_015934323.1| (PREDICTED: uncharacterized protein LOC107460476 [Arachis duranensis])

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 66/150 (44.00%), Postives = 82/150 (54.67%), Query Frame = 1

Query: 6   EHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCS 65
           E     SP SLK K++SSLCLSCC  +    HHH                 V   + R +
Sbjct: 4   EDSSPGSPHSLKHKLRSSLCLSCCFPQIL--HHHR----------------VQPRIVRSA 63

Query: 66  SAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNF-DEGYDEGH 125
           S   KSRS + P+ K     +FI+R+GRH   H   S DFHYDA SYALNF DE  D+  
Sbjct: 64  SLHSKSRSNDFPQIKEKCC-NFIARIGRHHHHHRRHSADFHYDAFSYALNFEDEASDDRS 123

Query: 126 VDDAFPLRNFSSRLPAS-PPKSAPSSTETS 154
           VDD   LR+FS+RLP S PPK +P   +T+
Sbjct: 124 VDD---LRSFSARLPQSPPPKESPVPAKTA 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LL60_CUCSA5.6e-5876.36Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1[more]
G7JHT0_MEDTR2.9e-1445.07Uncharacterized protein OS=Medicago truncatula GN=MTR_4g116500 PE=4 SV=1[more]
A0A068USA7_COFCA4.9e-1441.89Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031261001 PE=4 SV=1[more]
R0F954_9BRAS2.5e-1339.74Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007013mg PE=4 SV=1[more]
A0A059CM75_EUCGR2.7e-1252.53Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00437 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G35090.13.2e-1235.76 unknown protein[more]
AT3G01430.12.0e-0650.91 BEST Arabidopsis thaliana protein match is: NHL domain-containing pr... [more]
AT5G14890.19.9e-0649.02 NHL domain-containing protein[more]
Match NameE-valueIdentityDescription
gi|659071606|ref|XP_008460859.1|1.2e-5875.45PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo][more]
gi|778673966|ref|XP_011650096.1|8.0e-5876.36PREDICTED: NEDD8-specific protease 1 [Cucumis sativus][more]
gi|743808138|ref|XP_010928264.1|3.1e-1747.48PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis][more]
gi|720031112|ref|XP_010265711.1|2.6e-1647.86PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera][more]
gi|1012002310|ref|XP_015934323.1|2.9e-1544.00PREDICTED: uncharacterized protein LOC107460476 [Arachis duranensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016043 cellular component organization
biological_process GO:0048868 pollen tube development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G011860.1CmoCh12G011860.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168FAMILY NOT NAMEDcoord: 4..159
score: 2.9
NoneNo IPR availablePANTHERPTHR33168:SF4SUBFAMILY NOT NAMEDcoord: 4..159
score: 2.9

The following gene(s) are paralogous to this gene:

None