Csa2G009350 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G009350
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 1596754 .. 1597645 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCCCACACACACATATATAAACCCCCAACTTCCCTTTATTCTCTAACCGCGTTCTTCAGTTATAAAAAATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAATTTAATCCAATATATCAATCGAATCATATTTATGTGGAAGGCGCTTTGAGGTTTTAATTCCCGGCCGATCGTTAATAATTTTATCACGGCGAACTGATCGGTGTGGTTATACTTATGAACGATGAGGTTCACTGGAATTTAAGAGATCGAATTCCAAAAGGTACATTTCTCGCAGATTTTTCAATGTATAAATCCTCTGGAAATACGTTTTGGTTTTTTTTTTTTTTTTTGCACAACTTTTTCTTCGTGGAAATATCATATAAATATATAATACATATATGTAATTGCTTGTGTTTATGTAGCATATTCGGATTTTGCAACATAGTTTT

mRNA sequence

ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAA

Coding sequence (CDS)

ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAA

Protein sequence

MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGESSPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS*

Homology

[Close]

BLAST of Csa2G009350 vs. TrEMBL
Match: A0A0A0LL60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-92
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60
           MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61  SPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDE 120
           SPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDE
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDE 120

Query: 121 GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 164
           GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS
Sbjct: 121 GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

[Close]

BLAST of Csa2G009350 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-16
Identity = 54/147 (36.73%), Postives = 79/147 (53.74%), Query Frame = 1


Query: 15  SLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGESSPGPLMRCSS---A 74
           SL++ LKS  C++ C R     HHH  +         ++     +S  G  M+  S    
Sbjct: 10  SLQKKLKSRFCIAGCFRT--TNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLT 69

Query: 75  KDKSRSRE-CHDIKDRLPSFISRLGRHG---RRHSASADFHYDALSYSLNFDEGYDEGHV 134
           +  S+S E C  +  R+   +  +G HG   RRH+A  DFHYD  SY+LNFD+G ++ ++
Sbjct: 70  RTLSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTA--DFHYDPSSYALNFDKGDEDDNI 129

Query: 135 DDDFPLRNFSSRLPASPPKSSPSTTTA 155
            D FPLRNFS+RLP SPP S+ +  ++
Sbjct: 130 -DRFPLRNFSARLPHSPPSSAKAADSS 151

[Close]

BLAST of Csa2G009350 vs. TAIR10
Match: AT3G01430.1 (AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1))

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-08
Identity = 29/61 (47.54%), Postives = 32/61 (52.46%), Query Frame = 1


Query: 95  GRHGRRHSASADFHYDALSYSLNFDEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTA 154
           G    R S    F YD LSYSLNFD+G   GH DD+FP R++S R  A    S P +T  
Sbjct: 113 GAMPNRSSDQGKFRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAA---PSLPVSTKC 170

Query: 155 S 156
           S
Sbjct: 173 S 170

[Close]

BLAST of Csa2G009350 vs. TAIR10
Match: AT5G14890.1 (AT5G14890.1 NHL domain-containing protein)

HSP 1 Score: 52.0 bits (123), Expect = 4.1e-07
Identity = 30/76 (39.47%), Postives = 37/76 (48.68%), Query Frame = 1


Query: 89  SFISRLGRH---------GRRHSASADFHYDALSYSLNFDEGYDEGHVDDDFPLRNFSSR 148
           +FI R GR+         G        F YD+ SYSLNFD+G   GH +D+FP R++S R
Sbjct: 668 TFIRRFGRNHCCNGGIDGGCNRPEHVSFRYDSWSYSLNFDDGKQTGHFEDEFPYRDYSMR 727

Query: 149 LPASPPKSSPSTTTAS 156
             A    S P +T  S
Sbjct: 728 FAA---PSLPVSTKCS 740

[Close]

BLAST of Csa2G009350 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.5e-06
Identity = 30/92 (32.61%), Postives = 42/92 (45.65%), Query Frame = 1


Query: 69  SSAKDKSRSRECHDIKDRLP--------SFISRLGRHGRRHSASADFHYDALSYSLNFDE 128
           S+A++      C  +K R+         ++ + +  H    S   DF YD LSY+LNF+ 
Sbjct: 58  STAQELELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFE- 117

Query: 129 GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTT 153
             D    DDD    NF++RLP SP   + S T
Sbjct: 118 --DNVRADDDGSFPNFTARLPQSPVTKTRSAT 146

[Close]

BLAST of Csa2G009350 vs. NCBI nr
Match: gi|778673966|ref|XP_011650096.1| (PREDICTED: NEDD8-specific protease 1 [Cucumis sativus])

HSP 1 Score: 347.1 bits (889), Expect = 1.7e-92
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60
           MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61  SPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDE 120
           SPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDE
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDE 120

Query: 121 GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 164
           GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS
Sbjct: 121 GYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

[Close]

BLAST of Csa2G009350 vs. NCBI nr
Match: gi|659071606|ref|XP_008460859.1| (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 9.6e-83
Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 1


Query: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHR---RMMSISSD 60
           MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHH    R MSISSD
Sbjct: 1   MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61  GESSPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLN 120
           G+S PGPL RCSSAKDKSRSRECHDIKDRLP+FISRLGRHGRRHSASADF YDALSYSLN
Sbjct: 61  GDS-PGPLTRCSSAKDKSRSRECHDIKDRLPNFISRLGRHGRRHSASADFRYDALSYSLN 120

Query: 121 FDEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 164
           FDEGYDEGHVDD+FPLRNFSSRLPASPPKSSPS++TASREMITAFS
Sbjct: 121 FDEGYDEGHVDDEFPLRNFSSRLPASPPKSSPSSSTASREMITAFS 165

[Close]

BLAST of Csa2G009350 vs. NCBI nr
Match: gi|743808138|ref|XP_010928264.1| (PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis])

HSP 1 Score: 109.4 bits (272), Expect = 6.1e-21
Identity = 66/144 (45.83%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 6   EHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGESSPGPL 65
           E    SSPSSLK+ L+SS+C SCC R    G   +               +  E  P  L
Sbjct: 4   ETSSPSSPSSLKQKLRSSICFSCCFRVAPGGEDPV-------------AGAADEERPLSL 63

Query: 66  MRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDEGY-DE 125
           +R SS   +S+++E  +IK+R    ISR+GR  R+   S DF YDALSY+LNFDEG+ DE
Sbjct: 64  IRSSSVWLRSKAQELPEIKNRCRGMISRMGRQRRQ---SGDFGYDALSYALNFDEGFEDE 123

Query: 126 GHVDDDFPLRNFSSRLPASPPKSS 149
              D++F  RNFSSRLPASPP  S
Sbjct: 124 ALADEEFRYRNFSSRLPASPPPPS 131

[Close]

BLAST of Csa2G009350 vs. NCBI nr
Match: gi|720031112|ref|XP_010265711.1| (PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera])

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 68/147 (46.26%), Postives = 90/147 (61.22%), Query Frame = 1


Query: 5   NEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGESSPGP 64
           ++H+ +SS  SLK  L+SSLCLSCC    R                    + + +  P  
Sbjct: 3   DDHRNSSS--SLKHKLRSSLCLSCCFPSGRRE------------------ALEPDEKPR- 62

Query: 65  LMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDEGYDE 124
           L+R SS+  +SR++E  +IK++  + ISR+G+ GRRHS   DF YD LSYSLNFDEG D+
Sbjct: 63  LIRASSSWLRSRTQELPEIKEKCRNLISRIGK-GRRHSG--DFRYDPLSYSLNFDEGIDD 122

Query: 125 GHVDDDFPLRNFSSRLPASPPKSSPST 152
               DDFPLRNFS+RLPASPP S+  T
Sbjct: 123 TQA-DDFPLRNFSARLPASPPMSTTKT 124

[Close]

BLAST of Csa2G009350 vs. NCBI nr
Match: gi|729319987|ref|XP_010533080.1| (PREDICTED: uncharacterized protein LOC104808923 [Tarenaya hassleriana])

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 66/160 (41.25%), Postives = 85/160 (53.12%), Query Frame = 1


Query: 15  SLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISS-------DGESSPGPLMR 74
           SLK+ L+S+LC+S C R+       +HHHHHHHH   +  S        D   SP     
Sbjct: 9   SLKQKLRSTLCISGCFRQ-------IHHHHHHHHHDPLPFSPGDRLSNLDLTPSPRDHQN 68

Query: 75  CSSAKDKSRSRECHDIKDRLPSFISRL--------GRHGRRHSASADFHYDALSYSLNFD 134
            +  K    SR     +D+  S I ++        GRH RRH  + DF YDA+SYSLNFD
Sbjct: 69  HNRIKSPRLSRSLSKSQDKCRSLIQKIGGGPGGGGGRHIRRH--TTDFRYDAVSYSLNFD 128

Query: 135 EGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMI 160
           +G DE    + FP RNFSSRLP SPP S+ ++T    E I
Sbjct: 129 KGDDENL--NQFPFRNFSSRLPHSPPSSAKASTVTEAEKI 157

The following BLAST results are available for this feature:

BLAST of Csa2G009350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL60_CUCSA	1.2e-92	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1	[more]

BLAST of Csa2G009350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35090.1	2.2e-16	36.73	unknown protein	[more]
AT3G01430.1	6.3e-08	47.54	BEST Arabidopsis thaliana protein match is: NHL domain-containing pr...	[more]
AT5G14890.1	4.1e-07	39.47	NHL domain-containing protein	[more]
AT5G11070.1	4.5e-06	32.61	unknown protein	[more]

BLAST of Csa2G009350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673966\|ref\|XP_011650096.1\|	1.7e-92	100.00	PREDICTED: NEDD8-specific protease 1 [Cucumis sativus]	[more]
gi\|659071606\|ref\|XP_008460859.1\|	9.6e-83	90.96	PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]	[more]
gi\|743808138\|ref\|XP_010928264.1\|	6.1e-21	45.83	PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis]	[more]
gi\|720031112\|ref\|XP_010265711.1\|	1.0e-20	46.26	PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera]	[more]
gi\|729319987\|ref\|XP_010533080.1\|	2.3e-20	41.25	PREDICTED: uncharacterized protein LOC104808923 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0048868	pollen tube development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU133505	cucumber EST collection version 3.0	transcribed_cluster
CU168832	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G009350.1	Csa2G009350.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU133505	CU133505	transcribed_cluster
CU168832	CU168832	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 158..163 scor
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 4..159 score: 1.2
None	No IPR available	PANTHER	PTHR33168:SF4	SUBFAMILY NOT NAMED	coord: 4..159 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G009350	Cla013601	Watermelon (97103) v1	cuwmB147
Csa2G009350	MELO3C004442	Melon (DHL92) v3.5.1	cumeB139
Csa2G009350	ClCG02G017250	Watermelon (Charleston Gray)	cuwcgB122
Csa2G009350	Lsi11G003850	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G009350	MELO3C004442.2	Melon (DHL92) v3.6.1	cumedB132
Csa2G009350	Cla97C02G042940	Watermelon (97103) v2	cuwmbB118
Csa2G009350	Bhi06G001576	Wax gourd	cuwgoB138
Csa2G009350	CSPI02G02360	Wild cucumber (PI 183967)	cpicuB065
Csa2G009350	Cucsa.132700	Cucumber (Gy14) v1	cgycuB184
Csa2G009350	CmaCh12G011630	Cucurbita maxima (Rimu)	cmacuB173
Csa2G009350	CmoCh12G011860	Cucurbita moschata (Rifu)	cmocuB157
Csa2G009350	Cp4.1LG07g10920	Cucurbita pepo (Zucchini)	cpecuB812
Csa2G009350	CsGy2G002440	Cucumber (Gy14) v2	cgybcuB056
Csa2G009350	Carg17456	Silver-seed gourd	carcuB0282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G009350	Silver-seed gourd	carcuB0141
Csa2G009350	Silver-seed gourd	carcuB1087
Csa2G009350	Watermelon (97103) v2	cuwmbB151
Csa2G009350	Wax gourd	cuwgoB213
Csa2G009350	Cucumber (Chinese Long) v2	cucuB011
Csa2G009350	Cucumber (Gy14) v1	cgycuB492
Csa2G009350	Cucurbita maxima (Rimu)	cmacuB073
Csa2G009350	Cucurbita maxima (Rimu)	cmacuB115
Csa2G009350	Cucurbita maxima (Rimu)	cmacuB791
Csa2G009350	Cucurbita moschata (Rifu)	cmocuB062
Csa2G009350	Cucurbita moschata (Rifu)	cmocuB104
Csa2G009350	Cucurbita moschata (Rifu)	cmocuB783
Csa2G009350	Melon (DHL92) v3.5.1	cumeB109
Csa2G009350	Watermelon (Charleston Gray)	cuwcgB155
Csa2G009350	Watermelon (97103) v1	cuwmB175
Csa2G009350	Cucurbita pepo (Zucchini)	cpecuB103
Csa2G009350	Cucurbita pepo (Zucchini)	cpecuB667
Csa2G009350	Bottle gourd (USVL1VR-Ls)	culsiB133
Csa2G009350	Cucumber (Gy14) v2	cgybcuB020
Csa2G009350	Melon (DHL92) v3.6.1	cumedB103