CmaCh12G011630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G011630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	BEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
Location	Cma_Chr12 : 9172207 .. 9172993 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCAAAATTAGGTATGTGAAGGCCTAAACGAAGAATTATAACCGTACAAAGAAGAAAAGGCAACGACTCAAAGGCACAATTTAAACCGTGAGAGGTAGAATTACAAGGATACCCTTTTAGGTTTCATTATTGGTTCTTTACACATACATATTCGGGGGCGTTTTCGTAGTTTCACGCTCCACCTACGGAGTATATATAAACGCTCAAACCACTCCGTTTTCTTCCAGCACCATCATTATTATTTGATTTTCTCAGATTTCTCTTACAGCGTTTTTCAGTTACCATTATTCTCTCCAATGGACGATTCGAACGAGCATAAAGAAAATGCCTCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTACTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGGGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCTCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCAGAGCCGTCTTCCTCGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

mRNA sequence

ATGCCATCAAAATTAGATTTCTCTTACAGCGTTTTTCAGTTACCATTATTCTCTCCAATGGACGATTCGAACGAGCATAAAGAAAATGCCTCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTACTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGGGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCTCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCAGAGCCGTCTTCCTCGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

Coding sequence (CDS)

ATGCCATCAAAATTAGATTTCTCTTACAGCGTTTTTCAGTTACCATTATTCTCTCCAATGGACGATTCGAACGAGCATAAAGAAAATGCCTCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTACTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGGGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCTCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCAGAGCCGTCTTCCTCGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

Protein sequence

MPSKLDFSYSVFQLPLFSPMDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSEPSSSETSREMTTAYS

Homology

[Close]

BLAST of CmaCh12G011630 vs. TrEMBL
Match: A0A0A0LL60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.3e-57
Identity = 124/165 (75.15%), Postives = 134/165 (81.21%), Query Frame = 1


Query: 20  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQH---QRRMSFSSDGDV 79
           MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL  H H   +R MS SSDG+ 
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 80  -PTPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYALNF 139
            P PL RCSSAKDKSRSRE  + K D  P FISRLG H RRHS AS DFHYDALSY+LNF
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIK-DRLPSFISRLGRHGRRHS-ASADFHYDALSYSLNF 120

Query: 140 DEGYDEGHVDDAFPLRNFSSRLPASPPKSEPSSSETSREMTTAYS 181
           DEGYDEGHVDD FPLRNFSSRLPASPPKS PS++  SREM TA+S
Sbjct: 121 DEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

[Close]

BLAST of CmaCh12G011630 vs. TrEMBL
Match: G7JHT0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g116500 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-14
Identity = 64/142 (45.07%), Postives = 75/142 (52.82%), Query Frame = 1


Query: 31  SPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTPLTRCSSAKDKS 90
           SP SLK K+KSSLC SCC   HR                      V   + R SS +  +
Sbjct: 11  SPHSLKYKLKSSLCFSCCFSHHR----------------------VKPRIVRSSSLRTHN 70

Query: 91  RSRESPESKTDWRPH-------FISRLGLHSRRHSSASVDFHYDALSYALNF-DEGYDEG 150
           R+  +     D  PH       FISR+  H RRHS+   DFHYDALSYALNF D+  DE 
Sbjct: 71  RNHNNNSRSIDL-PHLKEKCTNFISRIVHHRRRHSA---DFHYDALSYALNFEDDANDEK 123

Query: 151 HVDDAFPLRNFSSRLPASPPKS 165
            VDD   LR+FS+RLPASPP S
Sbjct: 131 SVDD---LRSFSARLPASPPLS 123

[Close]

BLAST of CmaCh12G011630 vs. TrEMBL
Match: A0A068USA7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031261001 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 60/145 (41.38%), Postives = 77/145 (53.10%), Query Frame = 1


Query: 30  ASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTPLTRCSSAKDK 89
           ASP SLK+KIK SLC  CC RRH +GH          R    S    PTP      + DK
Sbjct: 10  ASPHSLKSKIKDSLCFYCCFRRHHHGH----------RQVLDSPTGPPTPPL---PSDDK 69

Query: 90  S-----RSRESPESKTDWRPHFISRLG-------LHSRRHSSASVDFHYDALSYALNFDE 149
                 ++R++ + K D +   +   G        H +RH SA  +F YD LSY+LNF +
Sbjct: 70  PTLLWLKTRKAHDLKDDIKDKCMMVFGRVGNGINRHHKRHPSA--EFRYDPLSYSLNFAD 129

Query: 150 GYDEGHVDDAFPLRNFSSRLPASPP 163
           G+DE   DD +PLRNFS+RLP S P
Sbjct: 130 GFDE---DDEYPLRNFSARLPPSQP 136

[Close]

BLAST of CmaCh12G011630 vs. TrEMBL
Match: R0F954_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007013mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 61/156 (39.10%), Postives = 83/156 (53.21%), Query Frame = 1


Query: 28  ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTPLTRCSSAK 87
           E+ S  SLK K+KS  C++ C R   + HH +   +     S S+  D  T   R    K
Sbjct: 4   ESMSHLSLKKKLKSRFCMAGCFRTSNHHHHDVPDDRPSSPTSPSAATDKTTQSPRGGGIK 63

Query: 88  DKSRSRESPESKTDWRPH-FISRLG----------LHSRRHSSASVDFHYDALSYALNFD 147
            KS       SK+  +   FI R+G           H RRH++   DFHYD  SYALNFD
Sbjct: 64  TKSPRLNRTLSKSQEKCRSFIHRMGGGVSGVGGHGKHVRRHTT---DFHYDPSSYALNFD 123

Query: 148 EGYDEGHVDDAFPLRNFSSRLPASPPKSEPSSSETS 173
           +G ++ ++ D FPLRNFS+RLP SPP S  + +E+S
Sbjct: 124 KGDEDDNI-DRFPLRNFSARLPRSPPSSAKAGTESS 155

[Close]

BLAST of CmaCh12G011630 vs. TrEMBL
Match: A0A022R4K3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016005mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 1


Query: 20  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTP 79
           M ++ E    ASP SLK+K+K SLCLSCC RR    H  LQ        S  SD +    
Sbjct: 3   MMNAAEINNPASPPSLKSKLKRSLCLSCCFRRRNRRHLILQ----SPPPSPPSDDNPALI 62

Query: 80  LTRCSSAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYALNFDEGY 139
               +   D S S    + +T      +   G+  +RHS  SV+F YD LSYALNF++G+
Sbjct: 63  WVGTAGPHDHSLSEIKEKCRT-----MLGLSGVKHKRHS--SVEFRYDPLSYALNFEDGF 122

Query: 140 DEGHVDDAFPLRNFSSRLPASP 162
           D    DD  PL+NFS+RLP SP
Sbjct: 123 D---FDDEAPLKNFSARLPRSP 130

[Close]

BLAST of CmaCh12G011630 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-11
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 1


Query: 28  ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTPLTRCSSAK 87
           E  +  SL+ K+KS  C++ C R   N HHH            +++    +P       K
Sbjct: 4   ETMTNLSLQKKLKSRFCIAGCFRT-TNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTK 63

Query: 88  DKSRSRESPESKTDWRPHFISRLG----------LHSRRHSSASVDFHYDALSYALNFDE 147
               +R   +S    +   I R+G           H RRH++   DFHYD  SYALNFD+
Sbjct: 64  SPRLTRTLSKSHEKCKS-LIHRMGGGVGGVGGHGKHIRRHTA---DFHYDPSSYALNFDK 123

Query: 148 GYDEGHVDDAFPLRNFSSRLPASPPKSEPSSSET 172
           G ++ ++ D FPLRNFS+RLP SPP S  ++  +
Sbjct: 124 GDEDDNI-DRFPLRNFSARLPHSPPSSAKAADSS 151

[Close]

BLAST of CmaCh12G011630 vs. TAIR10
Match: AT3G01430.1 (AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1))

HSP 1 Score: 49.7 bits (117), Expect = 2.2e-06
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 1


Query: 118 SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPA 160
           SS    F YD LSY+LNFD+G   GH DD FP R++S R  A
Sbjct: 119 SSDQGKFRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAA 160

[Close]

BLAST of CmaCh12G011630 vs. NCBI nr
Match: gi|659071606|ref|XP_008460859.1| (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.8e-58
Identity = 126/167 (75.45%), Postives = 134/167 (80.24%), Query Frame = 1


Query: 20  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQ------RRMSFSSD 79
           MDDSNEHK N+S S+LK  +KSSLCLSCCLR+HRNGHHHL  H H       RRMS SSD
Sbjct: 1   MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 80  GDVPTPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYAL 139
           GD P PLTRCSSAKDKSRSRE  + K D  P+FISRLG H RRHS AS DF YDALSY+L
Sbjct: 61  GDSPGPLTRCSSAKDKSRSRECHDIK-DRLPNFISRLGRHGRRHS-ASADFRYDALSYSL 120

Query: 140 NFDEGYDEGHVDDAFPLRNFSSRLPASPPKSEPSSSETSREMTTAYS 181
           NFDEGYDEGHVDD FPLRNFSSRLPASPPKS PSSS  SREM TA+S
Sbjct: 121 NFDEGYDEGHVDDEFPLRNFSSRLPASPPKSSPSSSTASREMITAFS 165

[Close]

BLAST of CmaCh12G011630 vs. NCBI nr
Match: gi|778673966|ref|XP_011650096.1| (PREDICTED: NEDD8-specific protease 1 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 7.6e-57
Identity = 124/165 (75.15%), Postives = 134/165 (81.21%), Query Frame = 1


Query: 20  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQH---QRRMSFSSDGDV 79
           MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL  H H   +R MS SSDG+ 
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 80  -PTPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYALNF 139
            P PL RCSSAKDKSRSRE  + K D  P FISRLG H RRHS AS DFHYDALSY+LNF
Sbjct: 61  SPGPLMRCSSAKDKSRSRECHDIK-DRLPSFISRLGRHGRRHS-ASADFHYDALSYSLNF 120

Query: 140 DEGYDEGHVDDAFPLRNFSSRLPASPPKSEPSSSETSREMTTAYS 181
           DEGYDEGHVDD FPLRNFSSRLPASPPKS PS++  SREM TA+S
Sbjct: 121 DEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS 163

[Close]

BLAST of CmaCh12G011630 vs. NCBI nr
Match: gi|743808138|ref|XP_010928264.1| (PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis])

HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17
Identity = 65/139 (46.76%), Postives = 83/139 (59.71%), Query Frame = 1


Query: 25  EHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTPLTRCS 84
           E    +SPSSLK K++SS+C SCC R    G         +  ++ ++D + P  L R S
Sbjct: 4   ETSSPSSPSSLKQKLRSSICFSCCFRVAPGG---------EDPVAGAADEERPLSLIRSS 63

Query: 85  SAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYALNFDEGY-DEGH 144
           S   +S+++E PE K   R   ISR+G   R+    S DF YDALSYALNFDEG+ DE  
Sbjct: 64  SVWLRSKAQELPEIKNRCRG-MISRMGRQRRQ----SGDFGYDALSYALNFDEGFEDEAL 123

Query: 145 VDDAFPLRNFSSRLPASPP 163
            D+ F  RNFSSRLPASPP
Sbjct: 124 ADEEFRYRNFSSRLPASPP 128

[Close]

BLAST of CmaCh12G011630 vs. NCBI nr
Match: gi|720031112|ref|XP_010265711.1| (PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera])

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 67/140 (47.86%), Postives = 80/140 (57.14%), Query Frame = 1


Query: 25  EHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTPLTRCS 84
           E     S SSLK K++SSLCLSCC    R                 + + D    L R S
Sbjct: 2   EDDHRNSSSSLKHKLRSSLCLSCCFPSGRRE---------------ALEPDEKPRLIRAS 61

Query: 85  SAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYALNFDEGYDEGHV 144
           S+  +SR++E PE K   R + ISR+G   RRHS    DF YD LSY+LNFDEG D+   
Sbjct: 62  SSWLRSRTQELPEIKEKCR-NLISRIG-KGRRHSG---DFRYDPLSYSLNFDEGIDDTQA 120

Query: 145 DDAFPLRNFSSRLPASPPKS 165
           DD FPLRNFS+RLPASPP S
Sbjct: 122 DD-FPLRNFSARLPASPPMS 120

[Close]

BLAST of CmaCh12G011630 vs. NCBI nr
Match: gi|1012002310|ref|XP_015934323.1| (PREDICTED: uncharacterized protein LOC107460476 [Arachis duranensis])

HSP 1 Score: 89.4 bits (220), Expect = 7.2e-15
Identity = 65/150 (43.33%), Postives = 81/150 (54.00%), Query Frame = 1


Query: 25  EHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPTPLTRCS 84
           E     SP SLK K++SSLCLSCC  +    HHH                 V   + R +
Sbjct: 4   EDSSPGSPHSLKHKLRSSLCLSCCFPQIL--HHHR----------------VQPRIVRSA 63

Query: 85  SAKDKSRSRESPESKTDWRPHFISRLGLHSRRHSSASVDFHYDALSYALNF-DEGYDEGH 144
           S   KSRS + P+ K     +FI+R+G H   H   S DFHYDA SYALNF DE  D+  
Sbjct: 64  SLHSKSRSNDFPQIKEKCC-NFIARIGRHHHHHRRHSADFHYDAFSYALNFEDEASDDRS 123

Query: 145 VDDAFPLRNFSSRLPAS-PPKSEPSSSETS 173
           VDD   LR+FS+RLP S PPK  P  ++T+
Sbjct: 124 VDD---LRSFSARLPQSPPPKESPVPAKTA 131

The following BLAST results are available for this feature:

BLAST of CmaCh12G011630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh12G011630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL60_CUCSA	5.3e-57	75.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1	[more]
G7JHT0_MEDTR	3.2e-14	45.07	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g116500 PE=4 SV=1	[more]
A0A068USA7_COFCA	1.6e-13	41.38	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031261001 PE=4 SV=1	[more]
R0F954_9BRAS	1.0e-12	39.10	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007013mg PE=4 SV=1	[more]
A0A022R4K3_ERYGU	1.8e-12	41.55	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016005mg PE=4 SV=1	[more]

BLAST of CmaCh12G011630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35090.1	3.9e-11	33.77	unknown protein	[more]
AT3G01430.1	2.2e-06	54.76	BEST Arabidopsis thaliana protein match is: NHL domain-containing pr...	[more]

BLAST of CmaCh12G011630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071606\|ref\|XP_008460859.1\|	1.8e-58	75.45	PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]	[more]
gi\|778673966\|ref\|XP_011650096.1\|	7.6e-57	75.15	PREDICTED: NEDD8-specific protease 1 [Cucumis sativus]	[more]
gi\|743808138\|ref\|XP_010928264.1\|	4.5e-17	46.76	PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis]	[more]
gi\|720031112\|ref\|XP_010265711.1\|	2.9e-16	47.86	PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera]	[more]
gi\|1012002310\|ref\|XP_015934323.1\|	7.2e-15	43.33	PREDICTED: uncharacterized protein LOC107460476 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0048868	pollen tube development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G011630.1	CmaCh12G011630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 23..178 score: 7.8
None	No IPR available	PANTHER	PTHR33168:SF4	SUBFAMILY NOT NAMED	coord: 23..178 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G011630	Cucsa.132700	Cucumber (Gy14) v1	cgycmaB0364
CmaCh12G011630	Cla013601	Watermelon (97103) v1	cmawmB170
CmaCh12G011630	Csa2G009350	Cucumber (Chinese Long) v2	cmacuB173
CmaCh12G011630	MELO3C004442	Melon (DHL92) v3.5.1	cmameB172
CmaCh12G011630	ClCG02G017250	Watermelon (Charleston Gray)	cmawcgB156
CmaCh12G011630	CSPI02G02360	Wild cucumber (PI 183967)	cmacpiB174
CmaCh12G011630	CmoCh12G011860	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G011630	Lsi11G003850	Bottle gourd (USVL1VR-Ls)	cmalsiB159
CmaCh12G011630	Cp4.1LG07g10920	Cucurbita pepo (Zucchini)	cmacpeB206
CmaCh12G011630	MELO3C004442.2	Melon (DHL92) v3.6.1	cmamedB187
CmaCh12G011630	CsaV3_2G003540	Cucumber (Chinese Long) v3	cmacucB0202
CmaCh12G011630	Cla97C02G042940	Watermelon (97103) v2	cmawmbB175
CmaCh12G011630	Bhi06G001576	Wax gourd	cmawgoB0177
CmaCh12G011630	CsGy2G002440	Cucumber (Gy14) v2	cgybcmaB178
CmaCh12G011630	Carg17456	Silver-seed gourd	carcmaB0355

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G011630	Cucumber (Chinese Long) v3	cmacucB0187
CmaCh12G011630	Watermelon (97103) v2	cmawmbB189
CmaCh12G011630	Cucurbita maxima (Rimu)	cmacmaB088
CmaCh12G011630	Cucurbita maxima (Rimu)	cmacmaB124
CmaCh12G011630	Cucurbita maxima (Rimu)	cmacmaB190
CmaCh12G011630	Cucurbita moschata (Rifu)	cmacmoB170
CmaCh12G011630	Cucurbita moschata (Rifu)	cmacmoB174
CmaCh12G011630	Cucurbita moschata (Rifu)	cmacmoB190
CmaCh12G011630	Wild cucumber (PI 183967)	cmacpiB162
CmaCh12G011630	Cucumber (Chinese Long) v2	cmacuB162
CmaCh12G011630	Melon (DHL92) v3.5.1	cmameB155
CmaCh12G011630	Cucurbita pepo (Zucchini)	cmacpeB171
CmaCh12G011630	Bottle gourd (USVL1VR-Ls)	cmalsiB183
CmaCh12G011630	Melon (DHL92) v3.6.1	cmamedB169
CmaCh12G011630	Silver-seed gourd	carcmaB1074
CmaCh12G011630	Silver-seed gourd	carcmaB1483