CsGy1G025220 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G025220
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 24174120 .. 24174506 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

mRNA sequence

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Coding sequence (CDS)

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Protein sequence

MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGFKWMKNNKC
Homology
[Close]
BLAST of CsGy1G025220 vs. NCBI nr
Match: KGN66017.1 (hypothetical protein Csa_1G561970 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 7.5e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 129
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

[Close]
BLAST of CsGy1G025220 vs. TrEMBL
Match: tr|A0A0A0LYX3|A0A0A0LYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.0e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 129
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

The following BLAST results are available for this feature:
BLAST of CsGy1G025220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66017.17.5e-63100.00hypothetical protein Csa_1G561970 [Cucumis sativus][more]
BLAST of CsGy1G025220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G025220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G025220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYX3|A0A0A0LYX3_CUCSA5.0e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G025220.1CsGy1G025220.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 89..125
e-value: 5.4E-9
score: 35.6