ClCG03G017660 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G017660
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Genomic DNA, chromosome 3, P1 clone: MDC16
Location	CG_Chr03 : 32774371 .. 32774658 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACGTTGCGACGCCACTCGGGAGCAGCCAGTTGCCGGAGCTCCACCGGGGTTGGGACCATGGAAACAATTAAAGAAATTAGATCTCGGAAGGAACGAGTGGTCGAGGCAACGAAATCGTCGAAGAAATCGATGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGGCGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAAGTGAAGAATTCCATTAAGGAAGGCTTCAAATGGATGAAGAAAAAATGTTCTAAAATCATCTCTGGATTTTAA

mRNA sequence

ATGGAGACGTTGCGACGCCACTCGGGAGCAGCCAGTTGCCGGAGCTCCACCGGGGTTGGGACCATGGAAACAATTAAAGAAATTAGATCTCGGAAGGAACGAGTGGTCGAGGCAACGAAATCGTCGAAGAAATCGATGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGGCGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAAGTGAAGAATTCCATTAAGGAAGGCTTCAAATGGATGAAGAAAAAATGTTCTAAAATCATCTCTGGATTTTAA

Coding sequence (CDS)

ATGGAGACGTTGCGACGCCACTCGGGAGCAGCCAGTTGCCGGAGCTCCACCGGGGTTGGGACCATGGAAACAATTAAAGAAATTAGATCTCGGAAGGAACGAGTGGTCGAGGCAACGAAATCGTCGAAGAAATCGATGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGGCGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAAGTGAAGAATTCCATTAAGGAAGGCTTCAAATGGATGAAGAAAAAATGTTCTAAAATCATCTCTGGATTTTAA

Protein sequence

METLRRHSGAASCRSSTGVGTMETIKEIRSRKERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISGF

Homology

[Close]

BLAST of ClCG03G017660 vs. TrEMBL
Match: A0A0A0LYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561970 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-14
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 5   RRHSGAA-SCRSSTGVGTMETIKEIRSRKERVVEATKSSKKSMEKWW-NDPENKRK-RRV 64
           R++ GAA   R      T+ETIKEIRS +ERVVEATK  KKS++KWW N+ ENKRK  RV
Sbjct: 40  RQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRV 99

Query: 65  AKYKFYAVD-AKVKNSIKEGFKWMK-KKC 89
           AKYK Y ++ +K+K SI  GFKWMK  KC
Sbjct: 100 AKYKLYDLNSSKLKISINNGFKWMKNNKC 128

[Close]

BLAST of ClCG03G017660 vs. TrEMBL
Match: A0A0A0L7N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.4e-13
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 32  KERVVEATKSSKKSMEK-WWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSK 91
           K+ V + ++ SK  M+K WW  PE +R++RVAKYK Y V+ KVK SIK+G +W+K KCS+
Sbjct: 45  KQYVTKTSEPSKSCMKKPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSR 104

Query: 92  IISGF 96
           IISGF
Sbjct: 105 IISGF 109

[Close]

BLAST of ClCG03G017660 vs. TrEMBL
Match: A0A072U413_MEDTR (DUF3511 domain protein OS=Medicago truncatula GN=MTR_7g112020 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 25  IKEIRSRKERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWM 84
           +K   + +ER V      KKSM  WWNDPE KRKRRVA+YKFY  + K+K S+K+GF+W+
Sbjct: 56  VKNYETLRERSVV---KKKKSMS-WWNDPERKRKRRVARYKFYGTEGKLKRSLKKGFQWL 115

Query: 85  KKKCSKIISGF 96
           K KC KI + F
Sbjct: 116 KVKCIKISASF 122

[Close]

BLAST of ClCG03G017660 vs. TrEMBL
Match: B9RFH1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 49 WWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISGF 96
          WWN PE KRK+RVA+YKFYAV+ KVK SIK+GF+W KK CS+I+ GF
Sbjct: 49 WWNAPETKRKKRVAQYKFYAVEGKVKISIKKGFRWFKKTCSRIVHGF 95

[Close]

BLAST of ClCG03G017660 vs. TrEMBL
Match: A0A078G1D4_BRANA (BnaAnng02720D protein OS=Brassica napus GN=BnaAnng02720D PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 41  SSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISG 95
           S  K+++ WWNDPE KRKRRVAKYK Y+ + KVK S+K+ +KW+K +C+KII G
Sbjct: 70  SHSKTLKGWWNDPEIKRKRRVAKYKLYSAEGKVKKSLKKSYKWIKIQCAKIIHG 123

[Close]

BLAST of ClCG03G017660 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 73.2 bits (178), Expect = 9.9e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1


Query: 30  SRKERVVEATKSSKKS--MEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKK 89
           S K+  V   +SS  S   + WWNDPE KRKRRVAKYK Y+ + K+K ++++ +KW+K +
Sbjct: 57  SYKDMPVRPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQ 116

Query: 90  CSKIISG 95
           CSKII G
Sbjct: 117 CSKIIHG 123

[Close]

BLAST of ClCG03G017660 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-09
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1


Query: 51  NDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISGF 96
           +D E KRK+R+A+YK Y V+ KVK+++K GF+W+K KC +I+  F
Sbjct: 66  SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of ClCG03G017660 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-08
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1


Query: 52  DPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISG 95
           D E KRK+R+A YK YA++ KVK+++K+GF W+K + S II G
Sbjct: 68  DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of ClCG03G017660 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 54.3 bits (129), Expect = 4.8e-08
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1


Query: 40  KSSKKSMEKWWN--DPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIIS 94
           K  + S    W   DP+ +RK+RV  Y+ Y V+ K+K S ++ FKW+K KC+K+++
Sbjct: 61  KKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]

BLAST of ClCG03G017660 vs. TAIR10
Match: AT3G13910.1 (AT3G13910.1 Protein of unknown function (DUF3511))

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 31 RKERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMK 86
          + + V  A +++ +S    ++DPE++RKRRVA YK Y+V+ K+K SI++ FKW K
Sbjct: 44 KSKSVPNADRAASRSWS--FSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFK 96

[Close]

BLAST of ClCG03G017660 vs. NCBI nr
Match: gi|700210921|gb|KGN66017.1| (hypothetical protein Csa_1G561970 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-14
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 5   RRHSGAA-SCRSSTGVGTMETIKEIRSRKERVVEATKSSKKSMEKWW-NDPENKRK-RRV 64
           R++ GAA   R      T+ETIKEIRS +ERVVEATK  KKS++KWW N+ ENKRK  RV
Sbjct: 40  RQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRV 99

Query: 65  AKYKFYAVD-AKVKNSIKEGFKWMK-KKC 89
           AKYK Y ++ +K+K SI  GFKWMK  KC
Sbjct: 100 AKYKLYDLNSSKLKISINNGFKWMKNNKC 128

[Close]

BLAST of ClCG03G017660 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-13
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 33  ERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKII 92
           +R V  T    K  + WW  PE KR++RVAKYK YAV+ KVK+SIK+GF+W+K KCS+II
Sbjct: 45  KRYVTKTWEPSKMKKSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRII 104

Query: 93  SGF 96
           SGF
Sbjct: 105 SGF 107

[Close]

BLAST of ClCG03G017660 vs. NCBI nr
Match: gi|700201003|gb|KGN56136.1| (hypothetical protein Csa_3G077700 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 32  KERVVEATKSSKKSMEK-WWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSK 91
           K+ V + ++ SK  M+K WW  PE +R++RVAKYK Y V+ KVK SIK+G +W+K KCS+
Sbjct: 45  KQYVTKTSEPSKSCMKKPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSR 104

Query: 92  IISGF 96
           IISGF
Sbjct: 105 IISGF 109

[Close]

BLAST of ClCG03G017660 vs. NCBI nr
Match: gi|922347079|ref|XP_013450451.1| (DUF3511 domain protein [Medicago truncatula])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 25  IKEIRSRKERVVEATKSSKKSMEKWWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWM 84
           +K   + +ER V      KKSM  WWNDPE KRKRRVA+YKFY  + K+K S+K+GF+W+
Sbjct: 56  VKNYETLRERSVV---KKKKSMS-WWNDPERKRKRRVARYKFYGTEGKLKRSLKKGFQWL 115

Query: 85  KKKCSKIISGF 96
           K KC KI + F
Sbjct: 116 KVKCIKISASF 122

[Close]

BLAST of ClCG03G017660 vs. NCBI nr
Match: gi|223548451|gb|EEF49942.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 49 WWNDPENKRKRRVAKYKFYAVDAKVKNSIKEGFKWMKKKCSKIISGF 96
          WWN PE KRK+RVA+YKFYAV+ KVK SIK+GF+W KK CS+I+ GF
Sbjct: 49 WWNAPETKRKKRVAQYKFYAVEGKVKISIKKGFRWFKKTCSRIVHGF 95

The following BLAST results are available for this feature:

BLAST of ClCG03G017660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYX3_CUCSA	6.5e-14	59.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561970 PE=4 SV=1	[more]
A0A0A0L7N5_CUCSA	9.4e-13	55.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077700 PE=4 SV=1	[more]
A0A072U413_MEDTR	1.2e-12	53.52	DUF3511 domain protein OS=Medicago truncatula GN=MTR_7g112020 PE=4 SV=1	[more]
B9RFH1_RICCO	1.6e-12	70.21	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1	[more]
A0A078G1D4_BRANA	7.9e-12	59.26	BnaAnng02720D protein OS=Brassica napus GN=BnaAnng02720D PE=4 SV=1	[more]

BLAST of ClCG03G017660 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	9.9e-14	50.75	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	1.9e-09	51.11	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	3.6e-08	53.49	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	4.8e-08	39.29	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	1.4e-07	43.64	Protein of unknown function (DUF3511)	[more]

BLAST of ClCG03G017660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210921\|gb\|KGN66017.1\|	9.3e-14	59.55	hypothetical protein Csa_1G561970 [Cucumis sativus]	[more]
gi\|659126920\|ref\|XP_008463430.1\|	1.6e-13	58.73	PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo]	[more]
gi\|700201003\|gb\|KGN56136.1\|	1.3e-12	55.38	hypothetical protein Csa_3G077700 [Cucumis sativus]	[more]
gi\|922347079\|ref\|XP_013450451.1\|	1.8e-12	53.52	DUF3511 domain protein [Medicago truncatula]	[more]
gi\|223548451\|gb\|EEF49942.1\|	2.3e-12	70.21	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G017660.1	ClCG03G017660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 50..94 score: 2.8
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 29..95 score: 3.8
None	No IPR available	PANTHER	PTHR33193:SF3	SUBFAMILY NOT NAMED	coord: 29..95 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G017660	Csa1G561970	Cucumber (Chinese Long) v2	cuwcgB050
ClCG03G017660	MELO3C015262	Melon (DHL92) v3.5.1	mewcgB245
ClCG03G017660	Cla005166	Watermelon (97103) v1	wcgwmB224
ClCG03G017660	Bhi02G001809	Wax gourd	wcgwgoB363
ClCG03G017660	CSPI01G25930	Wild cucumber (PI 183967)	cpiwcgB049
ClCG03G017660	Lsi06G000630	Bottle gourd (USVL1VR-Ls)	lsiwcgB364
ClCG03G017660	CsGy1G025220	Cucumber (Gy14) v2	cgybwcgB047
ClCG03G017660	MELO3C015262.2	Melon (DHL92) v3.6.1	medwcgB237
ClCG03G017660	CsaV3_1G038330	Cucumber (Chinese Long) v3	cucwcgB053

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G017660	Watermelon (97103) v2	wcgwmbB186
ClCG03G017660	Watermelon (Charleston Gray)	wcgwcgB125
ClCG03G017660	Cucumber (Gy14) v1	cgywcgB037
ClCG03G017660	Cucurbita maxima (Rimu)	cmawcgB055
ClCG03G017660	Cucurbita maxima (Rimu)	cmawcgB114
ClCG03G017660	Cucurbita moschata (Rifu)	cmowcgB046
ClCG03G017660	Cucurbita moschata (Rifu)	cmowcgB102
ClCG03G017660	Melon (DHL92) v3.5.1	mewcgB381
ClCG03G017660	Cucumber (Chinese Long) v2	cuwcgB135
ClCG03G017660	Watermelon (97103) v1	wcgwmB242
ClCG03G017660	Cucurbita pepo (Zucchini)	cpewcgB109
ClCG03G017660	Cucurbita pepo (Zucchini)	cpewcgB328
ClCG03G017660	Cucurbita pepo (Zucchini)	cpewcgB604
ClCG03G017660	Bottle gourd (USVL1VR-Ls)	lsiwcgB105