CsaV3_1G038330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G038330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 24097795 .. 24098181 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCACGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

mRNA sequence

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCACGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Coding sequence (CDS)

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCACGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Protein sequence

MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGFKWMKNNKC
Homology
[Close]
BLAST of CsaV3_1G038330 vs. NCBI nr
Match: KGN66017.1 (hypothetical protein Csa_1G561970 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 4.4e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 129
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

[Close]
BLAST of CsaV3_1G038330 vs. TrEMBL
Match: tr|A0A0A0LYX3|A0A0A0LYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.9e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 129
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

The following BLAST results are available for this feature:
BLAST of CsaV3_1G038330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66017.14.4e-63100.00hypothetical protein Csa_1G561970 [Cucumis sativus][more]
BLAST of CsaV3_1G038330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G038330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G038330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYX3|A0A0A0LYX3_CUCSA2.9e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G038330.1CsaV3_1G038330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 89..125
e-value: 5.4E-9
score: 35.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G038330CSPI01G25930Wild cucumber (PI 183967)cpicucB000
CsaV3_1G038330CsGy1G025220Cucumber (Gy14) v2cgybcucB001
CsaV3_1G038330Cla005166Watermelon (97103) v1cucwmB028
CsaV3_1G038330MELO3C015262Melon (DHL92) v3.5.1cucmeB042
CsaV3_1G038330ClCG03G017660Watermelon (Charleston Gray)cucwcgB053
CsaV3_1G038330Lsi06G000630Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G038330MELO3C015262.2Melon (DHL92) v3.6.1cucmedB039
CsaV3_1G038330Bhi02G001809Wax gourdcucwgoB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G038330Cucumber (Chinese Long) v3cuccucB013
CsaV3_1G038330Cucumber (Gy14) v2cgybcucB062
CsaV3_1G038330Cucumber (Gy14) v1cgycucB094
CsaV3_1G038330Cucumber (Gy14) v1cgycucB035
CsaV3_1G038330Cucurbita maxima (Rimu)cmacucB0069
CsaV3_1G038330Cucurbita maxima (Rimu)cmacucB0184
CsaV3_1G038330Cucurbita maxima (Rimu)cmacucB0922
CsaV3_1G038330Cucurbita moschata (Rifu)cmocucB0058
CsaV3_1G038330Cucurbita moschata (Rifu)cmocucB0097
CsaV3_1G038330Cucurbita moschata (Rifu)cmocucB0169
CsaV3_1G038330Cucurbita moschata (Rifu)cmocucB0914
CsaV3_1G038330Cucurbita pepo (Zucchini)cpecucB0100
CsaV3_1G038330Cucurbita pepo (Zucchini)cpecucB0432
CsaV3_1G038330Cucurbita pepo (Zucchini)cpecucB0807
CsaV3_1G038330Cucurbita pepo (Zucchini)cpecucB0998
CsaV3_1G038330Wild cucumber (PI 183967)cpicucB078
CsaV3_1G038330Bottle gourd (USVL1VR-Ls)cuclsiB014
CsaV3_1G038330Melon (DHL92) v3.5.1cucmeB077
CsaV3_1G038330Melon (DHL92) v3.6.1cucmedB071
CsaV3_1G038330Watermelon (Charleston Gray)cucwcgB032
CsaV3_1G038330Watermelon (Charleston Gray)cucwcgB042
CsaV3_1G038330Watermelon (97103) v1cucwmB017
CsaV3_1G038330Watermelon (97103) v1cucwmB077
CsaV3_1G038330Watermelon (97103) v2cucwmbB044