Lsi06G000630 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DUF3511 domain protein
Location	chr06 : 543462 .. 543827 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCCTCAACAACATAAAAAGCCTCAAAATTTCCAATTCCCACATTATCATCAAACAACGACGGGCGATGGAGATGGGGCGACGATACTCGGGAGTGGCGAGTTGCCGGAGCTCCGGTGGGATTGGGAACATGGGATTGGAAACGATTAAAGAAATCAGATCTCGGAAGGAACGAGTGGTTGAGGCAACGAAATCGTCAAAGAAATCATTGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGACGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAACTTAAGAATTCCATTAACAAAGGCTTCAAATGGATGAAGAACAAATGTGCTAAAATCATCTCTGGATTTTAA

mRNA sequence

ATGGATTCCCTCAACAACATAAAAAGCCTCAAAATTTCCAATTCCCACATTATCATCAAACAACGACGGGCGATGGAGATGGGGCGACGATACTCGGGAGTGGCGAGTTGCCGGAGCTCCGGTGGGATTGGGAACATGGGATTGGAAACGATTAAAGAAATCAGATCTCGGAAGGAACGAGTGGTTGAGGCAACGAAATCGTCAAAGAAATCATTGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGACGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAACTTAAGAATTCCATTAACAAAGGCTTCAAATGGATGAAGAACAAATGTGCTAAAATCATCTCTGGATTTTAA

Coding sequence (CDS)

ATGGATTCCCTCAACAACATAAAAAGCCTCAAAATTTCCAATTCCCACATTATCATCAAACAACGACGGGCGATGGAGATGGGGCGACGATACTCGGGAGTGGCGAGTTGCCGGAGCTCCGGTGGGATTGGGAACATGGGATTGGAAACGATTAAAGAAATCAGATCTCGGAAGGAACGAGTGGTTGAGGCAACGAAATCGTCAAAGAAATCATTGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGACGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAACTTAAGAATTCCATTAACAAAGGCTTCAAATGGATGAAGAACAAATGTGCTAAAATCATCTCTGGATTTTAA

Protein sequence

MDSLNNIKSLKISNSHIIIKQRRAMEMGRRYSGVASCRSSGGIGNMGLETIKEIRSRKERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISGF

Homology

[Close]

BLAST of Lsi06G000630 vs. TrEMBL
Match: A0A0A0LYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561970 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-14
Identity = 67/129 (51.94%), Postives = 80/129 (62.02%), Query Frame = 1


Query: 1   MDSLNNIKSLKISNSHII-------IKQRRAMEMG----RRYSGVASCRSSGGIGNMGLE 60
           MDSLNN   +  S +H         IKQ    +M     R+Y G A  +    +    LE
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETT-LE 60

Query: 61  TIKEIRSRKERVVEATKSSKKSLEKWW-NDPENKRK-RRVAKYKFYAVD-AKLKNSINKG 115
           TIKEIRS +ERVVEATK  KKS++KWW N+ ENKRK  RVAKYK Y ++ +KLK SIN G
Sbjct: 61  TIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNG 120

[Close]

BLAST of Lsi06G000630 vs. TrEMBL
Match: A0A151TW82_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_010537 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1


Query: 75  WWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIIS 120
           WWNDPENKRKRRVAKYK YA + KLK+S+ KG +W KNKC KI++
Sbjct: 65  WWNDPENKRKRRVAKYKLYAKEGKLKHSVKKGLRWFKNKCIKIVN 109

[Close]

BLAST of Lsi06G000630 vs. TrEMBL
Match: A0A072U413_MEDTR (DUF3511 domain protein OS=Medicago truncatula GN=MTR_7g112020 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-11
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 59  ERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKII 118
           E + E +   KK    WWNDPE KRKRRVA+YKFY  + KLK S+ KGF+W+K KC KI 
Sbjct: 60  ETLRERSVVKKKKSMSWWNDPERKRKRRVARYKFYGTEGKLKRSLKKGFQWLKVKCIKIS 119

Query: 119 SGF 122
           + F
Sbjct: 120 ASF 122

[Close]

BLAST of Lsi06G000630 vs. TrEMBL
Match: M4FHE8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 67  SSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISG 121
           S  K+L+ WWNDPE KRKRRVAKYK Y+ + K+K S+ K +KW+K +CAKII G
Sbjct: 70  SHSKTLKGWWNDPEIKRKRRVAKYKLYSAEGKVKKSLKKSYKWIKIQCAKIIHG 123

[Close]

BLAST of Lsi06G000630 vs. TrEMBL
Match: A0A078G1D4_BRANA (BnaAnng02720D protein OS=Brassica napus GN=BnaAnng02720D PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 67  SSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISG 121
           S  K+L+ WWNDPE KRKRRVAKYK Y+ + K+K S+ K +KW+K +CAKII G
Sbjct: 70  SHSKTLKGWWNDPEIKRKRRVAKYKLYSAEGKVKKSLKKSYKWIKIQCAKIIHG 123

[Close]

BLAST of Lsi06G000630 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1


Query: 56  SRKERVVEATKSSKKS--LEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNK 115
           S K+  V   +SS  S   + WWNDPE KRKRRVAKYK Y+ + K+K ++ K +KW+K +
Sbjct: 57  SYKDMPVRPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQ 116

Query: 116 CAKIISG 121
           C+KII G
Sbjct: 117 CSKIIHG 123

[Close]

BLAST of Lsi06G000630 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 33/104 (31.73%), Postives = 50/104 (48.08%), Query Frame = 1


Query: 37  CRSSGGIGNMGLETIKEIRSRKERVVEATKSSKKSLEK-------------------WWN 96
           C    G    G++  KEI S K   +  T+    SL                       +
Sbjct: 7   CGYGSGQRTYGVDRRKEIVSGKRNQIYGTRDYPPSLPPPPGKVAAGRSNASSSLRIGGLS 66

Query: 97  DPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISGF 122
           D E KRK+R+A+YK Y V+ K+K+++  GF+W+KNKC +I+  F
Sbjct: 67  DAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of Lsi06G000630 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 50.8 bits (120), Expect = 6.7e-07
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1


Query: 66  KSSKKSLEKWWN--DPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIIS 120
           K  + S    W   DP+ +RK+RV  Y+ Y V+ KLK S  K FKW+K+KC K+++
Sbjct: 61  KKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]

BLAST of Lsi06G000630 vs. TAIR10
Match: AT3G62640.1 (AT3G62640.1 Protein of unknown function (DUF3511))

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 78  DPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISG 121
           D E KRK+R+A YK YA++ K+K+++ KGF W+K++ + II G
Sbjct: 68  DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of Lsi06G000630 vs. TAIR10
Match: AT3G13910.1 (AT3G13910.1 Protein of unknown function (DUF3511))

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 57  RKERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKN 113
           + + V  A +++ +S    ++DPE++RKRRVA YK Y+V+ K+K SI K FKW K+
Sbjct: 44  KSKSVPNADRAASRSWS--FSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFKD 97

[Close]

BLAST of Lsi06G000630 vs. NCBI nr
Match: gi|700210921|gb|KGN66017.1| (hypothetical protein Csa_1G561970 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 67/129 (51.94%), Postives = 80/129 (62.02%), Query Frame = 1


Query: 1   MDSLNNIKSLKISNSHII-------IKQRRAMEMG----RRYSGVASCRSSGGIGNMGLE 60
           MDSLNN   +  S +H         IKQ    +M     R+Y G A  +    +    LE
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETT-LE 60

Query: 61  TIKEIRSRKERVVEATKSSKKSLEKWW-NDPENKRK-RRVAKYKFYAVD-AKLKNSINKG 115
           TIKEIRS +ERVVEATK  KKS++KWW N+ ENKRK  RVAKYK Y ++ +KLK SIN G
Sbjct: 61  TIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNG 120

[Close]

BLAST of Lsi06G000630 vs. NCBI nr
Match: gi|1012360102|gb|KYP71286.1| (hypothetical protein KK1_010537 [Cajanus cajan])

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-11
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1


Query: 75  WWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIIS 120
           WWNDPENKRKRRVAKYK YA + KLK+S+ KG +W KNKC KI++
Sbjct: 65  WWNDPENKRKRRVAKYKLYAKEGKLKHSVKKGLRWFKNKCIKIVN 109

[Close]

BLAST of Lsi06G000630 vs. NCBI nr
Match: gi|659126920|ref|XP_008463430.1| (PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 59  ERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKII 118
           +R V  T    K  + WW  PE KR++RVAKYK YAV+ K+K+SI KGF+W+K KC++II
Sbjct: 45  KRYVTKTWEPSKMKKSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRII 104

Query: 119 SGF 122
           SGF
Sbjct: 105 SGF 107

[Close]

BLAST of Lsi06G000630 vs. NCBI nr
Match: gi|922347079|ref|XP_013450451.1| (DUF3511 domain protein [Medicago truncatula])

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 59  ERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKII 118
           E + E +   KK    WWNDPE KRKRRVA+YKFY  + KLK S+ KGF+W+K KC KI 
Sbjct: 60  ETLRERSVVKKKKSMSWWNDPERKRKRRVARYKFYGTEGKLKRSLKKGFQWLKVKCIKIS 119

Query: 119 SGF 122
           + F
Sbjct: 120 ASF 122

[Close]

BLAST of Lsi06G000630 vs. NCBI nr
Match: gi|729365021|ref|XP_010546758.1| (PREDICTED: uncharacterized protein LOC104818741 [Tarenaya hassleriana])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 30/58 (51.72%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 61  VVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKII 119
           + +   S   S++ WWNDPE KRKRRVAKYKFY+ + K+K ++ +G++W+KN+C+KII
Sbjct: 68  IKQKRSSHSTSIKGWWNDPEAKRKRRVAKYKFYSAEGKVKTTLKRGYRWIKNQCSKII 125

The following BLAST results are available for this feature:

BLAST of Lsi06G000630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G000630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYX3_CUCSA	8.3e-14	51.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561970 PE=4 SV=1	[more]
A0A151TW82_CAJCA	1.3e-11	71.11	Uncharacterized protein OS=Cajanus cajan GN=KK1_010537 PE=4 SV=1	[more]
A0A072U413_MEDTR	3.8e-11	55.56	DUF3511 domain protein OS=Medicago truncatula GN=MTR_7g112020 PE=4 SV=1	[more]
M4FHE8_BRARP	1.5e-10	61.11	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078G1D4_BRANA	1.5e-10	61.11	BnaAnng02720D protein OS=Brassica napus GN=BnaAnng02720D PE=4 SV=1	[more]

BLAST of Lsi06G000630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05725.1	5.3e-12	50.75	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	1.4e-07	31.73	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	6.7e-07	42.86	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	1.1e-06	48.84	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	2.0e-06	44.64	Protein of unknown function (DUF3511)	[more]

BLAST of Lsi06G000630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210921\|gb\|KGN66017.1\|	1.2e-13	51.94	hypothetical protein Csa_1G561970 [Cucumis sativus]	[more]
gi\|1012360102\|gb\|KYP71286.1\|	1.9e-11	71.11	hypothetical protein KK1_010537 [Cajanus cajan]	[more]
gi\|659126920\|ref\|XP_008463430.1\|	3.2e-11	55.56	PREDICTED: uncharacterized protein LOC103501594 [Cucumis melo]	[more]
gi\|922347079\|ref\|XP_013450451.1\|	5.5e-11	55.56	DUF3511 domain protein [Medicago truncatula]	[more]
gi\|729365021\|ref\|XP_010546758.1\|	2.1e-10	51.72	PREDICTED: uncharacterized protein LOC104818741 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000630.1	Lsi06G000630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 76..120 score: 2.2
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 55..121 score: 1.2
None	No IPR available	PANTHER	PTHR33193:SF3	SUBFAMILY NOT NAMED	coord: 55..121 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G000630	Csa1G561970	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000630	CSPI01G25930	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000630	Cla005166	Watermelon (97103) v1	lsiwmB396
Lsi06G000630	MELO3C015262	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000630	ClCG03G017660	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000630	MELO3C015262.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000630	Bhi02G001809	Wax gourd	lsiwgoB522
Lsi06G000630	CsGy1G025220	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000630	CsaV3_1G038330	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000630	Bottle gourd (USVL1VR-Ls)	lsilsiB060
Lsi06G000630	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000630	Cucumber (Gy14) v1	cgylsiB101
Lsi06G000630	Cucurbita maxima (Rimu)	cmalsiB070
Lsi06G000630	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000630	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000630	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000630	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G000630	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G000630	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000630	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000630	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G000630	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G000630	Cucurbita pepo (Zucchini)	cpelsiB095
Lsi06G000630	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000630	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000630	Cucurbita pepo (Zucchini)	cpelsiB682
Lsi06G000630	Wild cucumber (PI 183967)	cpilsiB134
Lsi06G000630	Cucumber (Chinese Long) v2	culsiB136
Lsi06G000630	Melon (DHL92) v3.5.1	lsimeB416
Lsi06G000630	Watermelon (Charleston Gray)	lsiwcgB359
Lsi06G000630	Watermelon (Charleston Gray)	lsiwcgB362
Lsi06G000630	Watermelon (97103) v1	lsiwmB392
Lsi06G000630	Watermelon (97103) v1	lsiwmB409
Lsi06G000630	Watermelon (97103) v2	lsiwmbB365