CsGy1G025220.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G025220.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 24174120 .. 24174506 (+)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

mRNA sequence

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Coding sequence (CDS)

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Protein sequence

MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGFKWMKNNKC

Homology

[Close]

BLAST of CsGy1G025220.1 vs. NCBI nr
Match: KGN66017.1 (hypothetical protein Csa_1G561970 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 7.5e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 129
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

[Close]

BLAST of CsGy1G025220.1 vs. TrEMBL
Match: tr|A0A0A0LYX3|A0A0A0LYX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.0e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 129
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

The following BLAST results are available for this feature:

BLAST of CsGy1G025220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66017.1	7.5e-63	100.00	hypothetical protein Csa_1G561970 [Cucumis sativus]	[more]

BLAST of CsGy1G025220.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G025220.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G025220.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYX3\|A0A0A0LYX3_CUCSA	5.0e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G025220	CsGy1G025220	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G025220.1.CDS.1	CsGy1G025220.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G025220.1	CsGy1G025220.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 89..125 e-value: 5.4E-9 score: 35.6