Cp4.1LG05g15730 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TACATCTAAACATATCTGCATGCAAGTTAGAAGCTTTAGCAATTAGTTAGCCCAAAAGAAATACCCAAGCCCAACCCAACTCGTCTCCCTCGCTTCAACTCTCTCTCTCTCTCTCTCTCTCTCATCTTACACCGCCGGCAACTTCTCGAATTGCTTCTCTGCAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAGTATTTCCTTCTTTTTCATTTTCTATCGTTTCACGTTTAGATCGCATTTTTCCTTCACGAGATCGCCAGAAAAGAAAAAAAAGATGATTTCATTTTGGTTCTTTAATTACTTTAGTTTTGACTGTCATTGGTCGCTCATCTTTTTGGCTTGACATGAAAGAGAGAGGATTCTGCTCAGCTGCATCAATTTATATTGCACGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTGAGGTCTTATTCCTTCAGTTTTATTATTAGATCATCGAGATACCTCTTTTTTCTTCTATTTCCTTTGAAATTCCCTTTAGATTCTTTTTCTTGGTGCGTTTTTTGCAGGTTCTTGAAAGCAGTCGATAGATTCAATGATCTGGTGGTGTCTGTTTATGTAACCGCTGGCCATATCCTTTAA TACATCTAAACATATCTGCATGCAAGTTAGAAGCTTTAGCAATTAGTTAGCCCAAAAGAAATACCCAAGCCCAACCCAACTCGTCTCCCTCGCTTCAACTCTCTCTCTCTCTCTCTCTCTCTCATCTTACACCGCCGGCAACTTCTCGAATTGCTTCTCTGCAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGAGAGGATTCTGCTCAGCTGCATCAATTTATATTGCACGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGATTCAATGATCTGGTGGTGTCTGTTTATGTAACCGCTGGCCATATCCTTTAA ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGAGAGGATTCTGCTCAGCTGCATCAATTTATATTGCACGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGATTCAATGATCTGGTGGTGTCTGTTTATGTAACCGCTGGCCATATCCTTTAA MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHIL
BLAST of Cp4.1LG05g15730 vs. Swiss-Prot
Match: TPC2B_HUMAN (Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.5e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. Swiss-Prot
Match: TPPC2_PONAB (Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.5e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. Swiss-Prot
Match: TPPC2_PIG (Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2) HSP 1 Score: 72.4 bits (176), Expect = 2.5e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. Swiss-Prot
Match: TPPC2_CANLF (Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAPPC2 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.5e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. Swiss-Prot
Match: TPPC2_BOVIN (Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.5e-12 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. TrEMBL
Match: A0A0A0LQF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338800 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 4.3e-35 Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. TrEMBL
Match: A0A067F9D4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 1.4e-33 Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. TrEMBL
Match: A0A061EID8_THECC (SNARE-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 2.3e-33 Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. TrEMBL
Match: A0A061EJF7_THECC (SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 2.3e-33 Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. TrEMBL
Match: V4U1H0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022803mg PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 3.0e-33 Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. TAIR10
Match: AT1G80500.1 (AT1G80500.1 SNARE-like superfamily protein) HSP 1 Score: 144.4 bits (363), Expect = 2.9e-35 Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. NCBI nr
Match: gi|700207117|gb|KGN62236.1| (hypothetical protein Csa_2G338800 [Cucumis sativus]) HSP 1 Score: 154.8 bits (390), Expect = 6.1e-35 Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. NCBI nr
Match: gi|449459192|ref|XP_004147330.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus]) HSP 1 Score: 152.1 bits (383), Expect = 4.0e-34 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. NCBI nr
Match: gi|659121801|ref|XP_008460820.1| (PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo]) HSP 1 Score: 150.2 bits (378), Expect = 1.5e-33 Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. NCBI nr
Match: gi|641845079|gb|KDO63968.1| (hypothetical protein CISIN_1g032720mg [Citrus sinensis]) HSP 1 Score: 149.8 bits (377), Expect = 2.0e-33 Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 1
BLAST of Cp4.1LG05g15730 vs. NCBI nr
Match: gi|590654916|ref|XP_007033837.1| (SNARE-like superfamily protein isoform 1 [Theobroma cacao]) HSP 1 Score: 149.1 bits (375), Expect = 3.3e-33 Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |