CmaCh02G000020 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G000020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTrafficking protein particle complex subunit 2
LocationCma_Chr02 : 3318 .. 6478 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACCCAAGCCCAACCCAACTCGTCTCCCTCACTTCAACTCTCTCTCTCTCTCTCATCTTACACCGCCGGCAACTTCTCGAATTGCTTCTCTGCAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAGTATTTCCTTCTTTTTCATTTTCTATCGTTTCACTTTAGATCGCATTTTCCCTTCACGAGATCGCCAAAAAAGAAAAAAAAAGATGATTTCATTTTGGTTCTTTAATTACTTTAGTTTTGACTGTCATTGGTCGCTTATCTTTTTGGCTTGACATGAAAGAGAGAGGATTCTGCTCAGCTGCATCAATTTATATTGCACGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTGAGGTCTTATTCCTTCAGTTTTATTATTAGATCATCGAGATACCTCTTTTTTCTTCTATTTCCTTTGAAATTCCCTTTAGATTCTTTTTCTTGGTGCGTTTTTTGCAGGTTCTTGAAAGCAGTCGATAGATTCAATGATCTGGTGGTGTCTGTTTATGTAACCGCTGGCCATATCCTTTAATATCGAGGGGGGTTTTACGGGAACAATGTGATGGGAATTGAGTCAAATTTCATCAATTTATTCACTTTTAAAAGATAACTCTAAATTAATAGAAGTTTTACTAGAGCTTTCCCCCGCCTCTTTGGTCTTTGGTCTTAAGAATGCTGGTTTTAAGAATTAATGATTGCCCTTCTCTCTTTTTCCCGGTCCAATATTTGTTCTCGAGAATCTATACCCTCACCACCCCGATTGCATTACTGAAGTATTTATACTGATAAAACGGTTCCAATCCTTTTTTAAGATATTGCAGGCAAAAATTTTCATTGTAATGGGATCAATGTTGTACTATGATTCTGGAATTCTATATACATTTGAGAGATTAAATTCAGTTTATAGTTCCTATTATTTCCTTTTCTGGTTTTTCTTTGACTATTCACTACATACGCGATTGATGTTACTTCATGACTCTCGCAATGATGATGGAATCAAGAGTTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGGTAAGTTTGACATGTTTCTTAGGTATTATTATTATTATTATTGCTATTTTGGAAGGTTTAATGCTTGATTTACTATGGTATATTACTTAGGTTGAGTGAACTGTACCTCATTTGATTAGATCCCACTAGATAGAGTTCATTCTTTTCCCTCAAATATACTGAATTTTGACATTTGGAATGGTACAGTTGTTAAATAAATAAATAAATTGTATCCCTTGAGTCTTAACTGTATATATTGATCAAAAAGAGTAAGTGGTTGATTTGTTATGAGTTCAGGTTGTCATCTTGAGTTTGCATGAAGCTTGAGATAGGGGTGGCAAGGATGGTTCATTTTTTTGATCCCTTGTTGTTTGGTCGTGTCAGGATGCTCAGATTCATGGCTCCTCTAGATTCCTTTAATGTGTTATTATTGTCTCTGTAGCACAGGATTGTGAACTATTTCTTCTAAGGAAATTAATTGGCTTTGGAAATAAAATCGATAGAATGATTTGAAATCGTGTAGTAAAGTTACAAAATATTGTTAATAATTTATCGAGTGGATTTACGTGTTTGTCCCATGAATTTGTTGAGGTGCACTAAGAGGGTCCGGACACTCACAGATATATGAAGAAAAAAAAAATCTAATGGGTTAAAGATAAGATTTCATCATCATAATTTAATTGCTGAAAGAACTATTTGTAGAAAAGCTATGTTTGGAACATACCAGATTTAATATCCTCTAACAGTGTACTTCAGCATTATGCTCGACTTGATTACATCACATTGAACAAAATGTAAGTGATAAAGATTTCCCGGTAACTTGTCTGTCATCTTCTCCTGATATATGATTCAATTAGCCAATCAAACTTTGAATTCTTGATGCTTTCTTGAATAGTAAGAAAGTGGTGTCAAGAGGGGAGTGTAATTGTTGTTCTGCTGATTTCTATCTGCTGTCATAATAGTATGATCCGGAGTACCACCCATCCCCAGCACTACGTACTTTTCCATTGGAAAAAATTTACCAATCAATGTATGGTATGCCTTTAATCAGCTATTCTGCTAATGAAATTAAATATTTCCTTGATTATTCTACATTGAGTTTCCAATACGAGAACTTCTGTGACTCCTCTCCTTCATTTATTATTATTTTCTCTTTTGGTTTTTTAGTGCACTGTTAGTTGGTATTCCTATCAAGTTTTGTAAGTTTCATCTAGTTAGGATTTCAAAACCTTTAATTCACGTTTAGCACTACATTAGATAAAAGGTTTGACACTTTGGTTTGGTCTCCGTTAGTCTACTCTGTACTATATTTGAAACTTAGTGAATGATGTAACATTGTTGTTGCAAAGATTTTGACGAGAGTGATTAAATTTTGTGGAATATTTTTATATTATTTATCCATTCCATTTGACAGGAAAGGAAAAGGAGACTTAGCTCTTGATTCCTGGCAATTTCCGTAGTACATACTTTCTCACAGCAAAGATATTAAACTCTTTCCAGGAAAAAATTTCCTAGAAAGTCCTTGGGAAATTTGATTAGAGCCTCACCTCTTCTTTTCCTATGTTATGTGCATGTATAAGTACACTATTTCCAATTTTTGGAAACTCTATCACCACTGTCAACCTTTTTGTGAGAATTTCGACTGAAGTTATTAAACTTTGGATAATTGTTCCAGTTATGTGTATATAAAAAAATTTATTTCCTTGGATGTCTTTCAGCTTTAAATCAAATTTACTTGAATTTCATCTATCGGATGAAATCAAAGTTAATTAGTTCAAGACAATTAAACGTCGGTTAACCATTTGTTAGTTGATGGGCTCTGGTCTTTTTTGTACTCCCCATGTTTCCAATGAATGACTGTGACCTGAACCTTGTTGTCTTCCAAATTCTTTTTCTCTATTGTTGCTACGGGAATTCATTTGGTGGCAATTGTCAGTTTGATAATGCTCATGATGTTAAATGGCTTTGTGAATTTGCAGACTATACTTAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTTGCGAGGAAGTATCTCTAG

mRNA sequence

ATACCCAAGCCCAACCCAACTCGTCTCCCTCACTTCAACTCTCTCTCTCTCTCTCATCTTACACCGCCGGCAACTTCTCGAATTGCTTCTCTGCAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGAGAGGATTCTGCTCAGCTGCATCAATTTATATTGCACGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGATTCAATGATCTGGTGGTGTCTGTTTATGTAACCGCTGGCCATACGCGATTGATGTTACTTCATGACTCTCGCAATGATGATGGAATCAAGAGTTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGACTATACTTAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTTGCGAGGAAGTATCTCTAG

Coding sequence (CDS)

ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGAGAGGATTCTGCTCAGCTGCATCAATTTATATTGCACGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGATTCAATGATCTGGTGGTGTCTGTTTATGTAACCGCTGGCCATACGCGATTGATGTTACTTCATGACTCTCGCAATGATGATGGAATCAAGAGTTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGACTATACTTAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTTGCGAGGAAGTATCTCTAG

Protein sequence

MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
Homology
[Close]
BLAST of CmaCh02G000020 vs. Swiss-Prot
Match: TPPC2_CANLF (Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAPPC2 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 65/138 (47.10%), Postives = 95/138 (68.84%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 121 ITSSHFDTKVRALARKYL 136
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of CmaCh02G000020 vs. Swiss-Prot
Match: TPPC2_PIG (Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 65/138 (47.10%), Postives = 95/138 (68.84%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 121 ITSSHFDTKVRALARKYL 136
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of CmaCh02G000020 vs. Swiss-Prot
Match: TRS20_SCHPO (Transport protein particle 20 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 63/135 (46.67%), Postives = 95/135 (70.37%), Query Frame = 1 

Query: 4   TACFIIVSRNNIPIYEAEVGSAAKRED---SAQLHQFILHASLDIVQDLAWTTSAMFLKA 63
           TA   I+   + P+YE E+G   ++ D   ++ L+QFI+H+SLDIV  L WT++A ++K 
Sbjct: 2   TAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKT 61

Query: 64  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 123
           +D+F+++ +S YVT  + R MLLH +++ D IK FFQE+HELYIKT+++P Y P   I S
Sbjct: 62  IDQFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRS 121

Query: 124 SHFDTKVRALARKYL 136
             FD KVR++AR+YL
Sbjct: 122 QAFDLKVRSIARRYL 136

[Close]
BLAST of CmaCh02G000020 vs. Swiss-Prot
Match: TPPC2_BOVIN (Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 65/138 (47.10%), Postives = 95/138 (68.84%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 121 ITSSHFDTKVRALARKYL 136
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of CmaCh02G000020 vs. Swiss-Prot
Match: TPPC2_MOUSE (Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-31
Identity = 65/138 (47.10%), Postives = 95/138 (68.84%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEV---GSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 121 ITSSHFDTKVRALARKYL 136
           I SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of CmaCh02G000020 vs. TrEMBL
Match: M5XZB8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013209mg PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-67
Identity = 128/135 (94.81%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACF+IVSRN+IPIYEAEVGSAAKRED+AQLHQFILHA+LDIVQDLAWTTSAM+LKA
Sbjct: 1   MATTACFVIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSRITS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]
BLAST of CmaCh02G000020 vs. TrEMBL
Match: A0A061EJF7_THECC (SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-67
Identity = 128/135 (94.81%), Postives = 133/135 (98.52%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVGSAAKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSRITS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKVLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]
BLAST of CmaCh02G000020 vs. TrEMBL
Match: A0A061EID8_THECC (SNARE-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.5e-67
Identity = 128/135 (94.81%), Postives = 133/135 (98.52%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVGSAAKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSRITS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]
BLAST of CmaCh02G000020 vs. TrEMBL
Match: V4U1H0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022803mg PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.2e-67
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN IPIYEAEVGSAAKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSRITS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]
BLAST of CmaCh02G000020 vs. TrEMBL
Match: A0A0R0KH89_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G207300 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-66
Identity = 127/135 (94.07%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVG AAKRED+AQLHQFILHA+LDIVQDLAWTTSAM+LK+
Sbjct: 22  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKS 81

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           VDRFN+LVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSRITS
Sbjct: 82  VDRFNELVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITS 141

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 142 SHFDTKVRALARKYL 156

[Close]
BLAST of CmaCh02G000020 vs. TAIR10
Match: AT1G80500.1 (AT1G80500.1 SNARE-like superfamily protein)

HSP 1 Score: 256.9 bits (655), Expect = 6.9e-69
Identity = 125/135 (92.59%), Postives = 132/135 (97.78%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIV RN+IPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           VDRFNDLVVSVYVTAGHTRLMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]
BLAST of CmaCh02G000020 vs. TAIR10
Match: AT2G20930.1 (AT2G20930.1 SNARE-like superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-09
Identity = 37/138 (26.81%), Postives = 66/138 (47.83%), Query Frame = 1 

Query: 6   CFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLA-------WTTSAMFL 65
           C  +V   N P+Y   + S    +D+ +LH  I+H SLD++++          T +  FL
Sbjct: 4   CVAVVGHQNNPLY---IQSFTDADDALKLHH-IVHCSLDVIEERVNNPKKSGTTLNEAFL 63

Query: 66  KAVDRFNDLVVSVYVTAGHTRLMLLHDSRN--DDGIKSFFQEVHELYIKTILNPLYLPGS 125
             +    +  V  Y+T    + +L+    +  D  ++SFF++ H  Y+  + NP ++PG 
Sbjct: 64  GLLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGK 123

Query: 126 RITSSHFDTKVRALARKY 135
           +ITS  F   V  +   Y
Sbjct: 124 KITSRTFAQTVSNIVGSY 137

[Close]
BLAST of CmaCh02G000020 vs. NCBI nr
Match: gi|449459192|ref|XP_004147330.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 5.0e-69
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR+TS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]
BLAST of CmaCh02G000020 vs. NCBI nr
Match: gi|659121801|ref|XP_008460820.1| (PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-68
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]
BLAST of CmaCh02G000020 vs. NCBI nr
Match: gi|778670342|ref|XP_011649448.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR+T
Sbjct: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVT 120

Query: 121 SSHFDTKVRALARKYL 136
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 136

[Close]
BLAST of CmaCh02G000020 vs. NCBI nr
Match: gi|596289200|ref|XP_007226059.1| (hypothetical protein PRUPE_ppa013209mg [Prunus persica])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 128/135 (94.81%), Postives = 135/135 (100.00%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACF+IVSRN+IPIYEAEVGSAAKRED+AQLHQFILHA+LDIVQDLAWTTSAM+LKA
Sbjct: 1   MATTACFVIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSRITS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]
BLAST of CmaCh02G000020 vs. NCBI nr
Match: gi|694325676|ref|XP_009353773.1| (PREDICTED: trafficking protein particle complex subunit 2-like [Pyrus x bretschneideri])

HSP 1 Score: 262.3 bits (669), Expect = 4.6e-67
Identity = 128/135 (94.81%), Postives = 134/135 (99.26%), Query Frame = 1 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVGSAAKRED+AQLHQFILHA+LDIVQDLAWTTSAM+LKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120
           +DRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSRI S
Sbjct: 61  IDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRIAS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

The following BLAST results are available for this feature:
BLAST of CmaCh02G000020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TPPC2_CANLF1.1e-3147.10Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAP... [more]
TPPC2_PIG1.1e-3147.10Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=... [more]
TRS20_SCHPO1.1e-3146.67Transport protein particle 20 kDa subunit OS=Schizosaccharomyces pombe (strain 9... [more]
TPPC2_BOVIN1.1e-3147.10Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=... [more]
TPPC2_MOUSE1.4e-3147.10Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 S... [more]
BLAST of CmaCh02G000020 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XZB8_PRUPE1.1e-6794.81Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013209mg PE=4 SV=1[more]
A0A061EJF7_THECC4.2e-6794.81SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 S... [more]
A0A061EID8_THECC5.5e-6794.81SNARE-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_019945 PE=4 S... [more]
V4U1H0_9ROSI7.2e-6794.81Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022803mg PE=4 SV=1[more]
A0A0R0KH89_SOYBN2.1e-6694.07Uncharacterized protein OS=Glycine max GN=GLYMA_04G207300 PE=4 SV=1[more]
BLAST of CmaCh02G000020 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80500.16.9e-6992.59 SNARE-like superfamily protein[more]
AT2G20930.12.7e-0926.81 SNARE-like superfamily protein[more]
BLAST of CmaCh02G000020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459192|ref|XP_004147330.1|5.0e-6998.52PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus... [more]
gi|659121801|ref|XP_008460820.1|1.4e-6898.52PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo][more]
gi|778670342|ref|XP_011649448.1|1.2e-6797.79PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus... [more]
gi|596289200|ref|XP_007226059.1|1.6e-6794.81hypothetical protein PRUPE_ppa013209mg [Prunus persica][more]
gi|694325676|ref|XP_009353773.1|4.6e-6794.81PREDICTED: trafficking protein particle complex subunit 2-like [Pyrus x bretschn... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006722Sedlin
IPR011012Longin-like_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006810transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006810 transport
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G000020.1CmaCh02G000020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006722Trafficking protein particle complex subunit 2PANTHERPTHR12403MBP-1 INTERACTING PROTEIN-2Acoord: 1..135
score: 1.6
IPR006722Trafficking protein particle complex subunit 2PFAMPF04628Sedlin_Ncoord: 9..133
score: 4.3
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 1..135
score: 7.96
NoneNo IPR availableGENE3DG3DSA:3.30.450.70coord: 3..135
score: 3.9
NoneNo IPR availablePANTHERPTHR12403:SF14SUBFAMILY NOT NAMEDcoord: 1..135
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G000020Cla007855Watermelon (97103) v1cmawmB609
CmaCh02G000020MELO3C023193Melon (DHL92) v3.5.1cmameB544
CmaCh02G000020ClCG02G000050Watermelon (Charleston Gray)cmawcgB537
CmaCh02G000020Lsi10G007870Bottle gourd (USVL1VR-Ls)cmalsiB557
CmaCh02G000020Cp4.1LG05g15730Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G000020MELO3C023193.2Melon (DHL92) v3.6.1cmamedB622
CmaCh02G000020Cla97C02G026250Watermelon (97103) v2cmawmbB624
CmaCh02G000020Bhi10G001392Wax gourdcmawgoB0766
CmaCh02G000020Carg26725Silver-seed gourdcarcmaB0464
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G000020Cucumber (Gy14) v2cgybcmaB236
CmaCh02G000020Cucumber (Chinese Long) v3cmacucB0708