CSPI02G16500 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G16500
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Trafficking protein particle complex subunit 2
Location	Chr2 : 15889332 .. 15894575 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGCATCCAAGCCCAGCCCAGCCCGCCCCCTCCCTTTTAACTCTCTGTCGTCTCACTCCATCGGAGACCTTCCGAATTCAAATCAGAATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAATAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAGTATTTTCTTCTTCTTCTTCTTCATCGTTTTCCATTTTGTTTTTCATGTTTAGGCTGAATATTTCCTTCACAAGATCGCCAATAAAAGGTGATATCGTTAATTACTCTAGTTTTGACTGTCATTAGTCGCTCATCTTTTTGGCATGACATGAAAGAGAGAGGATTCCGCTCAGCTGCATCAGTTTATACTGCATGCGTCCCTCGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTGAGTTCGTATTCCTTCTAGTTCTTTATTAGATCATCGAGACGCCTTCTTTATCTTTTTTTTTTTTTTTTGTTCTTTTCCCCTTTAAATTTCGGCTTAACTCCCTTGTTGGATTTTATGCAGGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTATATGTAACCGCCGGTCATATCCTTTAATGTCGAGAGGGTTTGTCAAGCACACTGTGCTGGAAATTATGTCAAATTTCATTAATGCACTCACTCGTAAAACTCAACTCTAAATTAGTGGAAGTTTTATCTTTGAATCTTTTGCATCTGTACCCCACCCCCCACCATTGCATTACTTATATATTGACTGATAGAATCTGCAATCAAACCTTTTCATTATACGAGACACATGTTTTCCTATGATTCAGGCATTCTAAATACATTCGAGAGATTAATTTCAGTTCATAGTTCATATTGTTGCCTTCTTTTACCAATATTCTGATTTTCCTTTGACTATTCACTACATACGCGATTGATGTTACTTCACGACTCTCGCAATGATGATGGAATTAAGAGCTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGGTAAGTTGGACATTTTTTCTTATGTATCACTATTGTTATTGCTTGTGGTGCTTAGTGTGTGTGTGTATTTCAACAACACACGGGGGAGTGTTGTGCTTAATTTTGCTATGTTATGTATATTATACGGGTTGATTGAAGTATATCTTAGTTGATTAAGTTACTTTTCCAAAGCTGGGAGACATACTTTGATTCGGTCTGTTATGAGTGGCATTCCCATTTACTTATTTTCTTTGTTTAGAACCTGAGTAAAGTTTGCAAGGACATTGAATAACTGATGTGTAACTTTCTTTGGGAAGAGGTGGAAGAAGGAAATGGATTGCAACGAGTTAGATAGGAGATCGATGAACTCAGGGAATTAAAAATTGATTATGAAAGGACTCATAACAAAGCCCTATTAGCTTTGGCATTTTGCTCTTGATTCTGTTACCTTTTTGCACAAGGATATTGCTTGCAAGTTTGGGCCTCATCCCTTTGAGTGGTTGTCAGGTGGGCGTGGGATTAAAGGCATCAACTAGAATTTGTGGAAGGATATTTCTAACAAGCTGCCCTCTTTCTCCCATTTTGTCTGTTGTGTGGTTGGGTAGAGGAGGGTGAGGAAGCATAGTTCTGGGGTGATCAGTGCTTGGGGATAGACCTCTCTGCTTCCATTTCCTCATCTGTATCATTTATCCTTCTCTAGAAATCATTTTGTTTCTGACTTTTTTATTTGGTTGGGGAGCCCGGTTTCCTTTTTCTTCGGGTTTAATCGCTCTTTGACTGATAGGGAAGCTACAAATGTCATCTCTTTGCTGTCGTTGGGGGAGTTTAACTTTAGATATGGGAGAAAGGATCTACTTGTCTAGAATCTCAACCCTCTGGAGGGATTCTTTTGTAATTCCATTTTTTGTTGTCTGGTGAATCCTTCTCCTTCTCAGTAGTATGTTTTTCAGCCCTTAGAGGATTAAGATTCTTGAGAAGGAGAGATCTTTACCTGGAAAATTTTACATGAACGTATGAACATTTTGGATATGCTCTCAAGAGGAGGAAGAGGTTGTCCTCGTTAGGGGGCCCTTTTTTGTATTATGTTGGAAGGTGGGTAAAGACTTGGATCACATCCTTTGGAGAGTTGCACACTATGTCTAGAATTTGGTCTTCCATAAATTTGGTTTTGCTTTGTGTTTATCTCAATGAAAGTTCTTGCATTATCTAAAAAAGAAAAAAAAAGTTCTTGCTTAATGGAGATATATATATAGAAACAGAACAGTCCAAGAAAGAAGATTTGGGGCTCAAGAAAGGAGACCAGTCCAAGAATATCAATAACCTTTTCCAAGAAACCAAGATTACTATAAAAAACTTCAAGATTGGAGTTCTACCGATGATGAGCTGCAAGAAAGGATAGTAAACAATCATAACAGAAGGTTCCGACCACATGCTGATGGTAGGAGAAAAAAAACCAGCAGTTGGTATAGACAAGAAAATCAATTGTACTTCCATAAACAATGTTGGAGTTCTGATTCAAGTGATTCGGAAGAAGAATTTCAGCATTCAAATTTTGGCCATGCTCGATTGTCTCGAAAAATCTATCGTCATCCAAATTGGAAAAATGATTCTAGTGACTTCGATGATGTTTCTAAAACAGTTTGGGAGAGAATAAGAAGGTGACAATATCAAAAAATGGCCCAACGATCCAATCAAACCCATTTTCCAAGAAATCAACTTTCATTGGGGAAAATGACTCAACATGTAGATCAACCATCAATTTATTTGCAAGAGTCCAATGACATTGGTTTCATATACAGAAGAAAAAACAAAGAAATCACAGTTGGGAAATTATCAAATAGAAAATCATGAAGATAAAATTGAAGAACAAGAATCTGAAAATGTTGATTTGGAAATGATCATAAGTGATGAAAAATCCAACGAAGAAGATGAAAAAGAAGTATCAAACACCAAGCAAAAATCGAACAAGAACAACGACACATTGATTGCAATGGAATTGAATCTTCAAACTGTCGAAGAACTTGTAGTGAATAATAAAGAAAATATGATTCTTGAAGGATTTTCTTTGAAAGTTAATTCTTTTGAAATTGATTATTTGAAGACGGTTTTAAGTGAGATTGAAGGGAACATCTTTTTCGGGTTTACGGCTGATGGAGTGATTCATCATTTAGTGGCGATGTTTGATTTTTTTTGTCTCCATTTTATTCCTTCAATCACATTATTTTTGTCCAAAACGTAGGAGGTTGGTTTGGTCATACCCATTGTGCTTGATGGATTTCATCTCTCATACCAAACTCGGGACAAGTTTGATACTAGGGTAGGGGGTGGAATGATGTAAACTGTCTTTACTTACTGTTATATTTTCACTAGTCGTTTAGCAACAATTACTGTTATGCTTTTATTTATTGTTAGTTAGCTAAAACTATCTTAGTTACTTTGTAACCAACTACTTCTACATTTTCCCTATAAATAAAGCAACTCCTCTCACATTGAGAGGCAGAACATAACATTCAAATAAAAGACTCTTTGGTTTCACACCAGCTAGAGTTACAAAATATTGTTAATTATTTGGTAGTGGTACGTTTTTAATAAGTTTTAATAATAGTGATTGAGTTGTTGAATGAACTATTTGTAGAAAAACTATGTTTATGACATACCAAGATTATTTCCCTCCGAAGTGTTCTTTAGCGTTATCCTTTGACTTGATCGCACCACACAAACAAAATGGCCTAGAATAAGTGATAACAATTTCATGGCAAAAAAAAGCATAGCTCATCTAACATCTATTTGTATTGGTGACCACGAACCCTGGGGTTTTAATCCCCCAAGTCCCTCTTGTACTCAAGTGTTAAATATTCATGTTAACTTGTCTCTCATCCTCTCCTGATTTTTATATATATATTTTCACTCTCTATTGTAGACTTTTTTCTTCCATTAGCCAAAAAGACTTTTCCCCGTCTATGAAACCATTAAGTGTTTTTGTTTGAATAGAAGAAAAGTGGTGTTAAGACCGGAGTGTAATTGTTGTTCTGCTTATTTGTAACTGCTATCATATAGTAGGTTCCTGAGGGCCTCCCATCCCCAGGCATTATTTACGTTCTATCGGCAAAATTTCCCAATCAATGTAGGCTATTCTGCAACTGAAATTTCACTTTTCTTGATGATTCTAGTTTGATTTTACCCATACGAAAACTTCTGTGACTGCTCTCCTTTGTTGATTATTGTACTCTTTTGGATTTTAGCGCATTATCTTAGTTAGTATTCCTATCAAATTTTGCAAGTTTTCATCAAGCTAGGATTTCAAGACCTTAAATTTCAATTTTCATGTTTGCCATAACAGTAGATAATTAAAAGGTTTGGTACTTTGGTTGATCACCTTCAGTCTACTCTCTAATTTTTGGAGCTTCATGAATGATGCAACAGTGTTTTTGCAAAGATTTTGACAAGAGTAATAAATAAGTTTGAGGACTACTTATCATATAATTTCATAATATTGTCCATTTCATTTGATAGGCAACGATGACTAGGGGCCTAAGCTCTGTATATAATTTTTCATAGTTAAGTATTTCCATGGATGTGATTTTTTGGCTTTGAATCAAACTTACTTGATTCTCATCTATCGGAAGAATTATAAGTTAATCAATTCAAGACAATTAAACGCTGGGTACCTTTTGGTTAGTTGGTGGGCTTTGGTCTCCTTTGTGTTCCCCATGTTTTCAATGTATGGCTGTGGCATGAACCTTGTTGCGTTTCAGATATTTTTTCTCCATTGTTGCCCTTGATAATGCACATGACTGAAATTGGCTTTGTGAATTTGCAGACCATACTCAATCCCCTCTACTTGCCTGGATCACGTGTCACGTCTTCACATTTTGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAATGATCACCTTCATTGCAGACCAAATGTGCTTTCGTGACAATGCTTCAAAGTTCATAGCAGCCCTGAGTTTTCTTTTAACAGTACAACATTTTAATCTTTGCTATTTGTGGCCCTGACATCAATCAATTCAGTAGTTAAACGCCCCTCAATGTGTAATATTGACTTTGGAATGGCTTGGTCGCGAGTTGGAATTGCATTTTACAGTAATGCGTTCGCTACTCCCTTTTTACTCATCTTTTATTGTAGGGAGTAATATCATTATTTGTTATATTCTAGAAGGCAGTGGATATGGGATATTAAAGTTATGTAAAATATGCATTTTTTGAAAAGCTCAAGAGACCAGTCC

mRNA sequence

ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAATAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATACTGCATGCGTCCCTCGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTATATGTAACCGCCGGTCATACGCGATTGATGTTACTTCACGACTCTCGCAATGATGATGGAATTAAGAGCTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGACCATACTCAATCCCCTCTACTTGCCTGGATCACGTGTCACGTCTTCACATTTTGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAA

Coding sequence (CDS)

ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAATAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATACTGCATGCGTCCCTCGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTATATGTAACCGCCGGTCATACGCGATTGATGTTACTTCACGACTCTCGCAATGATGATGGAATTAAGAGCTTTTTTCAAGAGGTTCACGAGCTTTACATAAAGACCATACTCAATCCCCTCTACTTGCCTGGATCACGTGTCACGTCTTCACATTTTGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAA

Homology

[Close]

BLAST of CSPI02G16500 vs. Swiss-Prot
Match: TPPC2_BOVIN (Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 121 VTSSHFDTKVRALARKYL 136
           + SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]

BLAST of CSPI02G16500 vs. Swiss-Prot
Match: TPPC2_CANLF (Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAPPC2 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 121 VTSSHFDTKVRALARKYL 136
           + SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]

BLAST of CSPI02G16500 vs. Swiss-Prot
Match: TPPC2_PIG (Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 121 VTSSHFDTKVRALARKYL 136
           + SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]

BLAST of CSPI02G16500 vs. Swiss-Prot
Match: TPPC2_MOUSE (Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-31
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEV---GSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 121 VTSSHFDTKVRALARKYL 136
           + SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]

BLAST of CSPI02G16500 vs. Swiss-Prot
Match: TPC2B_HUMAN (Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-31
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR 120
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

Query: 121 VTSSHFDTKVRALARKYL 136
           + SS FD KV+ L +K+L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138

[Close]

BLAST of CSPI02G16500 vs. TrEMBL
Match: M5XZB8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013209mg PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-67
Identity = 126/135 (93.33%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACF+IVSRN+IPIYEAEVGSA KRED+AQLHQFILHA+LDIVQDLAWTTSAM+LKA
Sbjct: 1   MATTACFVIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           +DRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSR+TS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. TrEMBL
Match: A0A067FL79_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.6e-67
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSR+TS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. TrEMBL
Match: A0A061EJF7_THECC (SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.5e-67
Identity = 126/135 (93.33%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVGSA KRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSR+TS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKVLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. TrEMBL
Match: A0A061EID8_THECC (SNARE-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-66
Identity = 126/135 (93.33%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVGSA KRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSR+TS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. TrEMBL
Match: V4U1H0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022803mg PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-66
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN IPIYEAEVGSA KRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSR+TS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. TAIR10
Match: AT1G80500.1 (AT1G80500.1 SNARE-like superfamily protein)

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-68
Identity = 123/135 (91.11%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           VDRFNDLVVSVYVTAGHTRLMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSR+TS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. TAIR10
Match: AT2G20930.1 (AT2G20930.1 SNARE-like superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-09
Identity = 36/138 (26.09%), Postives = 66/138 (47.83%), Query Frame = 1


Query: 6   CFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLA-------WTTSAMFL 65
           C  +V   N P+Y   + S    +D+ +LH  I+H SLD++++          T +  FL
Sbjct: 4   CVAVVGHQNNPLY---IQSFTDADDALKLHH-IVHCSLDVIEERVNNPKKSGTTLNEAFL 63

Query: 66  KAVDRFNDLVVSVYVTAGHTRLMLLHDSRN--DDGIKSFFQEVHELYIKTILNPLYLPGS 125
             +    +  V  Y+T    + +L+    +  D  ++SFF++ H  Y+  + NP ++PG 
Sbjct: 64  GLLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGK 123

Query: 126 RVTSSHFDTKVRALARKY 135
           ++TS  F   V  +   Y
Sbjct: 124 KITSRTFAQTVSNIVGSY 137

[Close]

BLAST of CSPI02G16500 vs. NCBI nr
Match: gi|449459192|ref|XP_004147330.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 7.7e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. NCBI nr
Match: gi|659121801|ref|XP_008460820.1| (PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 3.8e-69
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR+TS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. NCBI nr
Match: gi|778670342|ref|XP_011649448.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-68
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVT
Sbjct: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVT 120

Query: 121 SSHFDTKVRALARKYL 136
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 136

[Close]

BLAST of CSPI02G16500 vs. NCBI nr
Match: gi|596289200|ref|XP_007226059.1| (hypothetical protein PRUPE_ppa013209mg [Prunus persica])

HSP 1 Score: 262.7 bits (670), Expect = 3.6e-67
Identity = 126/135 (93.33%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACF+IVSRN+IPIYEAEVGSA KRED+AQLHQFILHA+LDIVQDLAWTTSAM+LKA
Sbjct: 1   MATTACFVIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           +DRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKT+LNPLYLPGSR+TS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

[Close]

BLAST of CSPI02G16500 vs. NCBI nr
Match: gi|568882443|ref|XP_006494040.1| (PREDICTED: trafficking protein particle complex subunit 2 [Citrus sinensis])

HSP 1 Score: 262.3 bits (669), Expect = 4.7e-67
Identity = 127/135 (94.07%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK++LNPLYLPGSR+TS
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKSLLNPLYLPGSRITS 120

Query: 121 SHFDTKVRALARKYL 136
           SHFDTKVRALARKYL
Sbjct: 121 SHFDTKVRALARKYL 135

The following BLAST results are available for this feature:

BLAST of CSPI02G16500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPPC2_BOVIN	1.1e-31	46.38	Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=...	[more]
TPPC2_CANLF	1.1e-31	46.38	Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAP...	[more]
TPPC2_PIG	1.1e-31	46.38	Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=...	[more]
TPPC2_MOUSE	1.4e-31	46.38	Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 S...	[more]
TPC2B_HUMAN	1.4e-31	46.38	Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1...	[more]

BLAST of CSPI02G16500 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XZB8_PRUPE	2.5e-67	93.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013209mg PE=4 SV=1	[more]
A0A067FL79_CITSI	5.6e-67	94.07	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1	[more]
A0A061EJF7_THECC	9.5e-67	93.33	SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 S...	[more]
A0A061EID8_THECC	1.2e-66	93.33	SNARE-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_019945 PE=4 S...	[more]
V4U1H0_9ROSI	1.6e-66	93.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022803mg PE=4 SV=1	[more]

BLAST of CSPI02G16500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80500.1	1.5e-68	91.11	SNARE-like superfamily protein	[more]
AT2G20930.1	2.8e-09	26.09	SNARE-like superfamily protein	[more]

BLAST of CSPI02G16500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459192\|ref\|XP_004147330.1\|	7.7e-70	100.00	PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus...	[more]
gi\|659121801\|ref\|XP_008460820.1\|	3.8e-69	98.52	PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo]	[more]
gi\|778670342\|ref\|XP_011649448.1\|	1.9e-68	99.26	PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus...	[more]
gi\|596289200\|ref\|XP_007226059.1\|	3.6e-67	93.33	hypothetical protein PRUPE_ppa013209mg [Prunus persica]	[more]
gi\|568882443\|ref\|XP_006494040.1\|	4.7e-67	94.07	PREDICTED: trafficking protein particle complex subunit 2 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006722	Sedlin
IPR011012	Longin-like_dom_sf

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006888	ER to Golgi vesicle-mediated transport
GO:0006810	transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0006810	transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G16500.1	CSPI02G16500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006722	Trafficking protein particle complex subunit 2	PANTHER	PTHR12403	MBP-1 INTERACTING PROTEIN-2A	coord: 1..135 score: 4.5
IPR006722	Trafficking protein particle complex subunit 2	PFAM	PF04628	Sedlin_N	coord: 9..133 score: 2.0
IPR011012	Longin-like domain	unknown	SSF64356	SNARE-like	coord: 1..135 score: 4.21
None	No IPR available	GENE3D	G3DSA:3.30.450.70		coord: 3..135 score: 3.3
None	No IPR available	PANTHER	PTHR12403:SF14	SUBFAMILY NOT NAMED	coord: 1..135 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G16500	Cla007855	Watermelon (97103) v1	cpiwmB152
CSPI02G16500	Csa2G338800	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G16500	MELO3C023193	Melon (DHL92) v3.5.1	cpimeB094
CSPI02G16500	ClCG02G000050	Watermelon (Charleston Gray)	cpiwcgB126
CSPI02G16500	Lsi10G007870	Bottle gourd (USVL1VR-Ls)	cpilsiB095
CSPI02G16500	MELO3C023193.2	Melon (DHL92) v3.6.1	cpimedB085
CSPI02G16500	CsaV3_2G019710	Cucumber (Chinese Long) v3	cpicucB082
CSPI02G16500	Cla97C02G026250	Watermelon (97103) v2	cpiwmbB119
CSPI02G16500	Bhi10G001392	Wax gourd	cpiwgoB183
CSPI02G16500	Cucsa.228110	Cucumber (Gy14) v1	cgycpiB339
CSPI02G16500	Cp4.1LG05g15730	Cucurbita pepo (Zucchini)	cpecpiB711
CSPI02G16500	CsGy2G016090	Cucumber (Gy14) v2	cgybcpiB058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G16500	Cucurbita moschata (Rifu)	cmocpiB540
CSPI02G16500	Cucurbita pepo (Zucchini)	cpecpiB273