Lsi05G022040 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G022040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein transport protein Sec61 subunit beta
Location	chr05 : 28613567 .. 28613881 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCGCTTGGTCAATAGTCAGCTTGAAAGTTCCAACTTTACTTATTCTTTGTCAATACAGAATGGCACTAGGTGGAGCAAATCCCCAGAGAGGAAGTGCGGCAGCTACAGCCAGCATGCGCAGGAGGAGGACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACAATGCTTCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATAGCTTTTGTTGCCATTCTCCATGTTATGGGTAAGCTGTATTTCGTGCGAAGAGAAGCCTAG

mRNA sequence

ATGTCTTCCGCTTGGTCAATAGTCAGCTTGAAAGTTCCAACTTTACTTATTCTTTGTCAATACAGAATGGCACTAGGTGGAGCAAATCCCCAGAGAGGAAGTGCGGCAGCTACAGCCAGCATGCGCAGGAGGAGGACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACAATGCTTCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATAGCTTTTGTTGCCATTCTCCATGTTATGGGTAAGCTGTATTTCGTGCGAAGAGAAGCCTAG

Coding sequence (CDS)

ATGTCTTCCGCTTGGTCAATAGTCAGCTTGAAAGTTCCAACTTTACTTATTCTTTGTCAATACAGAATGGCACTAGGTGGAGCAAATCCCCAGAGAGGAAGTGCGGCAGCTACAGCCAGCATGCGCAGGAGGAGGACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACAATGCTTCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATAGCTTTTGTTGCCATTCTCCATGTTATGGGTAAGCTGTATTTCGTGCGAAGAGAAGCCTAG

Protein sequence

MSSAWSIVSLKVPTLLILCQYRMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

Homology

[Close]

BLAST of Lsi05G022040 vs. Swiss-Prot
Match: SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-26
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 25  LGGANPQRGSAAATASMRRRRTTSS----GTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 84
           +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2   VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 85  SIGFIAFVAILHVMGKLYFVR 102
           SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62  SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Lsi05G022040 vs. Swiss-Prot
Match: SC61B_YARLI (Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 29 NPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFV 88
          N QR  A A+   +R  +T S  +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V
Sbjct: 20 NAQRQEAKAS---QRPTSTRSVGAGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSV 79

Query: 89 AILHVMGKL 98
            LH++ K+
Sbjct: 80 VALHILAKV 85

[Close]

BLAST of Lsi05G022040 vs. Swiss-Prot
Match: SC61B_CANLF (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 27 GANPQRGSAAATA--SMRRRRTTSSGT------SGGAAGTMLQFYTDDAPGLKISPNVVL 86
          G +P +  AA  A  ++R+R+  S GT      +    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 87 VMSIGFIAFVAILHVMGK 97
          VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92

[Close]

BLAST of Lsi05G022040 vs. Swiss-Prot
Match: SC61B_HUMAN (Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 27 GANPQRGSAAATA--SMRRRRTTSSGT------SGGAAGTMLQFYTDDAPGLKISPNVVL 86
          G +P +  AA  A  ++R+R+  S GT      +    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 87 VMSIGFIAFVAILHVMGK 97
          VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92

[Close]

BLAST of Lsi05G022040 vs. Swiss-Prot
Match: SC61B_MOUSE (Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 27 GANPQRGSAAATA--SMRRRRTTSSGT------SGGAAGTMLQFYTDDAPGLKISPNVVL 86
          G +P +  AA  A  ++R+R+  S GT      +    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 87 VMSIGFIAFVAILHVMGK 97
          VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIAAVFMLHIWGK 92

[Close]

BLAST of Lsi05G022040 vs. TrEMBL
Match: A0A0A0L6Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117430 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040 vs. TrEMBL
Match: I3T8K1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.6e-32
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGGA PQRGSAAA ASMRRRRTTS G SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGAAPQRGSAAAAASMRRRRTTSGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040 vs. TrEMBL
Match: W9QQ35_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021777 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.9e-32
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1


Query: 22  RMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 81
           +M LGGA P RGSAAATASMRRRRTTSSG SGGAAGTMLQFYTDDAPGLKISPNVVL+MS
Sbjct: 510 KMVLGGAAPPRGSAAATASMRRRRTTSSGASGGAAGTMLQFYTDDAPGLKISPNVVLIMS 569

Query: 82  IGFIAFVAILHVMGKLYFVRREA 105
           IGFIAFVAILHVMGKLYFVRRE+
Sbjct: 570 IGFIAFVAILHVMGKLYFVRRES 592

[Close]

BLAST of Lsi05G022040 vs. TrEMBL
Match: V7AKD3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G169200g PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-30
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  P RGSAAATA+MRRRRTT  G SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGTAPPRGSAAATANMRRRRTTGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040 vs. TrEMBL
Match: V7AM96_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G070500g PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  P RGSAAATA+MRRRRTTS G SGGAAG MLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGTAPPRGSAAATANMRRRRTTSGGASGGAAGNMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040 vs. TAIR10
Match: AT2G45070.1 (AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-27
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 25  LGGANPQRGSAAATASMRRRRTTSS----GTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 84
           +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2   VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 85  SIGFIAFVAILHVMGKLYFVR 102
           SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62  SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Lsi05G022040 vs. TAIR10
Match: AT3G60540.1 (AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 118.2 bits (295), Expect = 2.9e-27
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 25  LGGANPQRGSAAATASMRRRRTTS-SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 84
           +GG  PQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2   VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61

Query: 85  FIAFVAILHVMGKLYFVR 102
           FIAFVA+LHVMGKLYFV+
Sbjct: 62  FIAFVAVLHVMGKLYFVK 79

[Close]

BLAST of Lsi05G022040 vs. TAIR10
Match: AT5G60460.1 (AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-16
Identity = 50/80 (62.50%), Postives = 55/80 (68.75%), Query Frame = 1


Query: 27  GANPQRGSAAATASMRRRRTTSSG--TSGGAAGT------MLQFYTDDAPGLKISPNVVL 86
           G    RGSAAATA MRRRR    G  +SGG +G       ML+FYTDDAPGLKISP VVL
Sbjct: 22  GLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRFYTDDAPGLKISPTVVL 81

Query: 87  VMSIGFIAFVAILHVMGKLY 99
           +MS+ FI FV  LHV GKLY
Sbjct: 82  IMSLCFIGFVTALHVFGKLY 101

[Close]

BLAST of Lsi05G022040 vs. NCBI nr
Match: gi|778676662|ref|XP_011650635.1| (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-33
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040 vs. NCBI nr
Match: gi|659074770|ref|XP_008437786.1| (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGG-PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 81

[Close]

BLAST of Lsi05G022040 vs. NCBI nr
Match: gi|388521563|gb|AFK48843.1| (unknown [Lotus japonicus])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGGA PQRGSAAA ASMRRRRTTS G SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGAAPQRGSAAAAASMRRRRTTSGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040 vs. NCBI nr
Match: gi|703072297|ref|XP_010089248.1| (hypothetical protein L484_021777 [Morus notabilis])

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1


Query: 22  RMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 81
           +M LGGA P RGSAAATASMRRRRTTSSG SGGAAGTMLQFYTDDAPGLKISPNVVL+MS
Sbjct: 510 KMVLGGAAPPRGSAAATASMRRRRTTSSGASGGAAGTMLQFYTDDAPGLKISPNVVLIMS 569

Query: 82  IGFIAFVAILHVMGKLYFVRREA 105
           IGFIAFVAILHVMGKLYFVRRE+
Sbjct: 570 IGFIAFVAILHVMGKLYFVRRES 592

[Close]

BLAST of Lsi05G022040 vs. NCBI nr
Match: gi|502085814|ref|XP_004488016.1| (PREDICTED: protein transport protein Sec61 subunit beta-like [Cicer arietinum])

HSP 1 Score: 141.4 bits (355), Expect = 9.2e-31
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVAILHVMGKLYFVRREA
Sbjct: 61  GFIAFVAILHVMGKLYFVRREA 82

The following BLAST results are available for this feature:

BLAST of Lsi05G022040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SC61B_ARATH	1.8e-26	80.25	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g4507...	[more]
SC61B_YARLI	9.2e-07	44.93	Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB...	[more]
SC61B_CANLF	1.6e-06	43.59	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B...	[more]
SC61B_HUMAN	1.6e-06	43.59	Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2	[more]
SC61B_MOUSE	1.6e-06	43.59	Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3	[more]

BLAST of Lsi05G022040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Y8_CUCSA	3.1e-33	96.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117430 PE=4 SV=1	[more]
I3T8K1_LOTJA	7.6e-32	93.90	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
W9QQ35_9ROSA	9.9e-32	91.57	Uncharacterized protein OS=Morus notabilis GN=L484_021777 PE=4 SV=1	[more]
V7AKD3_PHAVU	1.9e-30	90.24	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G169200g PE=4 SV=1	[more]
V7AM96_PHAVU	2.4e-30	90.24	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G070500g PE=4 SV=1	[more]

BLAST of Lsi05G022040 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45070.1	1.0e-27	80.25	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT3G60540.1	2.9e-27	80.77	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT5G60460.1	2.3e-16	62.50	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

BLAST of Lsi05G022040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676662\|ref\|XP_011650635.1\|	4.4e-33	96.34	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]	[more]
gi\|659074770\|ref\|XP_008437786.1\|	1.1e-31	96.34	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo]	[more]
gi\|388521563\|gb\|AFK48843.1\|	1.1e-31	93.90	unknown [Lotus japonicus]	[more]
gi\|703072297\|ref\|XP_010089248.1\|	1.4e-31	91.57	hypothetical protein L484_021777 [Morus notabilis]	[more]
gi\|502085814\|ref\|XP_004488016.1\|	9.2e-31	91.46	PREDICTED: protein transport protein Sec61 subunit beta-like [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005784	Sec61 translocon complex

Vocabulary: **INTERPRO**
Term	Definition
IPR016482	SecG/Sec61-beta/Sbh

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005784	Sec61 translocon complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G022040.1	Lsi05G022040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 56..95 score: 3.0
None	No IPR available	PANTHER	PTHR13509:SF2	PREPROTEIN TRANSLOCASE SEC, SEC61-BETA SUBUNIT PROTEIN-RELATED	coord: 22..103 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G022040	Csa3G117430	Cucumber (Chinese Long) v2	culsiB209
Lsi05G022040	CSPI03G07280	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G022040	Cucsa.259840	Cucumber (Gy14) v1	cgylsiB415
Lsi05G022040	CmaCh06G009610	Cucurbita maxima (Rimu)	cmalsiB766
Lsi05G022040	CmaCh14G021540	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G022040	CmoCh06G009830	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G022040	CmoCh14G022260	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G022040	Cla021092	Watermelon (97103) v1	lsiwmB365
Lsi05G022040	ClCG05G000250	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G022040	MELO3C005959.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G022040	Cla97C05G080230	Watermelon (97103) v2	lsiwmbB333
Lsi05G022040	Bhi01G000433	Wax gourd	lsiwgoB433
Lsi05G022040	Cp4.1LG08g00370	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G022040	Cp4.1LG03g15720	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G022040	CsGy3G007420	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G022040	Carg24172	Silver-seed gourd	carlsiB088
Lsi05G022040	Carg17680	Silver-seed gourd	carlsiB119
Lsi05G022040	CsaV3_3G007400	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G022040	Melon (DHL92) v3.5.1	lsimeB378