Lsi06G001110 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G001110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ER membrane protein complex subunit 6
Location	chr06 : 1074274 .. 1077919 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACACTTTGGTTCTTTCTCTGGGTTCTCCCCTCTACCATCTCTACCACAATCGCAAGTCGCACATCACCATCAGCTCCCTTCTCCCTCTCCATCGCTGCCATTATCGGTCGCCGGCTTCCTCCCATTTTCCGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCAGAAGTTATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGGTTTTTCGATGCTTCAAAGAACTTTACTTGCTTGCTGATACCAATTGTCTTTTATTTCCTCCTGTATCGAAAGTAGTAGAATCCTATCAATTTTCTTAGAATTGGAATCCTTCCGTGACAGACCTTTTCTGTTTCTAGTTCTATCCTCTTAATTAGCAGCTTATGTAACTGTAGATTTAATTGGTTGACCTAAAATTTTAATGAGTCCTGAGCACTGTGCGACGGAGACTGATACAATTCAATTTCTCGGGAGTGTTTGCATTCAAATTGAGTTGCTACAAATATCATATTATGAATTTGTTTTTCTTTTGAGTTTTGTGAATTTAGATCGTAAACTTCTATTATCTTTTGCAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGGTATGCAGCCTCTGCCCTTATATTTTAGATTGGACGAATTAATAAGTAATTTGAATTTTCAGATCTAATGATTCTAGGGTTTCTAAGTTACCAACCCTTTCTTGTTAATTGCATACGTTTGTTCTGTATTTACTATTTAGAAGAATTGAAGAAATTAGTTACAACTGGTATTTTCACCCACTTCACTCTCCTGCTTCTACTCCTGGAATATACAAGTTTGGAATCAAAGGAGAAGACAGGTCACAGTACGATCTTCAATGTTATCGTGCTGGAGGCAAGTCGAAGAAAAGACAGTACAATTCTATTTCTTTTAGAAGGCAGTATGATGCGAGAAGAGGGAAGGCCCAATTCTAAGTTGAATGTTCTTTTAACCACCTTGGGATCCCCTTTAGGGTGATTTCTTATCCTCCTGGCTAGGCTTTCATAGATTGTTGATTTTTGAACAATTTTCTCATCTCCTATTAAGGAAAATATAGGAAAATGCAATTCGAATGAGGGTTTACTGAGTATAAGAACTAATGTAGATTTTGAAGAAAGGAAAGATTGTAGTTTAAGGTTATTTCGAAAACCTTGTGATAAGAGATATCTTGGACCCTTGGTGACCAGAAACTTTAAATCTAAATGGATAAATAAATGGGATAACAATGTGAGTTTGTTTGATCATACTGATGGGGAAAGGAAATATAAAATAGATGAACAAGTTGATTTTAGGAAATGGTCCATTTGAGATGTGGAAATGTTAAGGGTTCACTGTACACTTGCAGCAGGATAGAGGTCTCTAGAGCCTTGGGGTCGGATTGGTTTGCAATTCCCACAGTGAAACTTGAATGGCCTGAAGATCTGAGTTTGATAAAATTGAAAAAAAGCGAATAAATCCCGGTCCTTACGTAATCCAATGGGCAACTTGGCTTTATTTCAAGATTGTGCTAGTAAACAATGATTTGATGAAGGTTTTCAGGGAATTCTATGATAGGGGTGGTTTACGGGATGTATTAGTGCTACTCATATTTGCTTAATACCTAACAAGTATGGGGCTATGGACTTTCAGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGGTAAAGCTGTAGGGGTTTGGTTTTGCATGGAGAAGTTAGATTAGTCATTAGTGGTGATTTAAATCCTTCATTATTTTTTCCCATGTTTGCGTGAGAACATAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGTGGGCGTCGGTTATGACTTCCTTTTTTTTTTTTGAGGTATGCTTGTATGCTACATTTTTTTCTCAAGGGAAGTTGGTGATTTGTCTAAGAAAAACAGTTGCAACAAATGTAGTCATCATCTAAGTTGGAGTACTGTTTTCTTGCGTAAAGATTTTAGAGGATTAAGACTTGGTAAGTTGCCTGAGAAAAAACATGGCTTTGCTTGCCAAGAGGATATGGAATTTCCGCTGGAAAGCCAAAGGTGGAAGCATTTTGCTGATGGTATAAGAAGTAAATATTGGATTCCTCTGGATAGCATTTGAAGGAACGCATAAGGTGTAGCATGGAAATCAATAGTATATTTCAAATCCTTGGTGGAAGCGTTAGATGTCTCAAAACAAAGAAATGTGAAGAGAATCAAATTTGGGAGGATATTCTTATTAATTTGGTGGTGAGACCTAAGAACAGGGAAGATATTAGGTTTTGGAGTTGAGATTTCAGGATTCTTCACTATTTCCTTCATTATAATTACCTTTGGTTTTGTACCCTAAAAATTATCATAAGTTTTTCTCAAACTAATTTTATTTGTTTATGTTTTATGTATTTTTTTTTTTTTAAAATTATGATTACCATTTCGAATAACGTAAATGAGATATCCTCCTTTCCTTTTCATTGTTTAAAGAAAAGGAGAGAAATCTCCTTTTCCTACACTAATTCTACAGCCTAACATGATAAAGCATATACCCTATCCTTAATTGGTTCGAATCAATTCCAGAATTCTTGAGTTTCCCTAAAGCCCAGATTGATCTCTGATCATCTTTTCGTAGAGACTAGGGACATAATTTTTCTGTTTGACATTAGAAAATGTTTGCTCATTTTCTCAGCATACTATAGATGCTAAAATTAAGAGATTATCTTACACTATATTATTTGTCTTGTGATGACTCATTATTCTTATGTGTTTTGGCATGCAACAACCTATGGGCACTGACCCTTTGTTCTATTTTTGCAGTCGTTCGTGCTTTTCTGGACGTATCCTTTCCATAACTTTATGGTTTATACATAATGTTTGATAGTATACCAATTGCGTGTTTAGGACAATCTTTCAATAGGATAAAAGTATTTTTTGGCTTGCTTAAAATACTTTCAAAATTTTTGAACTTTACACTATTAAAACATTCTGAAGTGGTTTTTTTTTTTTTTTTTTTTTTCTTCCTCTTCAAGAAAACACTGAATGATACTTTCTTTAAGAGGTAGTTCTCAAATACATACCCACAGAGTATTTCTAATTTACTTTTATTTCACATTTCCTCCAAATTCTTGCTTCTAGAAATTGTATGCTGACCGTGCTTTTCTTAACATGAAAAAGTTTCGCATACGACATTGTTCACATATTCTGAGTCCAAATGCTGGCAGGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

mRNA sequence

AACACTTTGGTTCTTTCTCTGGGTTCTCCCCTCTACCATCTCTACCACAATCGCAAGTCGCACATCACCATCAGCTCCCTTCTCCCTCTCCATCGCTGCCATTATCGGTCGCCGGCTTCCTCCCATTTTCCGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCAGAAGTTATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Coding sequence (CDS)

ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Protein sequence

MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMNSEYSSFNTSLVIPSKRNQMRFWQRGKVKASMGLHGQGFGDFGSSGAFERESFNIWSLMRSNVTLNSNSRVAAAFCTIRLETGNSKQ

Homology

[Close]

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_HUMAN (ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_MOUSE (ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_BOVIN (ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAR 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_XENTR (ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLIGGL 93

[Close]

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_XENLA (ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLVGGL 93

[Close]

BLAST of Lsi06G001110 vs. TrEMBL
Match: A0A0A0LZ06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 98/132 (74.24%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM---------NSEYSSFN 120
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM         +  +SS  
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTPRHCSFSSIQ 120

Query: 121 TSLVIPSKRNQM 124
            S   P+  N++
Sbjct: 121 RSRFSPNATNKL 132

[Close]

BLAST of Lsi06G001110 vs. TrEMBL
Match: D7SYI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.6e-35
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG + S ASEKKS++A +D+P FNAENLQ+N+KIIYYSRTFLSIIGGVIAGILGFTG T
Sbjct: 355 MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 414

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GFIFYFLVMAITS+ L AKA FS HSYF+SWN+I+LDGFL GLM+
Sbjct: 415 GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMS 459

[Close]

BLAST of Lsi06G001110 vs. TrEMBL
Match: V4RXU7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMNSEYSSFNTSLVIPSKR 120
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM     SF      PSK 
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLM-----SFVLFWTYPSKN 160

Query: 121 NQ 123
           ++
Sbjct: 164 SK 160

[Close]

BLAST of Lsi06G001110 vs. TrEMBL
Match: V4TZX7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.1e-34
Identity = 77/104 (74.04%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM+
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMS 147

[Close]

BLAST of Lsi06G001110 vs. TrEMBL
Match: V4S1H0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.1e-34
Identity = 77/104 (74.04%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM+
Sbjct: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMS 104

[Close]

BLAST of Lsi06G001110 vs. TAIR10
Match: AT5G49540.1 (AT5G49540.1 Rab5-interacting family protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-30
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 8   ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLV 67
           +SEK+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+V
Sbjct: 3   SSEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVV 62

Query: 68  MAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           M ITS+ L AKA FS+  YF+SWN++L DGFL GLM+
Sbjct: 63  MLITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLMS 99

[Close]

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|700210966|gb|KGN66062.1| (hypothetical protein Csa_1G569390 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 98/132 (74.24%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM---------NSEYSSFN 120
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM         +  +SS  
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTPRHCSFSSIQ 120

Query: 121 TSLVIPSKRNQM 124
            S   P+  N++
Sbjct: 121 RSRFSPNATNKL 132

[Close]

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|659099503|ref|XP_008450632.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           FIFYFLVMAITS+ALAAKA FS HSYFES NQILLDGFL GLM+
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLMS 104

[Close]

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|449435645|ref|XP_004135605.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 4.7e-41
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM+
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMS 104

[Close]

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|720047499|ref|XP_010270839.1| (PREDICTED: ER membrane protein complex subunit 6 [Nelumbo nucifera])

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 80/105 (76.19%), Postives = 96/105 (91.43%), Query Frame = 1


Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG+  S AS+KK++D+++DLP FNAENLQNN+KIIYYSRTFLSIIGGVIAGILG+TGLT
Sbjct: 1   MAGHEDSGASKKKTADSSNDLPTFNAENLQNNMKIIYYSRTFLSIIGGVIAGILGYTGLT 60

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GF+FYFL+MAITSL LAAKA FS HSYF+ WN++LLDGFL GL++
Sbjct: 61  GFVFYFLIMAITSLGLAAKAKFSIHSYFDCWNRLLLDGFLGGLLS 105

[Close]

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|1009172447|ref|XP_015867276.1| (PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba])

HSP 1 Score: 156.4 bits (394), Expect = 5.0e-35
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG++ S ASEKKS++A +DLP FNAEN+Q+N+KIIYYSRTF+SIIGGVIAGILGFT LT
Sbjct: 1   MAGHNDSNASEKKSNEATNDLPTFNAENMQSNMKIIYYSRTFMSIIGGVIAGILGFTSLT 60

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GFIFYFLVMAITS+ L AKA FS HSYF SWNQI+LDGFL GLM+
Sbjct: 61  GFIFYFLVMAITSVGLTAKAGFSIHSYFSSWNQIVLDGFLGGLMS 105

The following BLAST results are available for this feature:

BLAST of Lsi06G001110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EMC6_HUMAN	2.6e-07	39.02	ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1	[more]
EMC6_MOUSE	2.6e-07	39.02	ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1	[more]
EMC6_BOVIN	4.4e-07	39.02	ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1	[more]
EMC6_XENTR	1.7e-06	40.00	ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1	[more]
EMC6_XENLA	2.2e-06	40.00	ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1	[more]

BLAST of Lsi06G001110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ06_CUCSA	1.5e-41	74.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1	[more]
D7SYI1_VITVI	4.6e-35	78.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=...	[more]
V4RXU7_9ROSI	2.3e-34	67.21	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1	[more]
V4TZX7_9ROSI	5.1e-34	74.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1	[more]
V4S1H0_9ROSI	5.1e-34	74.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1	[more]

BLAST of Lsi06G001110 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49540.1	3.0e-30	65.98	Rab5-interacting family protein	[more]

BLAST of Lsi06G001110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210966\|gb\|KGN66062.1\|	2.1e-41	74.24	hypothetical protein Csa_1G569390 [Cucumis sativus]	[more]
gi\|659099503\|ref\|XP_008450632.1\|	2.1e-41	90.38	PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo]	[more]
gi\|449435645\|ref\|XP_004135605.1\|	4.7e-41	89.42	PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus]	[more]
gi\|720047499\|ref\|XP_010270839.1\|	2.3e-35	76.19	PREDICTED: ER membrane protein complex subunit 6 [Nelumbo nucifera]	[more]
gi\|1009172447\|ref\|XP_015867276.1\|	5.0e-35	78.10	PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0072546	ER membrane protein complex
GO:0016021	integral component of membrane
GO:0005783	endoplasmic reticulum

Vocabulary: **INTERPRO**
Term	Definition
IPR008504	Emc6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0072546	ER membrane protein complex
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G001110.1	Lsi06G001110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008504	ER membrane protein complex subunit 6	PANTHER	PTHR20994	UNCHARACTERIZED	coord: 8..103 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G001110	Csa1G569390	Cucumber (Chinese Long) v2	culsiB058
Lsi06G001110	CSPI01G26450	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G001110	Cucsa.181900	Cucumber (Gy14) v1	cgylsiB304
Lsi06G001110	Cla005190	Watermelon (97103) v1	lsiwmB392
Lsi06G001110	MELO3C015305	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G001110	ClCG03G017390	Watermelon (Charleston Gray)	lsiwcgB362
Lsi06G001110	MELO3C015305.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G001110	Cla97C03G067770	Watermelon (97103) v2	lsiwmbB363
Lsi06G001110	Bhi02G001760	Wax gourd	lsiwgoB528
Lsi06G001110	CsGy1G025700	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G001110	CsaV3_1G038810	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G001110	Silver-seed gourd	carlsiB221
Lsi06G001110	Watermelon (97103) v2	lsiwmbB365
Lsi06G001110	Wax gourd	lsiwgoB486
Lsi06G001110	Wax gourd	lsiwgoB507
Lsi06G001110	Bottle gourd (USVL1VR-Ls)	lsilsiB060
Lsi06G001110	Bottle gourd (USVL1VR-Ls)	lsilsiB161
Lsi06G001110	Cucumber (Gy14) v1	cgylsiB101
Lsi06G001110	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G001110	Cucurbita maxima (Rimu)	cmalsiB146
Lsi06G001110	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G001110	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G001110	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G001110	Cucurbita moschata (Rifu)	cmolsiB130
Lsi06G001110	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G001110	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G001110	Cucurbita pepo (Zucchini)	cpelsiB095
Lsi06G001110	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G001110	Cucurbita pepo (Zucchini)	cpelsiB564
Lsi06G001110	Cucurbita pepo (Zucchini)	cpelsiB682
Lsi06G001110	Wild cucumber (PI 183967)	cpilsiB134
Lsi06G001110	Cucumber (Chinese Long) v2	culsiB136
Lsi06G001110	Melon (DHL92) v3.5.1	lsimeB416
Lsi06G001110	Watermelon (Charleston Gray)	lsiwcgB359
Lsi06G001110	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G001110	Watermelon (97103) v1	lsiwmB396
Lsi06G001110	Watermelon (97103) v1	lsiwmB409