Lsi06G001110.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G001110.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ER membrane protein complex subunit 6
Location	chr06 : 1074274 .. 1077919 (+)
Sequence length	746

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACACTTTGGTTCTTTCTCTGGGTTCTCCCCTCTACCATCTCTACCACAATCGCAAGTCGCACATCACCATCAGCTCCCTTCTCCCTCTCCATCGCTGCCATTATCGGTCGCCGGCTTCCTCCCATTTTCCGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCAGAAGTTATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGGTTTTTCGATGCTTCAAAGAACTTTACTTGCTTGCTGATACCAATTGTCTTTTATTTCCTCCTGTATCGAAAGTAGTAGAATCCTATCAATTTTCTTAGAATTGGAATCCTTCCGTGACAGACCTTTTCTGTTTCTAGTTCTATCCTCTTAATTAGCAGCTTATGTAACTGTAGATTTAATTGGTTGACCTAAAATTTTAATGAGTCCTGAGCACTGTGCGACGGAGACTGATACAATTCAATTTCTCGGGAGTGTTTGCATTCAAATTGAGTTGCTACAAATATCATATTATGAATTTGTTTTTCTTTTGAGTTTTGTGAATTTAGATCGTAAACTTCTATTATCTTTTGCAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGGTATGCAGCCTCTGCCCTTATATTTTAGATTGGACGAATTAATAAGTAATTTGAATTTTCAGATCTAATGATTCTAGGGTTTCTAAGTTACCAACCCTTTCTTGTTAATTGCATACGTTTGTTCTGTATTTACTATTTAGAAGAATTGAAGAAATTAGTTACAACTGGTATTTTCACCCACTTCACTCTCCTGCTTCTACTCCTGGAATATACAAGTTTGGAATCAAAGGAGAAGACAGGTCACAGTACGATCTTCAATGTTATCGTGCTGGAGGCAAGTCGAAGAAAAGACAGTACAATTCTATTTCTTTTAGAAGGCAGTATGATGCGAGAAGAGGGAAGGCCCAATTCTAAGTTGAATGTTCTTTTAACCACCTTGGGATCCCCTTTAGGGTGATTTCTTATCCTCCTGGCTAGGCTTTCATAGATTGTTGATTTTTGAACAATTTTCTCATCTCCTATTAAGGAAAATATAGGAAAATGCAATTCGAATGAGGGTTTACTGAGTATAAGAACTAATGTAGATTTTGAAGAAAGGAAAGATTGTAGTTTAAGGTTATTTCGAAAACCTTGTGATAAGAGATATCTTGGACCCTTGGTGACCAGAAACTTTAAATCTAAATGGATAAATAAATGGGATAACAATGTGAGTTTGTTTGATCATACTGATGGGGAAAGGAAATATAAAATAGATGAACAAGTTGATTTTAGGAAATGGTCCATTTGAGATGTGGAAATGTTAAGGGTTCACTGTACACTTGCAGCAGGATAGAGGTCTCTAGAGCCTTGGGGTCGGATTGGTTTGCAATTCCCACAGTGAAACTTGAATGGCCTGAAGATCTGAGTTTGATAAAATTGAAAAAAAGCGAATAAATCCCGGTCCTTACGTAATCCAATGGGCAACTTGGCTTTATTTCAAGATTGTGCTAGTAAACAATGATTTGATGAAGGTTTTCAGGGAATTCTATGATAGGGGTGGTTTACGGGATGTATTAGTGCTACTCATATTTGCTTAATACCTAACAAGTATGGGGCTATGGACTTTCAGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGGTAAAGCTGTAGGGGTTTGGTTTTGCATGGAGAAGTTAGATTAGTCATTAGTGGTGATTTAAATCCTTCATTATTTTTTCCCATGTTTGCGTGAGAACATAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGTGGGCGTCGGTTATGACTTCCTTTTTTTTTTTTGAGGTATGCTTGTATGCTACATTTTTTTCTCAAGGGAAGTTGGTGATTTGTCTAAGAAAAACAGTTGCAACAAATGTAGTCATCATCTAAGTTGGAGTACTGTTTTCTTGCGTAAAGATTTTAGAGGATTAAGACTTGGTAAGTTGCCTGAGAAAAAACATGGCTTTGCTTGCCAAGAGGATATGGAATTTCCGCTGGAAAGCCAAAGGTGGAAGCATTTTGCTGATGGTATAAGAAGTAAATATTGGATTCCTCTGGATAGCATTTGAAGGAACGCATAAGGTGTAGCATGGAAATCAATAGTATATTTCAAATCCTTGGTGGAAGCGTTAGATGTCTCAAAACAAAGAAATGTGAAGAGAATCAAATTTGGGAGGATATTCTTATTAATTTGGTGGTGAGACCTAAGAACAGGGAAGATATTAGGTTTTGGAGTTGAGATTTCAGGATTCTTCACTATTTCCTTCATTATAATTACCTTTGGTTTTGTACCCTAAAAATTATCATAAGTTTTTCTCAAACTAATTTTATTTGTTTATGTTTTATGTATTTTTTTTTTTTTAAAATTATGATTACCATTTCGAATAACGTAAATGAGATATCCTCCTTTCCTTTTCATTGTTTAAAGAAAAGGAGAGAAATCTCCTTTTCCTACACTAATTCTACAGCCTAACATGATAAAGCATATACCCTATCCTTAATTGGTTCGAATCAATTCCAGAATTCTTGAGTTTCCCTAAAGCCCAGATTGATCTCTGATCATCTTTTCGTAGAGACTAGGGACATAATTTTTCTGTTTGACATTAGAAAATGTTTGCTCATTTTCTCAGCATACTATAGATGCTAAAATTAAGAGATTATCTTACACTATATTATTTGTCTTGTGATGACTCATTATTCTTATGTGTTTTGGCATGCAACAACCTATGGGCACTGACCCTTTGTTCTATTTTTGCAGTCGTTCGTGCTTTTCTGGACGTATCCTTTCCATAACTTTATGGTTTATACATAATGTTTGATAGTATACCAATTGCGTGTTTAGGACAATCTTTCAATAGGATAAAAGTATTTTTTGGCTTGCTTAAAATACTTTCAAAATTTTTGAACTTTACACTATTAAAACATTCTGAAGTGGTTTTTTTTTTTTTTTTTTTTTTCTTCCTCTTCAAGAAAACACTGAATGATACTTTCTTTAAGAGGTAGTTCTCAAATACATACCCACAGAGTATTTCTAATTTACTTTTATTTCACATTTCCTCCAAATTCTTGCTTCTAGAAATTGTATGCTGACCGTGCTTTTCTTAACATGAAAAAGTTTCGCATACGACATTGTTCACATATTCTGAGTCCAAATGCTGGCAGGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

mRNA sequence

AACACTTTGGTTCTTTCTCTGGGTTCTCCCCTCTACCATCTCTACCACAATCGCAAGTCGCACATCACCATCAGCTCCCTTCTCCCTCTCCATCGCTGCCATTATCGGTCGCCGGCTTCCTCCCATTTTCCGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCAGAAGTTATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Coding sequence (CDS)

ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Protein sequence

MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMNSEYSSFNTSLVIPSKRNQMRFWQRGKVKASMGLHGQGFGDFGSSGAFERESFNIWSLMRSNVTLNSNSRVAAAFCTIRLETGNSKQ

Homology

[Close]

BLAST of Lsi06G001110.1 vs. Swiss-Prot
Match: EMC6_HUMAN (ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of Lsi06G001110.1 vs. Swiss-Prot
Match: EMC6_MOUSE (ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of Lsi06G001110.1 vs. Swiss-Prot
Match: EMC6_BOVIN (ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAR 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of Lsi06G001110.1 vs. Swiss-Prot
Match: EMC6_XENTR (ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLIGGL 93

[Close]

BLAST of Lsi06G001110.1 vs. Swiss-Prot
Match: EMC6_XENLA (ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLVGGL 93

[Close]

BLAST of Lsi06G001110.1 vs. TrEMBL
Match: A0A0A0LZ06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 98/132 (74.24%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM---------NSEYSSFN 120
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM         +  +SS  
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTPRHCSFSSIQ 120

Query: 121 TSLVIPSKRNQM 124
            S   P+  N++
Sbjct: 121 RSRFSPNATNKL 132

[Close]

BLAST of Lsi06G001110.1 vs. TrEMBL
Match: D7SYI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.6e-35
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG + S ASEKKS++A +D+P FNAENLQ+N+KIIYYSRTFLSIIGGVIAGILGFTG T
Sbjct: 355 MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 414

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GFIFYFLVMAITS+ L AKA FS HSYF+SWN+I+LDGFL GLM+
Sbjct: 415 GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMS 459

[Close]

BLAST of Lsi06G001110.1 vs. TrEMBL
Match: V4RXU7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMNSEYSSFNTSLVIPSKR 120
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM     SF      PSK 
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLM-----SFVLFWTYPSKN 160

Query: 121 NQ 123
           ++
Sbjct: 164 SK 160

[Close]

BLAST of Lsi06G001110.1 vs. TrEMBL
Match: V4TZX7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.1e-34
Identity = 77/104 (74.04%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM+
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMS 147

[Close]

BLAST of Lsi06G001110.1 vs. TrEMBL
Match: V4S1H0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.1e-34
Identity = 77/104 (74.04%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM+
Sbjct: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMS 104

[Close]

BLAST of Lsi06G001110.1 vs. TAIR10
Match: AT5G49540.1 (AT5G49540.1 Rab5-interacting family protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-30
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 8   ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLV 67
           +SEK+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+V
Sbjct: 3   SSEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVV 62

Query: 68  MAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           M ITS+ L AKA FS+  YF+SWN++L DGFL GLM+
Sbjct: 63  MLITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLMS 99

[Close]

BLAST of Lsi06G001110.1 vs. NCBI nr
Match: gi|700210966|gb|KGN66062.1| (hypothetical protein Csa_1G569390 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 98/132 (74.24%), Postives = 107/132 (81.06%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM---------NSEYSSFN 120
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM         +  +SS  
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTPRHCSFSSIQ 120

Query: 121 TSLVIPSKRNQM 124
            S   P+  N++
Sbjct: 121 RSRFSPNATNKL 132

[Close]

BLAST of Lsi06G001110.1 vs. NCBI nr
Match: gi|659099503|ref|XP_008450632.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           FIFYFLVMAITS+ALAAKA FS HSYFES NQILLDGFL GLM+
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLMS 104

[Close]

BLAST of Lsi06G001110.1 vs. NCBI nr
Match: gi|449435645|ref|XP_004135605.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 4.7e-41
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = 1


Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM+
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMS 104

[Close]

BLAST of Lsi06G001110.1 vs. NCBI nr
Match: gi|720047499|ref|XP_010270839.1| (PREDICTED: ER membrane protein complex subunit 6 [Nelumbo nucifera])

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 80/105 (76.19%), Postives = 96/105 (91.43%), Query Frame = 1


Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG+  S AS+KK++D+++DLP FNAENLQNN+KIIYYSRTFLSIIGGVIAGILG+TGLT
Sbjct: 1   MAGHEDSGASKKKTADSSNDLPTFNAENLQNNMKIIYYSRTFLSIIGGVIAGILGYTGLT 60

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GF+FYFL+MAITSL LAAKA FS HSYF+ WN++LLDGFL GL++
Sbjct: 61  GFVFYFLIMAITSLGLAAKAKFSIHSYFDCWNRLLLDGFLGGLLS 105

[Close]

BLAST of Lsi06G001110.1 vs. NCBI nr
Match: gi|1009172447|ref|XP_015867276.1| (PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba])

HSP 1 Score: 156.4 bits (394), Expect = 5.0e-35
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG++ S ASEKKS++A +DLP FNAEN+Q+N+KIIYYSRTF+SIIGGVIAGILGFT LT
Sbjct: 1   MAGHNDSNASEKKSNEATNDLPTFNAENMQSNMKIIYYSRTFMSIIGGVIAGILGFTSLT 60

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GFIFYFLVMAITS+ L AKA FS HSYF SWNQI+LDGFL GLM+
Sbjct: 61  GFIFYFLVMAITSVGLTAKAGFSIHSYFSSWNQIVLDGFLGGLMS 105

The following BLAST results are available for this feature:

BLAST of Lsi06G001110.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EMC6_HUMAN	2.6e-07	39.02	ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1	[more]
EMC6_MOUSE	2.6e-07	39.02	ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1	[more]
EMC6_BOVIN	4.4e-07	39.02	ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1	[more]
EMC6_XENTR	1.7e-06	40.00	ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1	[more]
EMC6_XENLA	2.2e-06	40.00	ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1	[more]

BLAST of Lsi06G001110.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ06_CUCSA	1.5e-41	74.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1	[more]
D7SYI1_VITVI	4.6e-35	78.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=...	[more]
V4RXU7_9ROSI	2.3e-34	67.21	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1	[more]
V4TZX7_9ROSI	5.1e-34	74.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1	[more]
V4S1H0_9ROSI	5.1e-34	74.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1	[more]

BLAST of Lsi06G001110.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49540.1	3.0e-30	65.98	Rab5-interacting family protein	[more]

BLAST of Lsi06G001110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210966\|gb\|KGN66062.1\|	2.1e-41	74.24	hypothetical protein Csa_1G569390 [Cucumis sativus]	[more]
gi\|659099503\|ref\|XP_008450632.1\|	2.1e-41	90.38	PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo]	[more]
gi\|449435645\|ref\|XP_004135605.1\|	4.7e-41	89.42	PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus]	[more]
gi\|720047499\|ref\|XP_010270839.1\|	2.3e-35	76.19	PREDICTED: ER membrane protein complex subunit 6 [Nelumbo nucifera]	[more]
gi\|1009172447\|ref\|XP_015867276.1\|	5.0e-35	78.10	PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0072546	ER membrane protein complex
GO:0016021	integral component of membrane
GO:0005783	endoplasmic reticulum

Vocabulary: **INTERPRO**
Term	Definition
IPR008504	Emc6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0072546	ER membrane protein complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G001110	Lsi06G001110	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G001110.1	Lsi06G001110.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G001110.1.five_prime_UTR.1	Lsi06G001110.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G001110.1.CDS.1	Lsi06G001110.1.CDS.1	CDS
Lsi06G001110.1.CDS.2	Lsi06G001110.1.CDS.2	CDS
Lsi06G001110.1.CDS.3	Lsi06G001110.1.CDS.3	CDS
Lsi06G001110.1.CDS.4	Lsi06G001110.1.CDS.4	CDS
Lsi06G001110.1.CDS.5	Lsi06G001110.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008504	ER membrane protein complex subunit 6	PANTHER	PTHR20994	UNCHARACTERIZED	coord: 8..103 score: 5.8