Lsi06G001110 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G001110
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionER membrane protein complex subunit 6
Locationchr06 : 1074274 .. 1077919 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACACTTTGGTTCTTTCTCTGGGTTCTCCCCTCTACCATCTCTACCACAATCGCAAGTCGCACATCACCATCAGCTCCCTTCTCCCTCTCCATCGCTGCCATTATCGGTCGCCGGCTTCCTCCCATTTTCCGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCAGAAGTTATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGGTTTTTCGATGCTTCAAAGAACTTTACTTGCTTGCTGATACCAATTGTCTTTTATTTCCTCCTGTATCGAAAGTAGTAGAATCCTATCAATTTTCTTAGAATTGGAATCCTTCCGTGACAGACCTTTTCTGTTTCTAGTTCTATCCTCTTAATTAGCAGCTTATGTAACTGTAGATTTAATTGGTTGACCTAAAATTTTAATGAGTCCTGAGCACTGTGCGACGGAGACTGATACAATTCAATTTCTCGGGAGTGTTTGCATTCAAATTGAGTTGCTACAAATATCATATTATGAATTTGTTTTTCTTTTGAGTTTTGTGAATTTAGATCGTAAACTTCTATTATCTTTTGCAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGGTATGCAGCCTCTGCCCTTATATTTTAGATTGGACGAATTAATAAGTAATTTGAATTTTCAGATCTAATGATTCTAGGGTTTCTAAGTTACCAACCCTTTCTTGTTAATTGCATACGTTTGTTCTGTATTTACTATTTAGAAGAATTGAAGAAATTAGTTACAACTGGTATTTTCACCCACTTCACTCTCCTGCTTCTACTCCTGGAATATACAAGTTTGGAATCAAAGGAGAAGACAGGTCACAGTACGATCTTCAATGTTATCGTGCTGGAGGCAAGTCGAAGAAAAGACAGTACAATTCTATTTCTTTTAGAAGGCAGTATGATGCGAGAAGAGGGAAGGCCCAATTCTAAGTTGAATGTTCTTTTAACCACCTTGGGATCCCCTTTAGGGTGATTTCTTATCCTCCTGGCTAGGCTTTCATAGATTGTTGATTTTTGAACAATTTTCTCATCTCCTATTAAGGAAAATATAGGAAAATGCAATTCGAATGAGGGTTTACTGAGTATAAGAACTAATGTAGATTTTGAAGAAAGGAAAGATTGTAGTTTAAGGTTATTTCGAAAACCTTGTGATAAGAGATATCTTGGACCCTTGGTGACCAGAAACTTTAAATCTAAATGGATAAATAAATGGGATAACAATGTGAGTTTGTTTGATCATACTGATGGGGAAAGGAAATATAAAATAGATGAACAAGTTGATTTTAGGAAATGGTCCATTTGAGATGTGGAAATGTTAAGGGTTCACTGTACACTTGCAGCAGGATAGAGGTCTCTAGAGCCTTGGGGTCGGATTGGTTTGCAATTCCCACAGTGAAACTTGAATGGCCTGAAGATCTGAGTTTGATAAAATTGAAAAAAAGCGAATAAATCCCGGTCCTTACGTAATCCAATGGGCAACTTGGCTTTATTTCAAGATTGTGCTAGTAAACAATGATTTGATGAAGGTTTTCAGGGAATTCTATGATAGGGGTGGTTTACGGGATGTATTAGTGCTACTCATATTTGCTTAATACCTAACAAGTATGGGGCTATGGACTTTCAGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGGTAAAGCTGTAGGGGTTTGGTTTTGCATGGAGAAGTTAGATTAGTCATTAGTGGTGATTTAAATCCTTCATTATTTTTTCCCATGTTTGCGTGAGAACATAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGTGGGCGTCGGTTATGACTTCCTTTTTTTTTTTTGAGGTATGCTTGTATGCTACATTTTTTTCTCAAGGGAAGTTGGTGATTTGTCTAAGAAAAACAGTTGCAACAAATGTAGTCATCATCTAAGTTGGAGTACTGTTTTCTTGCGTAAAGATTTTAGAGGATTAAGACTTGGTAAGTTGCCTGAGAAAAAACATGGCTTTGCTTGCCAAGAGGATATGGAATTTCCGCTGGAAAGCCAAAGGTGGAAGCATTTTGCTGATGGTATAAGAAGTAAATATTGGATTCCTCTGGATAGCATTTGAAGGAACGCATAAGGTGTAGCATGGAAATCAATAGTATATTTCAAATCCTTGGTGGAAGCGTTAGATGTCTCAAAACAAAGAAATGTGAAGAGAATCAAATTTGGGAGGATATTCTTATTAATTTGGTGGTGAGACCTAAGAACAGGGAAGATATTAGGTTTTGGAGTTGAGATTTCAGGATTCTTCACTATTTCCTTCATTATAATTACCTTTGGTTTTGTACCCTAAAAATTATCATAAGTTTTTCTCAAACTAATTTTATTTGTTTATGTTTTATGTATTTTTTTTTTTTTAAAATTATGATTACCATTTCGAATAACGTAAATGAGATATCCTCCTTTCCTTTTCATTGTTTAAAGAAAAGGAGAGAAATCTCCTTTTCCTACACTAATTCTACAGCCTAACATGATAAAGCATATACCCTATCCTTAATTGGTTCGAATCAATTCCAGAATTCTTGAGTTTCCCTAAAGCCCAGATTGATCTCTGATCATCTTTTCGTAGAGACTAGGGACATAATTTTTCTGTTTGACATTAGAAAATGTTTGCTCATTTTCTCAGCATACTATAGATGCTAAAATTAAGAGATTATCTTACACTATATTATTTGTCTTGTGATGACTCATTATTCTTATGTGTTTTGGCATGCAACAACCTATGGGCACTGACCCTTTGTTCTATTTTTGCAGTCGTTCGTGCTTTTCTGGACGTATCCTTTCCATAACTTTATGGTTTATACATAATGTTTGATAGTATACCAATTGCGTGTTTAGGACAATCTTTCAATAGGATAAAAGTATTTTTTGGCTTGCTTAAAATACTTTCAAAATTTTTGAACTTTACACTATTAAAACATTCTGAAGTGGTTTTTTTTTTTTTTTTTTTTTTCTTCCTCTTCAAGAAAACACTGAATGATACTTTCTTTAAGAGGTAGTTCTCAAATACATACCCACAGAGTATTTCTAATTTACTTTTATTTCACATTTCCTCCAAATTCTTGCTTCTAGAAATTGTATGCTGACCGTGCTTTTCTTAACATGAAAAAGTTTCGCATACGACATTGTTCACATATTCTGAGTCCAAATGCTGGCAGGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

mRNA sequence

AACACTTTGGTTCTTTCTCTGGGTTCTCCCCTCTACCATCTCTACCACAATCGCAAGTCGCACATCACCATCAGCTCCCTTCTCCCTCTCCATCGCTGCCATTATCGGTCGCCGGCTTCCTCCCATTTTCCGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCAGAAGTTATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Coding sequence (CDS)

ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Protein sequence

MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMNSEYSSFNTSLVIPSKRNQMRFWQRGKVKASMGLHGQGFGDFGSSGAFERESFNIWSLMRSNVTLNSNSRVAAAFCTIRLETGNSKQ
BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_HUMAN (ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_MOUSE (ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_BOVIN (ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-07
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAA 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAR 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_XENTR (ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1

Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLIGGL 93

BLAST of Lsi06G001110 vs. Swiss-Prot
Match: EMC6_XENLA (ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1

Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLVGGL 93

BLAST of Lsi06G001110 vs. TrEMBL
Match: A0A0A0LZ06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 98/132 (74.24%), Postives = 107/132 (81.06%), Query Frame = 1

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM---------NSEYSSFN 120
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM         +  +SS  
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTPRHCSFSSIQ 120

Query: 121 TSLVIPSKRNQM 124
            S   P+  N++
Sbjct: 121 RSRFSPNATNKL 132

BLAST of Lsi06G001110 vs. TrEMBL
Match: D7SYI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.6e-35
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 1

Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG + S ASEKKS++A +D+P FNAENLQ+N+KIIYYSRTFLSIIGGVIAGILGFTG T
Sbjct: 355 MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 414

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GFIFYFLVMAITS+ L AKA FS HSYF+SWN+I+LDGFL GLM+
Sbjct: 415 GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMS 459

BLAST of Lsi06G001110 vs. TrEMBL
Match: V4RXU7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 1

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMNSEYSSFNTSLVIPSKR 120
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM     SF      PSK 
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLM-----SFVLFWTYPSKN 160

Query: 121 NQ 123
           ++
Sbjct: 164 SK 160

BLAST of Lsi06G001110 vs. TrEMBL
Match: V4TZX7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.1e-34
Identity = 77/104 (74.04%), Postives = 92/104 (88.46%), Query Frame = 1

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM+
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMS 147

BLAST of Lsi06G001110 vs. TrEMBL
Match: V4S1H0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.1e-34
Identity = 77/104 (74.04%), Postives = 92/104 (88.46%), Query Frame = 1

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S + + KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           F+FYFL+MAITS+ L AKA FS HSYF+SWN+ILLDGFL GLM+
Sbjct: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMS 104

BLAST of Lsi06G001110 vs. TAIR10
Match: AT5G49540.1 (AT5G49540.1 Rab5-interacting family protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-30
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 1

Query: 8   ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLV 67
           +SEK+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+V
Sbjct: 3   SSEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVV 62

Query: 68  MAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           M ITS+ L AKA FS+  YF+SWN++L DGFL GLM+
Sbjct: 63  MLITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLMS 99

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|700210966|gb|KGN66062.1| (hypothetical protein Csa_1G569390 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 98/132 (74.24%), Postives = 107/132 (81.06%), Query Frame = 1

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLM---------NSEYSSFN 120
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM         +  +SS  
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTPRHCSFSSIQ 120

Query: 121 TSLVIPSKRNQM 124
            S   P+  N++
Sbjct: 121 RSRFSPNATNKL 132

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|659099503|ref|XP_008450632.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 1

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           FIFYFLVMAITS+ALAAKA FS HSYFES NQILLDGFL GLM+
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLMS 104

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|449435645|ref|XP_004135605.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 4.7e-41
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = 1

Query: 1   MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           FIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLSGLM+
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMS 104

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|720047499|ref|XP_010270839.1| (PREDICTED: ER membrane protein complex subunit 6 [Nelumbo nucifera])

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 80/105 (76.19%), Postives = 96/105 (91.43%), Query Frame = 1

Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG+  S AS+KK++D+++DLP FNAENLQNN+KIIYYSRTFLSIIGGVIAGILG+TGLT
Sbjct: 1   MAGHEDSGASKKKTADSSNDLPTFNAENLQNNMKIIYYSRTFLSIIGGVIAGILGYTGLT 60

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GF+FYFL+MAITSL LAAKA FS HSYF+ WN++LLDGFL GL++
Sbjct: 61  GFVFYFLIMAITSLGLAAKAKFSIHSYFDCWNRLLLDGFLGGLLS 105

BLAST of Lsi06G001110 vs. NCBI nr
Match: gi|1009172447|ref|XP_015867276.1| (PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba])

HSP 1 Score: 156.4 bits (394), Expect = 5.0e-35
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 1

Query: 1   MAGYS-SAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG++ S ASEKKS++A +DLP FNAEN+Q+N+KIIYYSRTF+SIIGGVIAGILGFT LT
Sbjct: 1   MAGHNDSNASEKKSNEATNDLPTFNAENMQSNMKIIYYSRTFMSIIGGVIAGILGFTSLT 60

Query: 61  GFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN 105
           GFIFYFLVMAITS+ L AKA FS HSYF SWNQI+LDGFL GLM+
Sbjct: 61  GFIFYFLVMAITSVGLTAKAGFSIHSYFSSWNQIVLDGFLGGLMS 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EMC6_HUMAN2.6e-0739.02ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1[more]
EMC6_MOUSE2.6e-0739.02ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1[more]
EMC6_BOVIN4.4e-0739.02ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1[more]
EMC6_XENTR1.7e-0640.00ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1[more]
EMC6_XENLA2.2e-0640.00ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LZ06_CUCSA1.5e-4174.24Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1[more]
D7SYI1_VITVI4.6e-3578.10Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=... [more]
V4RXU7_9ROSI2.3e-3467.21Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1[more]
V4TZX7_9ROSI5.1e-3474.04Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1[more]
V4S1H0_9ROSI5.1e-3474.04Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G49540.13.0e-3065.98 Rab5-interacting family protein[more]
Match NameE-valueIdentityDescription
gi|700210966|gb|KGN66062.1|2.1e-4174.24hypothetical protein Csa_1G569390 [Cucumis sativus][more]
gi|659099503|ref|XP_008450632.1|2.1e-4190.38PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo][more]
gi|449435645|ref|XP_004135605.1|4.7e-4189.42PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus][more]
gi|720047499|ref|XP_010270839.1|2.3e-3576.19PREDICTED: ER membrane protein complex subunit 6 [Nelumbo nucifera][more]
gi|1009172447|ref|XP_015867276.1|5.0e-3578.10PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0072546ER membrane protein complex
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
Vocabulary: INTERPRO
TermDefinition
IPR008504Emc6
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0072546 ER membrane protein complex
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G001110.1Lsi06G001110.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008504ER membrane protein complex subunit 6PANTHERPTHR20994UNCHARACTERIZEDcoord: 8..103
score: 5.8

The following gene(s) are paralogous to this gene:

None