ClCG03G017390 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G017390
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Transmembrane protein
Location	CG_Chr03 : 32495692 .. 32501057 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAGAGAGAGAAAGAAAAAAAAGCCTCTCTTTCTTTCTCCTATAATTTCATTATTAATTTTTTTAACACTTTAGTTCTTTCTCCTACACTGTTCTTTTTCTGGGTTCTCCCCTCTCCATTTATACCACTCCCGCACATCACCATCAACTCCCTTCTCCCTCTCCGTCGCTGCCATTATCGGTCGCCGGCTCTCTCCCATTTTCTGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCTGAAGTTATGGCGGGATACTCCTCCGCTGTTTCTGAGAAGAAATCGTCTGATGCGGCCGACGATTTACCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGGTTTTTCGATGCTTCAGCGAATTTTACTTGCTTGCTGATACCAATTATCTTTTATTTCCTTCTGTATCGAAAGTAGTAGAATCCTATAAATTTTCTTAAGAGTCGGAATCCTTCCGTGACAGACCTTTTCTTTTTCTAGTTCTATTCTCTTAATTACCTGCTTATGTAGCTGTAGATTTAATTGGTTGACCTAAAATTTTAATGGATCCCGAGCACTGTGCGACGGACAATGATACGATTCAATTTCTCGGGATTGTTTGCATTCAAATTGAGTCGCTACAAAATTGGACCCAAGATGATTTTTATTGATTATCATGATTTTTTTTTTCTTTTGAGTTTTGTGAATTTAGATCGTAAACTTCAATTATCTTTTGCAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAACCAAGGCTGGATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGGTATGCAGCCTCTGCCCTTATTTTTTAGATTGGACAAAATTACAAGCATAATAGAGAGGAAATAGGAGAATTGAATTATTTTTTTTACTTGAAACTGACTTCTGTTGAGTTCTTTTGTATTAAAAAATAATTTGAATTTTCAGCTCTAATGCTTTGAGGGTTTATAAGTTACCAACCCTTTCTTGTTAATTGCATCCGTTTCTTCTGTATTTACTATTTAGAAGAAATTAGTAAGAACTGGTATTTTCACCCACTTCACTCTCCTGCTTCTACTCCTGGAATATATAAGTTTGGAATCAAAGGAGAAGGCAGGTCATAGTACTTCTTCAATATTATTGTGCTGGAGGCAAGTCGAGAAAAAGTGCGAGACGAGGGAAGGTGCAATTCTAAGTTGAATGTTCTTTTAACCACCTCGGGATCCCCTTTAGGATGATTTCTTATCCTCCTGGCTAGGCTTTCATACACTGTTGATTTTTATACAATCTTCACATCTCCTATTAAGGAAAATATAGGAAAATGCAATTCGAATGAGGGTTTACTGAGCATAAGAACTAATGTAGATTTTGAAGAAAGAAAGGATTGTAGTTTAAGGTTATTTTGAAAATTTTGTCCAAGTATGAGATATCTTGGACCATTGGTGATCGAAAATTTAAATCTAAATGGATAATTAAAATCGGATAACAATTTGAGTTCCTTTGTGATACCGATGGGGAAAGGGCATATAAAATAGACGAACAACTTGATTTTAGGAAATGGTCCATCTGAGATGTGGAAATATTAAGGGTTCACTGTACACTTGCAGCAGGATAGAGGTCTCTAGAGCCTTGGGATCAGATTGGTTTCCAATTCTCACAGTGAAACTTGAATGGCCTGAGGAACTGAGTTGGATAAAACTGGAAAAAAAGGGAATAAATCCCGTTCCTCCCATAATCCAATGGGCAACTTGGCTTTATTTCAAGATTGTGCTAATAAGCAATGATTTGATGAAGGTTTCAGGGAATTCTATGATAGGGGTGGTTTACAGGATGTATTCTGCTATTCAAATTTGCTTAATACCTAACAAGTATGGGGCTACGGAACTTTCAGAATTCAGAGTATAGTAGTTGCAACATTAGCTTAGTCATTGGAAATATTAGTAGTGCTACTTAAGAGAGGTGATGGACTCTACCATTTTCAAAGGTCCAATGTCATTCCTTCCAAGAGAAGTCAGATGAGATTTTGCCAAGGTAAAGCTGTAGGGGTTTGGTTCTGCATGGAGAAGTTAGATTAGTCATTAGTGGGTGATTTAAATCCTTCATTTATTTTTTCCTATATATGCGTGAGAAACAGGTGTCTGAGCGGTCAGGTTTTGGAGACTTTGGATCAAGGGGTGCCTTCAAAAGGTTAATTTCTTTGTCCTTATTATGAGAGATCAGAGGTACGATTAGAGCCACTAGAGTTCTTAGGATGAATGCCTCTCTTTCAATTCTTCAATTGCAATCGAATTGAAGACTTTTAGTATAGTTGGGGCAATAAAATGTTCACTTGAGTTATTTTCAATTTGCTGCTGTTAGCAGTTTCTTCTTCTTCTTCTTCCTCCTTTTTTTTTTTTTTTTTTTTTTTATAAGAAACAATTTCATTGATGAATGGAATATCCAAAGCGTACAATGAGGTAGACCAAAACAGGAAAACCCAAAAAAATACAAAAGCAAGCCAAAATAGAGAGATAATAATAGATAACAACAAACAATGGTAGATTGATACCAGCCAATCGAACAATGGGTGTGAAAAAGGGAATGAAGATTCGATCCAAGAAACAAAAAAAATCACATAAACAAGGGAGGCTGAACATCCACACAAAGGCCGGATCAACTAGAAGGCCGCTTGATAGGAACCAAAGAAGTCATACAGAAATAGAACCCTCTCTATGCGTAGGTTGAGCCTTCCTTTCGTATGAAATAGAGCTTTCTAGATTCCGTAATTCTCTCAATCCTCTTTTCTTCTTCGCCGATGATTGGTTGGGTTGTTTCTTTGTTGCGATTGCCTTTATACAAATACCAAGATCCCTAAACCATGGAGCTAGAGCATCAAATGTGGAGTTGGGTTAAAGGGACCAACTGAGGAATGATGAACATAATCGTAGCAATTACCTTCTATCCTAGATGGGATAGGAATGGGGAGAAACCGGCTAAGTAGGGATGGGTTTAGATAGGTACGCATCTTTGTCGGTGTCTGGAGGTAAAGCAATGATGGCGGTGGAGTGCTTGATGTCAGGGCTGAAAAATAATCTTTTTGTATGGTAAGGGGTGGGTGATGTTGGTATTACTGGAAGAAGGAGAAATCAAGGGAGTAGAAGGTGGAAGATTTTCGGATGAATAATGCCTATTGTTGGAAGATATTTCTATTTGGAAGAAAAATGCAAAATGGATAACTTGTTCAACATTGTCAAACCTTGTGAGTTTATGTCGGCCCTTAAGGTCAACTATGATAAAGGTAGTGTTTGGTTGATTGGAGTCCCTCGTTAGGTTCGATGTGCTCTTTTTGGAGTGGCGACTGTGCTAAGTTGTTTCAGGACCACTACTTCGCTCTTCGTGTTTCTGGTTTTAGACAGCTTGTCACGTATCTTTTACTACTTTGATTGAGGAGTTTCTCCTCTATTCGCTATTCTAGGAGAAATGTTTTTTTTTTATGGAAAGTAGGGATGTGTGTTTTGTTGTGTATTTGTTGGGGGGATCGAAAGGGAGTCTTTTGATATTTGGTGTTGGTCCCTTGTGTGATTTAATTGTCACCCTGTGGGGGTCCATGATGAGTTCCTTTTTTTTGGGNGGGGGGGGGGGGGGGGGTTGCTAGTATGCATTCAGTTTTTCTCAATGAAAGTTGGTGTTTTGTCTAACAAAAAAGGTTGCAACAAATGTAGTCATCATCCAAGTTGGAGTGACGTTTGCTTGCATAAAGATTTTAGAGGATTAGGACTTGGTAAATTGCCTGAGAAAAACACGGCTTTGCGTGCTAAGAGGATGCGGAATTTCTGCTGGAGAGCCAAAGGTGGAAGCATTTTGTTGATGGTATAAGAAGCAAATATTGGGTTGCTCTGGATGGCATTTGAAGGAACAACATAAGATGTAGCATGGAAATCAATAGTGTAGTTCAAATCCTTGGTGGAAGCGTTAGGTGAAGAGAATGAAATGAGAGGATATTCTTATTGATTTGGTGGTTAGACCTAAGAGCAGGGAAGATATTAGGTTTTGGAGTTGAGATTTCAAGGTTCTCCACTATTTCCTTCATTATGATTAGCTTTGGTATTGTACCCTAAAAATTATCAGAAGTTTTTCTTAAACTAATTTTATTTGTTTATGTTTTCTGTGTGTATATATATTTTAAAAGAATTATGATTACCATTTCGAATAATGTAAACGAGAAAGAAATCCTCCTTTGCTTTTCATTGTATAGAGAAAAGGAGAGAAATCTCCTTTTCCTACACTAATTCTACACAGTCTAACATGAGAAAGCAAATGCCCTATCCTCAATAGGTTTGAATCAATTCCAGAATTCTTGAGTTTCCATAAAGCACAGATTGATCTCTGATCATCTTTTTCCGTAGAGATTAGGGGGCATAATTTTTTCTGGTTGACATTAGAAAATGTTTGGTCATTTTCTCAGCATACTATAGCTGCTAAATTAAGAGATTATCTTACACTATGATTTGTCTTGTGATGACTCATTATTTTTATGTGTTTTGGTATGCAACAACCTACGGACACTAAACCCTTTGTTCTATTTTTGCAGTCGTTCGTGCTTTTCTGGACGTATCCTTTCCATAACTTTATGGTTTATACATAATGTTTGATAGTATACCAATTTTGTGTTTGGGACAATCTTTCAATATGATAAAAGTAAGTTTTGGCTAACTTAAAATACTTTCAAAATTTCCGAACTTTACACTACTAAAACATTCTGAATGGTTTTTTTCTTCTTCTTCTGAAAGAAAACACTGAATGGTACTTTCTTTAAGAGGTAGTTCTCGAATACATACCCACAGAATATATAGCTCAGTTCCTTATATAAAGTACATTGCTTCCCTTATGTATTTGTAATTTACTTTTATTTCACATTTCCTCCAAATGCTTGCTTCTAGAAGTTGACTTTGTTTTTCTTGACATGAAAAAGTTTCGCATACGATATCGTTCACATATTCTGAGTCCAAATGCTGGCAGGACTTCAAATTCTAGAGTAGCTGCAGCTTTCTGTACACTTCAACTCGAGACTGGGAGTTCCAAATGAATAAATGACTTTTGTCCATCAAAATGATAATTAGATTGAGTTATATCTTTTGATCCCCTTTCACTTTAATGATATGGTGTTAACTTCCTTTCTAATTCTTCATTGCTATGTTTAGAATCTTATAAGAGCAGCATTTTCCAGTGATGGGCATAGATTTTGTTTATTCTTTCTAG

mRNA sequence

ACAAGAGAGAGAAAGAAAAAAAAGCCTCTCTTTCTTTCTCCTATAATTTCATTATTAATTTTTTTAACACTTTAGTTCTTTCTCCTACACTGTTCTTTTTCTGGGTTCTCCCCTCTCCATTTATACCACTCCCGCACATCACCATCAACTCCCTTCTCCCTCTCCGTCGCTGCCATTATCGGTCGCCGGCTCTCTCCCATTTTCTGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCTGAAGTTATGGCGGGATACTCCTCCGCTGTTTCTGAGAAGAAATCGTCTGATGCGGCCGACGATTTACCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAACCAAGGCTGGATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGTTTCGCATACGATATCGTTCACATATTCTGAGTCCAAATGCTGGCAGGACTTCAAATTCTAGAGTAGCTGCAGCTTTCTGTACACTTCAACTCGAGACTGGGAGTTCCAAATGAATAAATGACTTTTGTCCATCAAAATGATAATTAGATTGAGTTATATCTTTTGATCCCCTTTCACTTTAATGATATGGTGTTAACTTCCTTTCTAATTCTTCATTGCTATGTTTAGAATCTTATAAGAGCAGCATTTTCCAGTGATGGGCATAGATTTTGTTTATTCTTTCTAG

Coding sequence (CDS)

ATGGCGGGATACTCCTCCGCTGTTTCTGAGAAGAAATCGTCTGATGCGGCCGACGATTTACCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAACCAAGGCTGGATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGTTTCGCATACGATATCGTTCACATATTCTGAGTCCAAATGCTGGCAGGACTTCAAATTCTAGAGTAGCTGCAGCTTTCTGTACACTTCAACTCGAGACTGGGAGTTCCAAATGA

Protein sequence

MAGYSSAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLMFRIRYRSHILSPNAGRTSNSRVAAAFCTLQLETGSSK

Homology

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BLAST of ClCG03G017390 vs. Swiss-Prot
Match: EMC6_HUMAN (ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALATKAG 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KAG
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

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BLAST of ClCG03G017390 vs. Swiss-Prot
Match: EMC6_MOUSE (ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALATKAG 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KAG
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of ClCG03G017390 vs. Swiss-Prot
Match: EMC6_XENTR (ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 31/75 (41.33%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALATKAGFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+G   + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLIGGL 93

[Close]

BLAST of ClCG03G017390 vs. Swiss-Prot
Match: EMC6_XENLA (ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-09
Identity = 31/75 (41.33%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALATKAGFSSHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+G   + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLVGGL 93

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BLAST of ClCG03G017390 vs. Swiss-Prot
Match: EMC6_BOVIN (ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-09
Identity = 32/82 (39.02%), Postives = 42/82 (51.22%), Query Frame = 1


Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALATKAG 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAR 71

Query: 81  FSSHSYFESWNQILLDGFLSGL 103
              + YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of ClCG03G017390 vs. TrEMBL
Match: A0A0A0LZ06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 92/103 (89.32%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 1   MAGYSSAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS  S+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ALA KAGFS HSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

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BLAST of ClCG03G017390 vs. TrEMBL
Match: D7SYI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 1   MAGYS-SAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG + S  SEKKS++A +D+P FNAENLQ+N+KIIYYSRTFLSIIGGVIAGILGFTG T
Sbjct: 355 MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 414

Query: 61  GFIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMAITS+ L  KA FS HSYF+SWN+I+LDGFL GLM
Sbjct: 415 GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLM 458

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BLAST of ClCG03G017390 vs. TrEMBL
Match: V4TZX7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MAGYSSAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S +V+ KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           F+FYFL+MAITS+ L  KA FS HSYF+SWN+ILLDGFL GLM
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLM 146

[Close]

BLAST of ClCG03G017390 vs. TrEMBL
Match: V4RXU7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MAGYSSAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S +V+ KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           F+FYFL+MAITS+ L  KA FS HSYF+SWN+ILLDGFL GLM
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLM 146

[Close]

BLAST of ClCG03G017390 vs. TrEMBL
Match: A0A067G911_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0312911mg PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MAGYSSAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MA +S +V+ KKS+D ++DL IFNAENLQ+N+K+IYYSRTFLSIIGGVIAGILGFTGL G
Sbjct: 44  MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 103

Query: 61  FIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           F+FYFL+MAITS+ L  KA FS HSYF+SWN+ILLDGFL GLM
Sbjct: 104 FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLM 146

[Close]

BLAST of ClCG03G017390 vs. TAIR10
Match: AT5G49540.1 (AT5G49540.1 Rab5-interacting family protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-32
Identity = 64/95 (67.37%), Postives = 75/95 (78.95%), Query Frame = 1


Query: 9   SEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVM 68
           SEK+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+VM
Sbjct: 4   SEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVVM 63

Query: 69  AITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
            ITS+ L  KAGFS+  YF+SWN++L DGFL GLM
Sbjct: 64  LITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLM 98

[Close]

BLAST of ClCG03G017390 vs. NCBI nr
Match: gi|659099503|ref|XP_008450632.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 9.8e-44
Identity = 93/103 (90.29%), Postives = 97/103 (94.17%), Query Frame = 1


Query: 1   MAGYSSAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS  S+KKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ALA KAGFS HSYFES NQILLDGFL GLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLM 103

[Close]

BLAST of ClCG03G017390 vs. NCBI nr
Match: gi|449435645|ref|XP_004135605.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-43
Identity = 92/103 (89.32%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 1   MAGYSSAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS  S+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ALA KAGFS HSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]

BLAST of ClCG03G017390 vs. NCBI nr
Match: gi|700210966|gb|KGN66062.1| (hypothetical protein Csa_1G569390 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-43
Identity = 92/103 (89.32%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 1   MAGYSSAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS  S+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ALA KAGFS HSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]

BLAST of ClCG03G017390 vs. NCBI nr
Match: gi|823164582|ref|XP_012482233.1| (PREDICTED: ER membrane protein complex subunit 6-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 168.7 bits (426), Expect = 7.2e-39
Identity = 86/136 (63.24%), Postives = 106/136 (77.94%), Query Frame = 1


Query: 1   MAGYS-SAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG+S S+ SEKKSS+A +D+P F+ EN+QNN+K+IYYSRTF+SIIGGVIAGILGFTG  
Sbjct: 1   MAGHSDSSSSEKKSSEAMNDVPTFSTENMQNNMKVIYYSRTFMSIIGGVIAGILGFTGFM 60

Query: 61  GFIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLMFRIRYRSHILSPNAGR 120
           GFIFYFLVMAITS+ L  KA FS H YF+SWN+I+LDGF+ GLM  +R+ ++IL  N   
Sbjct: 61  GFIFYFLVMAITSIGLIAKAKFSVHLYFDSWNRIILDGFMGGLMICLRHCAYILKKNLQH 120

Query: 121 TSNSR---VAAAFCTL 133
            +  R   VA AFC L
Sbjct: 121 LTGKRSQVVALAFCCL 136

[Close]

BLAST of ClCG03G017390 vs. NCBI nr
Match: gi|1009172447|ref|XP_015867276.1| (PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba])

HSP 1 Score: 163.7 bits (413), Expect = 2.3e-37
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MAGYS-SAVSEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLT 60
           MAG++ S  SEKKS++A +DLP FNAEN+Q+N+KIIYYSRTF+SIIGGVIAGILGFT LT
Sbjct: 1   MAGHNDSNASEKKSNEATNDLPTFNAENMQSNMKIIYYSRTFMSIIGGVIAGILGFTSLT 60

Query: 61  GFIFYFLVMAITSLALATKAGFSSHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMAITS+ L  KAGFS HSYF SWNQI+LDGFL GLM
Sbjct: 61  GFIFYFLVMAITSVGLTAKAGFSIHSYFSSWNQIVLDGFLGGLM 104

The following BLAST results are available for this feature:

BLAST of ClCG03G017390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EMC6_HUMAN	7.1e-10	40.24	ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1	[more]
EMC6_MOUSE	7.1e-10	40.24	ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1	[more]
EMC6_XENTR	4.6e-09	41.33	ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1	[more]
EMC6_XENLA	6.0e-09	41.33	ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1	[more]
EMC6_BOVIN	7.8e-09	39.02	ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1	[more]

BLAST of ClCG03G017390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ06_CUCSA	1.5e-43	89.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1	[more]
D7SYI1_VITVI	1.4e-36	76.92	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=...	[more]
V4TZX7_9ROSI	1.8e-36	74.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1	[more]
V4RXU7_9ROSI	1.8e-36	74.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006078mg PE=4 SV=1	[more]
A0A067G911_CITSI	1.8e-36	74.76	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0312911mg PE=4 ...	[more]

BLAST of ClCG03G017390 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49540.1	1.1e-32	67.37	Rab5-interacting family protein	[more]

BLAST of ClCG03G017390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099503\|ref\|XP_008450632.1\|	9.8e-44	90.29	PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo]	[more]
gi\|449435645\|ref\|XP_004135605.1\|	2.2e-43	89.32	PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus]	[more]
gi\|700210966\|gb\|KGN66062.1\|	2.2e-43	89.32	hypothetical protein Csa_1G569390 [Cucumis sativus]	[more]
gi\|823164582\|ref\|XP_012482233.1\|	7.2e-39	63.24	PREDICTED: ER membrane protein complex subunit 6-like isoform X1 [Gossypium raim...	[more]
gi\|1009172447\|ref\|XP_015867276.1\|	2.3e-37	77.88	PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008504	Emc6

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum
GO:0016021	integral component of membrane
GO:0072546	ER membrane protein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0072546	ER membrane protein complex
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G017390.1	ClCG03G017390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008504	ER membrane protein complex subunit 6	PANTHER	PTHR20994	UNCHARACTERIZED	coord: 8..103 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G017390	Csa1G569390	Cucumber (Chinese Long) v2	cuwcgB039
ClCG03G017390	MELO3C015305	Melon (DHL92) v3.5.1	mewcgB240
ClCG03G017390	Cla005190	Watermelon (97103) v1	wcgwmB224
ClCG03G017390	Cla97C03G067770	Watermelon (97103) v2	wcgwmbB186
ClCG03G017390	Bhi02G001760	Wax gourd	wcgwgoB363
ClCG03G017390	CSPI01G26450	Wild cucumber (PI 183967)	cpiwcgB043
ClCG03G017390	Cucsa.181900	Cucumber (Gy14) v1	cgywcgB323
ClCG03G017390	Lsi06G001110	Bottle gourd (USVL1VR-Ls)	lsiwcgB362
ClCG03G017390	CsGy1G025700	Cucumber (Gy14) v2	cgybwcgB037
ClCG03G017390	MELO3C015305.2	Melon (DHL92) v3.6.1	medwcgB231
ClCG03G017390	CsaV3_1G038810	Cucumber (Chinese Long) v3	cucwcgB042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G017390	Watermelon (97103) v2	wcgwmbB189
ClCG03G017390	Watermelon (Charleston Gray)	wcgwcgB125
ClCG03G017390	Cucumber (Gy14) v1	cgywcgB036
ClCG03G017390	Cucurbita maxima (Rimu)	cmawcgB055
ClCG03G017390	Cucurbita moschata (Rifu)	cmowcgB046
ClCG03G017390	Wild cucumber (PI 183967)	cpiwcgB049
ClCG03G017390	Melon (DHL92) v3.5.1	mewcgB381
ClCG03G017390	Cucumber (Chinese Long) v2	cuwcgB135
ClCG03G017390	Melon (DHL92) v3.5.1	mewcgB245
ClCG03G017390	Watermelon (97103) v1	wcgwmB242
ClCG03G017390	Cucurbita pepo (Zucchini)	cpewcgB328
ClCG03G017390	Cucurbita pepo (Zucchini)	cpewcgB601
ClCG03G017390	Bottle gourd (USVL1VR-Ls)	lsiwcgB105
ClCG03G017390	Bottle gourd (USVL1VR-Ls)	lsiwcgB364
ClCG03G017390	Melon (DHL92) v3.6.1	medwcgB237