Lsi08G001900 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G001900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RmlC-like cupins superfamily protein
Location	chr08 : 4022600 .. 4024856 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTGAGAGACTGGGGATCAAAGTTGAGAAGAATCCACCTGAATCCAAGCTTACCGAACTCGGCGTCCGTCAATGGCCCAAGTAATTTTGATTTCTCTATCTAGTTTCTTGCTTCTTTTTCTCCATTTAATTGCTGCAATGTCATTGTTACTGCCCCCAAATTGTTGCTAGTTGTTGATGTTAATGGCCCATGTAGGTGCTCTTTTAATCATCGAGCCTTGATATAAACGATGTTAGCAATTTTGGAATTGGGTTTCAATCTGTCTGAAGAGTTAATGAATGTTGATAAATAGATGGATGATAGCATGCTTAAGGAGTTGTTATGTTGATCTTTGATCACTTCCAGCTTCTGGGTTATAAGTTGTGCATATTGTCATTTCTCGTTTGGCTTTTAGCTGGGTAGGTAAGAACTAAGAACCACGAACCACTCTGGGTTGGTTCAGTGGTCAAGAAGAGCTAATGTAAGTAATGAAAAGCATAGAGATAATGGATTCAAGGTATGGTAGCCACCTAGGTAGGATTTAATATCTCATGAGTTTTCTTGTTAAACAAATGCAGTAGGATTGCACAAACTAGCACACTCACAAATATCAAAATATTACCATGGAATAAAATATATTTTTCTTCAAGATCTTCATCATTTATATATTTACTAGTGTCAGAATCACTGGCTTTAGAAGAAGGTTCCGACTCAAAGAGTGTTGGAAGTGGAACAATTGCCAAAATACAATGGGAGAAGGAGTACTCTAAACATAAATATAACAGAAAACCAACACGGACAATATATTAATTAGTAAAAACAAGGGTTTAGAAAGCCTGTTTTGGGTTGACGCCTGTTTCTGAATTTTGCCCTTAGGGAAGATGCGTCCTAACTATCATTGAGTTATTCGGCTTGCCACTCCCAACATATAACACCTTTGAAGAGATCTTGTATGCAACTAAGTTGTCTGACAAAGCTTGTTTCCCATTTATGCTTAGTGAAAGAGAGAAAAAGAATCACTTTCTGTACAAGAGACTTTGATTAATAACTAACAACTTTGTGCGAAAACTCTCTATGATGCCAATTGAATCTCTAAAACTAAAGCAACTAGTGGTTACATACTTTGTGTGGTGGTGCAATATCATAGAAATCTACTAAAAAGACATTAATTTTTTCACCTATTTAAAGCTAAATTAATTGGCTTAGACTCAATTAGTTAGGGAAAGAATGTTTAAGAAGTTTAATGGCTAGTATTCTTGAACTTTAATTGGTAGTCTAGATGTGCCTATATTTTGTGATAATCAAGCTACATAGCTAAGACTTATGGTAAACAGTTAATATCTCAGAGTGTGATTTTCCATGATTTTGTCAAGTTTGATTTCCATGATTTTGTCGAGTTTGAAGAGAACTAGCAAAGCACTGAGTAATCGAGAATACTTTTGGTACATTCCCAAGGTGACTATGTTCATAATTATGATGAATGACAAAAAAGAGTCTCAATACAGAGTCTCAATGTATGATCCATGTAAATCCAAAAAATGTACTGGATAAAATTTAAAAAGTTAGCTAACCCTACGTTTTTATCCCGTATGTCTACATGTGAAAGGAAAGTTCTGAAGCTGGTGATCGTAGCTCTAGTAAAACTATTGTTGACAAAAAGGATAACAAAAATATAAACATGGTAATCTTTTGAGTGTTTTGTCTAACAGTTACCAGTGTTTATAAAATTTTCTGTTGAACCAAAACTTCCATAGGATTATCTACGTAGCTTTAGAAAGGAAGTATGGGTGAAAAGGTATATTGTTAGAAAATGGATTGATTTCAAAATGTTTGATGGCTAATCTGTGTGACCAAATTCATAACTGATTCCTTTGAGACCAGTGCCTTTTGTTTGTTTTACAAACGATTAAAATCTATCAATAAAATTTGAAATTGTCTAACAGAAACTTGAAAACCTGAGCTGGAGAGAAGCTTAGGTTTCTTACAGAAGCACATATGTTGAATATTTGGTTAGTTTCATTGTGATGTTTAGACTGAAAACTGGATGTTAAACTGTGAATCCAATAGGTGGGGGTGTGGGCCGAGCAAATTCCCATGGACGTATTCGGACAAAGAGACCTGCTATCTGCTAGAGGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCTGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGTTAG

mRNA sequence

ATGGCTACTGAGAGACTGGGGATCAAAGTTGAGAAGAATCCACCTGAATCCAAGCTTACCGAACTCGGCGTCCGTCAATGGCCCAAGTGGGGGTGTGGGCCGAGCAAATTCCCATGGACGTATTCGGACAAAGAGACCTGCTATCTGCTAGAGGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCTGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGTTAG

Coding sequence (CDS)

ATGGCTACTGAGAGACTGGGGATCAAAGTTGAGAAGAATCCACCTGAATCCAAGCTTACCGAACTCGGCGTCCGTCAATGGCCCAAGTGGGGGTGTGGGCCGAGCAAATTCCCATGGACGTATTCGGACAAAGAGACCTGCTATCTGCTAGAGGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCTGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGTTAG

Protein sequence

MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG

Homology

[Close]

BLAST of Lsi08G001900 vs. TrEMBL
Match: A0A0A0KVZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G646710 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.2e-49
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATERLGIKVEKNP ESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG
Sbjct: 43  MATERLGIKVEKNPSESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 102

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHY F
Sbjct: 103 SNESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYKF 137

[Close]

BLAST of Lsi08G001900 vs. TrEMBL
Match: W9RZP3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025166 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-44
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATE+LGIK+EKNPPESKL +LGVR WPKWGC PSKFPWTY  KETCYLLEGKVKVTPAG
Sbjct: 45  MATEKLGIKIEKNPPESKLAQLGVRNWPKWGCPPSKFPWTYDAKETCYLLEGKVKVTPAG 104

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLV FPKGM+CTWDVS AVDKHYNF
Sbjct: 105 STESVEIGAGDLVEFPKGMNCTWDVSAAVDKHYNF 139

[Close]

BLAST of Lsi08G001900 vs. TrEMBL
Match: M5VIJ4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025630mg PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-44
Identity = 81/95 (85.26%), Postives = 89/95 (93.68%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           M+T++LGIK++KNPPES+L++LGVR WPKW C PSKFPWTYSDKETCYLLEGKVKVTP G
Sbjct: 22  MSTDKLGIKIDKNPPESRLSQLGVRNWPKWSCPPSKFPWTYSDKETCYLLEGKVKVTPDG 81

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLV FPKGMSCTWDVSVAVDKHYNF
Sbjct: 82  SNESVEIGAGDLVEFPKGMSCTWDVSVAVDKHYNF 116

[Close]

BLAST of Lsi08G001900 vs. TrEMBL
Match: V7C668_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G128400g PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.0e-43
Identity = 80/93 (86.02%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3  TERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSE 62
          TE+LGIK+EKNPPE KLT+LGVRQWPKW C PSKFPWTY  KETCYLLEGKVKVTP G  
Sbjct: 5  TEKLGIKIEKNPPEDKLTQLGVRQWPKWSCPPSKFPWTYESKETCYLLEGKVKVTPTGEN 64

Query: 63 ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
          ESVEI AGD VVFPKGMSCTWDVSVAVDKHYNF
Sbjct: 65 ESVEIAAGDFVVFPKGMSCTWDVSVAVDKHYNF 97

[Close]

BLAST of Lsi08G001900 vs. TrEMBL
Match: R0GXZ3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002235mg PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.0e-43
Identity = 83/95 (87.37%), Postives = 85/95 (89.47%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATE+LGI VEKNPPESKLT+LGVR WPKWGC PSKFPWTYS KETCYLLEGKVKV P G
Sbjct: 41  MATEKLGITVEKNPPESKLTQLGVRNWPKWGCPPSKFPWTYSAKETCYLLEGKVKVYPEG 100

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           SEE VEI AGD VVFPKGMSCTWDVSVAVDKHY F
Sbjct: 101 SEEGVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQF 135

[Close]

BLAST of Lsi08G001900 vs. TAIR10
Match: AT4G10300.1 (AT4G10300.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-44
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 2   ATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGS 61
           +TE+LGI +EKNPPESKLT+LGVR WPKWGC PSKFPWTYS KETCYLL+GKVKV P GS
Sbjct: 40  STEKLGITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGS 99

Query: 62  EESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           +E VEI AGD VVFPKGMSCTWDVSVAVDKHY F
Sbjct: 100 DEGVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQF 133

[Close]

BLAST of Lsi08G001900 vs. TAIR10
Match: AT3G04300.1 (AT3G04300.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-30
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 1


Query: 6  LGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSEESV 65
          + I +E NP   +L++LGV  WPKW C P K+   + ++ETCYL++GKVKV P GS E V
Sbjct: 1  MNIVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFV 60

Query: 66 EIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
          E GAGDLV  PKG+SCTWDVS+ +DKHY F
Sbjct: 61 EFGAGDLVTIPKGLSCTWDVSLFIDKHYKF 90

[Close]

BLAST of Lsi08G001900 vs. TAIR10
Match: AT4G28703.1 (AT4G28703.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 116.7 bits (291), Expect = 7.9e-27
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTP-- 60
           MA +   I VE+NP +++L EL  + WPKWGC P K+   Y  +E CY+L GKVKV P  
Sbjct: 1   MADQNPRIIVEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKP 60

Query: 61  -------AGSEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
                  A  E  VE GAGD+V FPKG+SCTWDVS++VDKHY F
Sbjct: 61  PPSSSSDAEVEWCVEFGAGDIVTFPKGLSCTWDVSLSVDKHYIF 104

[Close]

BLAST of Lsi08G001900 vs. TAIR10
Match: AT4G10280.1 (AT4G10280.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-22
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 3   TERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG-- 62
           TE  G+K+ +   ++KL +LGV  WPKW   PSKFPW +   ET Y +EGKVKV   G  
Sbjct: 43  TEIHGVKILRQASDTKLAQLGVASWPKWEGAPSKFPWEFKKTETIYFMEGKVKVNVDGYD 102

Query: 63  -SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYN 95
             EE+ EIG GD+VVFPK M   W+++ AV K Y+
Sbjct: 103 EEEETFEIGKGDVVVFPKDMKVVWEITEAVKKQYS 137

[Close]

BLAST of Lsi08G001900 vs. TAIR10
Match: AT4G10290.1 (AT4G10290.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 3   TERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSE 62
           TE  G+KV +   ++KL ELGV  W  W   P KFPW +   ET Y +EGK+KV      
Sbjct: 15  TEIHGVKVMRQTSDAKLAELGVTSWQLWESMPRKFPWKFKKTETMYFVEGKLKVKVEDHH 74

Query: 63  ---ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHY 94
              E++E  AGDLVVFP+ M+   DV   V K Y
Sbjct: 75  KEGEALEFVAGDLVVFPQDMNVFVDVIEDVKKRY 108

[Close]

BLAST of Lsi08G001900 vs. NCBI nr
Match: gi|659119135|ref|XP_008459495.1| (PREDICTED: uncharacterized protein LOC103498612 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 8.2e-50
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATERLGIKVEKNP ESKL+ELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG
Sbjct: 43  MATERLGIKVEKNPSESKLSELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 102

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 97
           S+ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG
Sbjct: 103 SDESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 138

[Close]

BLAST of Lsi08G001900 vs. NCBI nr
Match: gi|449447523|ref|XP_004141517.1| (PREDICTED: uncharacterized protein LOC101218376 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATERLGIKVEKNP ESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG
Sbjct: 43  MATERLGIKVEKNPSESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 102

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLVVFPKGMSCTWDVSVAVDKHY F
Sbjct: 103 SNESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYKF 137

[Close]

BLAST of Lsi08G001900 vs. NCBI nr
Match: gi|470107904|ref|XP_004290278.1| (PREDICTED: uncharacterized protein LOC101291295 [Fragaria vesca subsp. vesca])

HSP 1 Score: 191.4 bits (485), Expect = 7.1e-46
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATE+LGIK+EKNPPES LT+LGVR WPKW C PSKFPWTYS+KETCYLLEGKVKVTPAG
Sbjct: 47  MATEKLGIKIEKNPPESTLTQLGVRNWPKWSCPPSKFPWTYSEKETCYLLEGKVKVTPAG 106

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 97
           S+ESVEIG GDLVVFPKGMSCTWDVSV VDKHYNFG
Sbjct: 107 SKESVEIGPGDLVVFPKGMSCTWDVSVGVDKHYNFG 142

[Close]

BLAST of Lsi08G001900 vs. NCBI nr
Match: gi|703110944|ref|XP_010099733.1| (hypothetical protein L484_025166 [Morus notabilis])

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 1


Query: 1   MATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAG 60
           MATE+LGIK+EKNPPESKL +LGVR WPKWGC PSKFPWTY  KETCYLLEGKVKVTPAG
Sbjct: 45  MATEKLGIKIEKNPPESKLAQLGVRNWPKWGCPPSKFPWTYDAKETCYLLEGKVKVTPAG 104

Query: 61  SEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNF 96
           S ESVEIGAGDLV FPKGM+CTWDVS AVDKHYNF
Sbjct: 105 STESVEIGAGDLVEFPKGMNCTWDVSAAVDKHYNF 139

[Close]

BLAST of Lsi08G001900 vs. NCBI nr
Match: gi|568849055|ref|XP_006478291.1| (PREDICTED: uncharacterized protein LOC102607448 [Citrus sinensis])

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 4   ERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSEE 63
           E+LG+K+E+NPPESKLTELGVRQWPKWGC PSKFPWTYSDKETCYLLEGKVKV P GS E
Sbjct: 47  EKLGVKIERNPPESKLTELGVRQWPKWGCPPSKFPWTYSDKETCYLLEGKVKVYPDGSNE 106

Query: 64  SVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 97
            VEIGAGDLVVFPKGMSCTWDVSV VDKHY FG
Sbjct: 107 GVEIGAGDLVVFPKGMSCTWDVSVGVDKHYKFG 139

The following BLAST results are available for this feature:

BLAST of Lsi08G001900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G001900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVZ0_CUCSA	8.2e-49	96.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G646710 PE=4 SV=1	[more]
W9RZP3_9ROSA	1.6e-44	87.37	Uncharacterized protein OS=Morus notabilis GN=L484_025166 PE=4 SV=1	[more]
M5VIJ4_PRUPE	3.6e-44	85.26	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025630mg PE=4 S...	[more]
V7C668_PHAVU	3.0e-43	86.02	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G128400g PE=4 SV=1	[more]
R0GXZ3_9BRAS	3.0e-43	87.37	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10002235mg PE=4 SV=1	[more]

BLAST of Lsi08G001900 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10300.1	1.1e-44	82.98	RmlC-like cupins superfamily protein	[more]
AT3G04300.1	4.5e-30	57.78	RmlC-like cupins superfamily protein	[more]
AT4G28703.1	7.9e-27	52.88	RmlC-like cupins superfamily protein	[more]
AT4G10280.1	1.2e-22	49.47	RmlC-like cupins superfamily protein	[more]
AT4G10290.1	1.1e-15	44.68	RmlC-like cupins superfamily protein	[more]

BLAST of Lsi08G001900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119135\|ref\|XP_008459495.1\|	8.2e-50	96.88	PREDICTED: uncharacterized protein LOC103498612 [Cucumis melo]	[more]
gi\|449447523\|ref\|XP_004141517.1\|	1.2e-48	96.84	PREDICTED: uncharacterized protein LOC101218376 [Cucumis sativus]	[more]
gi\|470107904\|ref\|XP_004290278.1\|	7.1e-46	88.54	PREDICTED: uncharacterized protein LOC101291295 [Fragaria vesca subsp. vesca]	[more]
gi\|703110944\|ref\|XP_010099733.1\|	2.3e-44	87.37	hypothetical protein L484_025166 [Morus notabilis]	[more]
gi\|568849055\|ref\|XP_006478291.1\|	2.3e-44	88.17	PREDICTED: uncharacterized protein LOC102607448 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014710	RmlC-like_jellyroll
IPR011051	RmlC_Cupin_sf
IPR008579	DUF861_Cupin_3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G001900.1	Lsi08G001900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008579	Domain of unknown function DUF861, cupin-3	PFAM	PF05899	Cupin_3	coord: 20..93 score: 1.9
IPR011051	RmlC-like cupin domain	unknown	SSF51182	RmlC-like cupins	coord: 18..93 score: 3.83
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 7..95 score: 1.6
None	No IPR available	PANTHER	PTHR33271	FAMILY NOT NAMED	coord: 1..95 score: 2.2
None	No IPR available	PANTHER	PTHR33271:SF6	SUBFAMILY NOT NAMED	coord: 1..95 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G001900	Csa5G646710	Cucumber (Chinese Long) v2	culsiB391
Lsi08G001900	CSPI05G30250	Wild cucumber (PI 183967)	cpilsiB395
Lsi08G001900	Cucsa.237860	Cucumber (Gy14) v1	cgylsiB389
Lsi08G001900	CmaCh09G012080	Cucurbita maxima (Rimu)	cmalsiB035
Lsi08G001900	CmoCh09G011990	Cucurbita moschata (Rifu)	cmolsiB026
Lsi08G001900	Cla012370	Watermelon (97103) v1	lsiwmB467
Lsi08G001900	MELO3C022114	Melon (DHL92) v3.5.1	lsimeB461
Lsi08G001900	ClCG08G001910	Watermelon (Charleston Gray)	lsiwcgB440
Lsi08G001900	MELO3C022114.2	Melon (DHL92) v3.6.1	lsimedB479
Lsi08G001900	Cla97C08G145990	Watermelon (97103) v2	lsiwmbB445
Lsi08G001900	Bhi06G000111	Wax gourd	lsiwgoB586
Lsi08G001900	Cp4.1LG06g09780	Cucurbita pepo (Zucchini)	cpelsiB650
Lsi08G001900	CsGy5G029640	Cucumber (Gy14) v2	cgyblsiB358
Lsi08G001900	CsaV3_5G039360	Cucumber (Chinese Long) v3	cuclsiB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G001900	Cucurbita maxima (Rimu)	cmalsiB453
Lsi08G001900	Cucurbita moschata (Rifu)	cmolsiB022
Lsi08G001900	Cucurbita moschata (Rifu)	cmolsiB440
Lsi08G001900	Cucurbita pepo (Zucchini)	cpelsiB479
Lsi08G001900	Silver-seed gourd	carlsiB555